Wall clock time and date at job start Tue Mar 31 2020 15:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35131 * 125.61852 * 2 1 4 4 C 1.40358 * 107.11624 * 180.02562 * 3 2 1 5 5 C 1.50709 * 126.64709 * 180.02562 * 4 3 2 6 6 C 1.36543 * 106.70811 * 359.97438 * 4 3 2 7 7 C 1.46659 * 125.98917 * 179.97438 * 6 4 3 8 8 O 1.21702 * 119.99682 * 359.97438 * 7 6 4 9 9 N 1.34776 * 120.00304 * 180.02562 * 7 6 4 10 10 C 1.46496 * 120.00006 * 179.97438 * 9 7 6 11 11 C 1.50706 * 109.47106 * 179.97438 * 10 9 7 12 12 C 1.38236 * 119.99994 * 269.73095 * 11 10 9 13 13 C 1.38240 * 119.99427 * 179.76551 * 12 11 10 14 14 C 1.38235 * 120.00231 * 0.48028 * 13 12 11 15 15 C 1.50696 * 119.99602 * 179.76924 * 14 13 12 16 16 N 1.46499 * 109.47149 * 270.02068 * 15 14 13 17 17 C 1.36937 * 120.00316 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99472 * 0.02562 * 17 16 15 19 19 C 1.38806 * 120.00367 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00123 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00152 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47156 * 59.99799 * 21 19 17 23 23 H 1.48496 * 109.47050 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.46839 * 300.00130 * 21 19 17 25 25 C 1.38230 * 119.99928 * 359.79635 * 14 13 12 26 26 C 1.38235 * 120.00199 * 359.94838 * 25 14 13 27 27 O 1.33933 * 125.61390 * 180.28700 * 2 1 3 28 28 H 1.08998 * 109.46884 * 89.99866 * 1 2 3 29 29 H 1.08994 * 109.47339 * 210.00443 * 1 2 3 30 30 H 1.09005 * 109.47132 * 330.00135 * 1 2 3 31 31 H 1.08000 * 126.43790 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.46796 * 269.95846 * 5 4 3 33 33 H 1.09003 * 109.46628 * 29.95777 * 5 4 3 34 34 H 1.09000 * 109.46608 * 149.95616 * 5 4 3 35 35 H 0.96998 * 119.99803 * 359.97438 * 9 7 6 36 36 H 1.09001 * 109.47001 * 59.99676 * 10 9 7 37 37 H 1.09000 * 109.47574 * 299.99892 * 10 9 7 38 38 H 1.07997 * 120.00153 * 359.97438 * 12 11 10 39 39 H 1.08004 * 119.99453 * 180.24881 * 13 12 11 40 40 H 1.08992 * 109.47800 * 30.02452 * 15 14 13 41 41 H 1.09001 * 109.46952 * 150.02534 * 15 14 13 42 42 H 0.97002 * 120.00016 * 0.02562 * 16 15 14 43 43 H 0.97001 * 120.00527 * 180.02562 * 20 19 17 44 44 H 1.08001 * 120.00304 * 179.97438 * 25 14 13 45 45 H 1.07998 * 120.00589 * 180.02562 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6250 0.6531 -0.0006 5 6 4.8618 1.5143 -0.0003 6 6 3.5822 -0.7117 -0.0004 7 6 4.7413 -1.6102 -0.0013 8 8 5.8680 -1.1500 -0.0029 9 7 4.5589 -2.9456 -0.0015 10 6 5.7167 -3.8431 -0.0030 11 6 5.2433 -5.2738 -0.0022 12 6 5.0332 -5.9317 1.1953 13 6 4.5942 -7.2425 1.1959 14 6 4.3750 -7.8986 -0.0009 15 6 3.9015 -9.3293 -0.0001 16 7 5.0593 -10.2269 -0.0016 17 6 4.8739 -11.5836 -0.0017 18 1 3.8741 -11.9919 -0.0011 19 6 5.9709 -12.4341 -0.0026 20 7 7.1894 -11.9365 -0.0029 21 14 5.7180 -14.2849 -0.0035 22 1 4.9568 -14.6799 -1.2159 23 1 7.0381 -14.9649 -0.0038 24 1 4.9578 -14.6811 1.2092 25 6 4.5906 -7.2426 -1.1984 26 6 5.0245 -5.9301 -1.1991 27 8 2.2869 -1.0888 -0.0055 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.9612 2.1260 0.0004 32 1 5.1601 1.7220 -1.0279 33 1 4.6512 2.4522 0.5136 34 1 5.6683 0.9915 0.5137 35 1 3.6609 -3.3124 -0.0006 36 1 6.3197 -3.6597 0.8863 37 1 6.3177 -3.6594 -0.8936 38 1 5.2087 -5.4205 2.1303 39 1 4.4262 -7.7552 2.1315 40 1 3.3008 -9.5128 0.8906 41 1 3.2983 -9.5129 -0.8892 42 1 5.9573 -9.8601 -0.0026 43 1 7.9561 -12.5307 -0.0039 44 1 4.4197 -7.7553 -2.1334 45 1 5.1925 -5.4173 -2.1346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698713915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:18 Heat of formation + Delta-G solvation = -15.709061 kcal Electronic energy + Delta-G solvation = -25919.343346 eV Core-core repulsion = 22095.401857 eV Total energy + Delta-G solvation = -3823.941489 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.75508 -40.90944 -40.11515 -37.02099 -35.98357 -35.02994 -33.81564 -33.33038 -31.87515 -31.86311 -29.16987 -28.88685 -27.63012 -25.87795 -24.16587 -23.65095 -22.75224 -22.32332 -21.72690 -20.72098 -19.33795 -19.30694 -17.62463 -17.39138 -16.96426 -16.71177 -16.61271 -16.25571 -15.83577 -15.75945 -15.26300 -15.20738 -14.86617 -14.56368 -14.36182 -14.22001 -14.03300 -14.00167 -13.72102 -13.70598 -13.59747 -13.41646 -13.25301 -13.12994 -12.99632 -12.73477 -12.58452 -12.25082 -11.97134 -11.93486 -11.75884 -11.34049 -10.98220 -10.66663 -10.32497 -9.84238 -9.68087 -9.42586 -9.04465 -7.96282 -5.26967 -0.03423 0.20769 0.48512 1.31098 1.46969 1.50466 1.56726 1.60619 2.04171 2.16887 2.54958 2.86579 3.36511 3.56090 3.62098 3.77464 3.85347 3.87088 4.02517 4.11241 4.23353 4.26006 4.44956 4.48954 4.53612 4.57188 4.61588 4.67104 4.71803 4.75066 4.76361 4.87699 4.88083 4.97842 5.04965 5.13302 5.17409 5.17754 5.27369 5.43088 5.46482 5.50422 5.56890 5.79107 5.85299 6.03883 6.24061 6.37641 6.94471 7.30715 8.03558 8.28808 9.26697 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026579 B = 0.001865 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.219807 B =15010.311031 C =15743.137616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.028 3.972 3 C -0.233 4.233 4 C -0.088 4.088 5 C -0.094 4.094 6 C -0.122 4.122 7 C 0.602 3.398 8 O -0.551 6.551 9 N -0.706 5.706 10 C 0.171 3.829 11 C -0.112 4.112 12 C -0.098 4.098 13 C -0.115 4.115 14 C -0.086 4.086 15 C 0.186 3.814 16 N -0.739 5.739 17 C -0.250 4.250 18 H 0.079 0.921 19 C -0.076 4.076 20 N -0.969 5.969 21 Si 0.978 3.022 22 H -0.276 1.276 23 H -0.295 1.295 24 H -0.276 1.276 25 C -0.115 4.115 26 C -0.098 4.098 27 O -0.173 6.173 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.182 0.818 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.413 0.587 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.142 0.858 39 H 0.123 0.877 40 H 0.031 0.969 41 H 0.031 0.969 42 H 0.373 0.627 43 H 0.252 0.748 44 H 0.123 0.877 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.818 30.262 0.010 33.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.025 4.025 3 C -0.251 4.251 4 C -0.091 4.091 5 C -0.150 4.150 6 C -0.173 4.173 7 C 0.390 3.610 8 O -0.431 6.431 9 N -0.356 5.356 10 C 0.049 3.951 11 C -0.113 4.113 12 C -0.116 4.116 13 C -0.134 4.134 14 C -0.086 4.086 15 C 0.060 3.940 16 N -0.382 5.382 17 C -0.382 4.382 18 H 0.097 0.903 19 C -0.268 4.268 20 N -0.619 5.619 21 Si 0.807 3.193 22 H -0.202 1.202 23 H -0.222 1.222 24 H -0.202 1.202 25 C -0.134 4.134 26 C -0.116 4.116 27 O -0.070 6.070 28 H 0.119 0.881 29 H 0.104 0.896 30 H 0.134 0.866 31 H 0.199 0.801 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.249 0.751 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.160 0.840 39 H 0.141 0.859 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.205 0.795 43 H 0.061 0.939 44 H 0.141 0.859 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.203 30.080 0.009 32.850 hybrid contribution 0.227 -1.386 -0.019 1.404 sum -12.976 28.694 -0.010 31.492 Atomic orbital electron populations 1.20667 0.81598 1.05946 1.05337 1.23647 0.95838 0.83488 0.99513 1.21812 0.90789 1.01250 1.11277 1.20999 0.97763 0.92093 0.98268 1.20441 0.92913 0.98473 1.03176 1.21655 0.82193 0.94397 1.19057 1.16671 0.86109 0.81745 0.76484 1.90833 1.23222 1.76466 1.52614 1.45937 1.11131 1.04719 1.73840 1.20167 0.87319 0.83975 1.03642 1.19773 1.02672 0.95367 0.93472 1.21209 0.98016 0.94011 0.98377 1.21178 0.99519 0.95084 0.97617 1.20181 0.98900 0.95318 0.94226 1.19762 0.89820 0.85798 0.98631 1.42533 1.03957 1.02199 1.89497 1.19638 0.93029 0.83713 1.41782 0.90349 1.25638 0.94983 1.02748 1.03430 1.69831 0.97701 1.35275 1.59138 0.85148 0.76257 0.79660 0.78282 1.20230 1.22151 1.20240 1.21175 0.99552 0.95065 0.97607 1.21207 0.98028 0.93993 0.98384 1.83995 1.15608 1.35830 1.71538 0.88069 0.89617 0.86595 0.80065 0.90400 0.89245 0.91392 0.75129 0.90043 0.90040 0.84036 0.85918 0.95132 0.95134 0.79498 0.93943 0.85918 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.41 71.23 0.74 0.35 16 2 C 0.03 0.38 7.31 24.97 0.18 0.56 16 3 C -0.23 -3.25 10.73 22.07 0.24 -3.01 16 4 C -0.09 -1.70 6.20 -19.74 -0.12 -1.83 16 5 C -0.09 -1.58 9.81 71.24 0.70 -0.89 16 6 C -0.12 -2.69 7.13 24.07 0.17 -2.51 16 7 C 0.60 14.60 7.79 86.44 0.67 15.27 16 8 O -0.55 -16.04 14.74 -4.36 -0.06 -16.11 16 9 N -0.71 -14.54 5.54 -470.83 -2.61 -17.15 16 10 C 0.17 3.61 5.80 85.64 0.50 4.10 16 11 C -0.11 -2.64 5.25 -19.86 -0.10 -2.74 16 12 C -0.10 -2.45 9.70 22.27 0.22 -2.24 16 13 C -0.12 -3.53 9.70 22.27 0.22 -3.32 16 14 C -0.09 -2.95 5.25 -19.87 -0.10 -3.05 16 15 C 0.19 7.63 6.38 85.63 0.55 8.18 16 16 N -0.74 -38.55 5.59 -347.20 -1.94 -40.49 16 17 C -0.25 -14.15 9.99 84.03 0.84 -13.31 16 18 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 19 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 20 N -0.97 -60.21 13.06 21.65 0.28 -59.93 16 21 Si 0.98 46.34 29.55 68.60 2.03 48.37 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 25 C -0.12 -3.53 9.70 22.27 0.22 -3.32 16 26 C -0.10 -2.45 9.70 22.27 0.22 -2.24 16 27 O -0.17 -3.32 10.40 -5.06 -0.05 -3.37 16 28 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.12 0.07 8.14 -2.38 -0.02 0.05 16 31 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.44 6.45 -2.39 -0.02 1.42 16 35 H 0.41 7.55 8.22 -92.71 -0.76 6.78 16 36 H 0.08 1.72 8.08 -2.39 -0.02 1.70 16 37 H 0.08 1.72 8.09 -2.39 -0.02 1.70 16 38 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 39 H 0.12 3.71 8.06 -2.91 -0.02 3.69 16 40 H 0.03 1.24 8.08 -2.39 -0.02 1.22 16 41 H 0.03 1.24 8.09 -2.39 -0.02 1.22 16 42 H 0.37 20.99 7.66 -92.71 -0.71 20.28 16 43 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 44 H 0.12 3.71 8.06 -2.91 -0.02 3.68 16 45 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -72.10 388.37 2.78 -69.33 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: -0.45 Total: 33.27 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 5.59 Total: -13.92 kcal Atomic # 7 Polarization: -113.30 SS G_CDS: -4.27 Total: -117.57 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.12 Total: -19.48 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -72.10 2.78 -69.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698713915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.617 kcal (2) G-P(sol) polarization free energy of solvation -72.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds