Wall clock time and date at job start Tue Mar 31 2020 15:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35131 * 125.61852 * 2 1 4 4 C 1.40358 * 107.11624 * 180.02562 * 3 2 1 5 5 C 1.50709 * 126.64709 * 180.02562 * 4 3 2 6 6 C 1.36543 * 106.70811 * 359.97438 * 4 3 2 7 7 C 1.46659 * 125.98917 * 179.97438 * 6 4 3 8 8 O 1.21702 * 119.99682 * 359.97438 * 7 6 4 9 9 N 1.34776 * 120.00304 * 180.02562 * 7 6 4 10 10 C 1.46496 * 120.00006 * 179.97438 * 9 7 6 11 11 C 1.50706 * 109.47106 * 179.97438 * 10 9 7 12 12 C 1.38236 * 119.99994 * 269.73095 * 11 10 9 13 13 C 1.38240 * 119.99427 * 179.76551 * 12 11 10 14 14 C 1.38235 * 120.00231 * 0.48028 * 13 12 11 15 15 C 1.50696 * 119.99602 * 179.76924 * 14 13 12 16 16 N 1.46499 * 109.47149 * 270.02068 * 15 14 13 17 17 C 1.36937 * 120.00316 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99472 * 0.02562 * 17 16 15 19 19 C 1.38806 * 120.00367 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00123 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00152 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47156 * 59.99799 * 21 19 17 23 23 H 1.48496 * 109.47050 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46839 * 300.00130 * 21 19 17 25 25 C 1.38230 * 119.99928 * 359.79635 * 14 13 12 26 26 C 1.38235 * 120.00199 * 359.94838 * 25 14 13 27 27 O 1.33933 * 125.61390 * 180.28700 * 2 1 3 28 28 H 1.08998 * 109.46884 * 89.99866 * 1 2 3 29 29 H 1.08994 * 109.47339 * 210.00443 * 1 2 3 30 30 H 1.09005 * 109.47132 * 330.00135 * 1 2 3 31 31 H 1.08000 * 126.43790 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.46796 * 269.95846 * 5 4 3 33 33 H 1.09003 * 109.46628 * 29.95777 * 5 4 3 34 34 H 1.09000 * 109.46608 * 149.95616 * 5 4 3 35 35 H 0.96998 * 119.99803 * 359.97438 * 9 7 6 36 36 H 1.09001 * 109.47001 * 59.99676 * 10 9 7 37 37 H 1.09000 * 109.47574 * 299.99892 * 10 9 7 38 38 H 1.07997 * 120.00153 * 359.97438 * 12 11 10 39 39 H 1.08004 * 119.99453 * 180.24881 * 13 12 11 40 40 H 1.08992 * 109.47800 * 30.02452 * 15 14 13 41 41 H 1.09001 * 109.46952 * 150.02534 * 15 14 13 42 42 H 0.97002 * 120.00016 * 0.02562 * 16 15 14 43 43 H 0.97001 * 120.00527 * 180.02562 * 20 19 17 44 44 H 1.08001 * 120.00304 * 179.97438 * 25 14 13 45 45 H 1.07998 * 120.00589 * 180.02562 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6250 0.6531 -0.0006 5 6 4.8618 1.5143 -0.0003 6 6 3.5822 -0.7117 -0.0004 7 6 4.7413 -1.6102 -0.0013 8 8 5.8680 -1.1500 -0.0029 9 7 4.5589 -2.9456 -0.0015 10 6 5.7167 -3.8431 -0.0030 11 6 5.2433 -5.2738 -0.0022 12 6 5.0332 -5.9317 1.1953 13 6 4.5942 -7.2425 1.1959 14 6 4.3750 -7.8986 -0.0009 15 6 3.9015 -9.3293 -0.0001 16 7 5.0593 -10.2269 -0.0016 17 6 4.8739 -11.5836 -0.0017 18 1 3.8741 -11.9919 -0.0011 19 6 5.9709 -12.4341 -0.0026 20 7 7.1894 -11.9365 -0.0029 21 14 5.7180 -14.2849 -0.0035 22 1 4.9568 -14.6799 -1.2159 23 1 7.0381 -14.9649 -0.0038 24 1 4.9578 -14.6811 1.2092 25 6 4.5906 -7.2426 -1.1984 26 6 5.0245 -5.9301 -1.1991 27 8 2.2869 -1.0888 -0.0055 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.9612 2.1260 0.0004 32 1 5.1601 1.7220 -1.0279 33 1 4.6512 2.4522 0.5136 34 1 5.6683 0.9915 0.5137 35 1 3.6609 -3.3124 -0.0006 36 1 6.3197 -3.6597 0.8863 37 1 6.3177 -3.6594 -0.8936 38 1 5.2087 -5.4205 2.1303 39 1 4.4262 -7.7552 2.1315 40 1 3.3008 -9.5128 0.8906 41 1 3.2983 -9.5129 -0.8892 42 1 5.9573 -9.8601 -0.0026 43 1 7.9561 -12.5307 -0.0039 44 1 4.4197 -7.7553 -2.1334 45 1 5.1925 -5.4173 -2.1346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698713915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:19 Heat of formation + Delta-G solvation = 4.413383 kcal Electronic energy + Delta-G solvation = -25918.470772 eV Core-core repulsion = 22095.401857 eV Total energy + Delta-G solvation = -3823.068914 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.07516 -39.90486 -39.01743 -35.71149 -34.63937 -34.12792 -32.88583 -32.08302 -30.72973 -30.28112 -28.31582 -28.09782 -26.46371 -24.35832 -22.51271 -22.50287 -21.97404 -21.56914 -20.52285 -19.94149 -18.50026 -17.29677 -16.89937 -16.37142 -15.90284 -15.64658 -15.35310 -14.84714 -14.74487 -14.56604 -14.26435 -13.98016 -13.57849 -13.46849 -13.38334 -13.29199 -13.22785 -13.17520 -13.00318 -12.82966 -12.71697 -12.34103 -12.07317 -11.98065 -11.85733 -11.09274 -10.86248 -10.73910 -10.63067 -10.40549 -10.10446 -9.99810 -9.78600 -9.41759 -8.91435 -8.74448 -8.69607 -8.46202 -6.96121 -5.77781 -3.07965 0.72107 1.36977 1.63234 1.94748 2.29964 2.90694 3.03793 3.43145 3.47266 3.48709 3.98718 4.17666 4.43034 4.49669 4.60182 4.66646 4.85628 4.93704 4.94579 5.03394 5.16193 5.17878 5.26888 5.30916 5.36504 5.42683 5.45344 5.55240 5.56526 5.73099 5.74867 5.82489 5.83693 6.03721 6.13294 6.15748 6.15943 6.19569 6.47333 6.52998 6.56921 6.62407 6.67982 7.08801 7.19854 7.23587 7.66819 7.82887 8.39819 9.51270 10.07134 10.42910 11.44530 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026579 B = 0.001865 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.219807 B =15010.311031 C =15743.137616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.023 3.977 3 C -0.225 4.225 4 C -0.082 4.082 5 C -0.095 4.095 6 C -0.089 4.089 7 C 0.603 3.397 8 O -0.520 6.520 9 N -0.713 5.713 10 C 0.166 3.834 11 C -0.126 4.126 12 C -0.102 4.102 13 C -0.106 4.106 14 C -0.063 4.063 15 C 0.184 3.816 16 N -0.726 5.726 17 C -0.244 4.244 18 H 0.071 0.929 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.910 3.090 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.106 4.106 26 C -0.102 4.102 27 O -0.162 6.162 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.155 0.845 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.407 0.593 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.124 0.876 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.028 28.601 0.024 31.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.029 4.029 3 C -0.244 4.244 4 C -0.085 4.085 5 C -0.152 4.152 6 C -0.141 4.141 7 C 0.389 3.611 8 O -0.399 6.399 9 N -0.364 5.364 10 C 0.044 3.956 11 C -0.127 4.127 12 C -0.121 4.121 13 C -0.125 4.125 14 C -0.064 4.064 15 C 0.057 3.943 16 N -0.371 5.371 17 C -0.375 4.375 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.579 5.579 21 Si 0.740 3.260 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.125 4.125 26 C -0.121 4.121 27 O -0.058 6.058 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.173 0.827 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.242 0.758 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.142 0.858 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.347 28.414 0.024 30.596 hybrid contribution -0.213 -1.036 -0.022 1.057 sum -11.559 27.378 0.001 29.718 Atomic orbital electron populations 1.20433 0.84481 1.04605 1.04070 1.22793 0.94292 0.84067 1.01751 1.21475 0.91854 0.99813 1.11274 1.20625 0.96391 0.92182 0.99320 1.20438 0.93863 0.97920 1.02948 1.21803 0.81902 0.94112 1.16247 1.16525 0.86046 0.81461 0.77037 1.90857 1.22042 1.75947 1.51038 1.46056 1.11010 1.05097 1.74247 1.20236 0.87180 0.84926 1.03289 1.19646 1.04244 0.94906 0.93919 1.20996 0.99128 0.94902 0.97059 1.21125 0.99013 0.94098 0.98252 1.20398 0.96434 0.96723 0.92795 1.19706 0.91370 0.84455 0.98752 1.42329 1.03070 1.02142 1.89554 1.19193 0.92702 0.82292 1.43296 0.91110 1.24769 0.95201 0.98085 1.02812 1.69663 0.97011 1.33974 1.57286 0.86237 0.76599 0.85279 0.77857 1.21221 1.21649 1.21225 1.21121 0.99044 0.94075 0.98243 1.20996 0.99143 0.94887 0.97068 1.84008 1.15873 1.34770 1.71152 0.89480 0.89998 0.88908 0.82731 0.90749 0.91480 0.89410 0.75816 0.90320 0.90312 0.86278 0.85766 0.95384 0.95387 0.78038 0.93386 0.85768 0.86282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.41 36.00 0.37 0.06 16 2 C 0.02 0.19 7.31 -35.42 -0.26 -0.07 16 3 C -0.23 -1.82 10.73 -39.89 -0.43 -2.25 16 4 C -0.08 -0.84 6.20 -104.43 -0.65 -1.48 16 5 C -0.10 -0.84 9.81 36.01 0.35 -0.49 16 6 C -0.09 -1.00 7.13 -36.80 -0.26 -1.27 16 7 C 0.60 7.38 7.79 -12.86 -0.10 7.28 16 8 O -0.52 -7.53 14.74 5.19 0.08 -7.45 16 9 N -0.71 -7.69 5.54 -62.80 -0.35 -8.04 16 10 C 0.17 1.86 5.80 -5.19 -0.03 1.83 16 11 C -0.13 -1.58 5.25 -104.62 -0.55 -2.13 16 12 C -0.10 -1.35 9.70 -39.58 -0.38 -1.74 16 13 C -0.11 -1.64 9.70 -39.58 -0.38 -2.03 16 14 C -0.06 -1.08 5.25 -104.63 -0.55 -1.63 16 15 C 0.18 3.73 6.38 -5.20 -0.03 3.70 16 16 N -0.73 -18.60 5.59 -61.09 -0.34 -18.94 16 17 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -28.38 13.06 55.49 0.72 -27.65 16 21 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 C -0.11 -1.64 9.70 -39.59 -0.38 -2.03 16 26 C -0.10 -1.35 9.70 -39.58 -0.38 -1.74 16 27 O -0.16 -1.64 10.40 4.99 0.05 -1.59 16 28 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.92 6.45 -51.93 -0.33 0.58 16 35 H 0.41 3.95 8.22 -40.82 -0.34 3.62 16 36 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 37 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 38 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.12 1.87 8.06 -52.48 -0.42 1.45 16 40 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 41 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 42 H 0.39 10.55 7.66 -40.82 -0.31 10.23 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 45 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 388.37 15.07 5.85 5.85 Total: -1.00 -33.08 388.37 -9.36 -42.44 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -6.44 Total: 9.44 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -3.91 Total: -11.42 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.03 Total: -54.63 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.13 Total: -9.04 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.08 -9.36 -42.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698713915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.849 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds