Wall clock time and date at job start Tue Mar 31 2020 15:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 110.64318 * 2 1 4 4 N 1.46509 * 109.46996 * 298.31044 * 3 2 1 5 5 C 1.36935 * 119.99727 * 179.97438 * 4 3 2 6 6 H 1.07998 * 120.00048 * 0.02562 * 5 4 3 7 7 C 1.38813 * 119.99600 * 179.97438 * 5 4 3 8 8 N 1.31620 * 120.00154 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99763 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47028 * 60.00452 * 9 7 5 11 11 H 1.48508 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47399 * 300.00300 * 9 7 5 13 13 C 1.55155 * 110.87271 * 123.24875 * 2 1 3 14 14 C 1.55126 * 101.48493 * 82.76596 * 13 2 1 15 15 N 1.47424 * 104.72648 * 37.29759 * 14 13 2 16 16 C 1.34770 * 125.65052 * 155.81404 * 15 14 13 17 17 O 1.21654 * 120.00180 * 4.38772 * 16 15 14 18 18 C 1.47084 * 120.00011 * 184.38253 * 16 15 14 19 19 C 1.36044 * 127.13956 * 354.30508 * 18 16 15 20 20 O 1.33811 * 109.85448 * 179.97438 * 19 18 16 21 21 C 1.34913 * 111.34399 * 359.97438 * 20 19 18 22 22 C 1.38968 * 133.11278 * 179.97438 * 21 20 19 23 23 C 1.37837 * 119.97409 * 180.02562 * 22 21 20 24 24 C 1.38688 * 120.65219 * 0.02562 * 23 22 21 25 25 C 1.37838 * 120.20444 * 0.26912 * 24 23 22 26 26 C 1.39118 * 119.62744 * 359.45564 * 25 24 23 27 27 C 1.47021 * 108.69677 * 335.55249 * 15 14 13 28 28 H 1.08993 * 109.47283 * 181.68413 * 1 2 3 29 29 H 1.08996 * 109.46765 * 301.69535 * 1 2 3 30 30 H 1.09002 * 109.46576 * 61.68870 * 1 2 3 31 31 H 1.08999 * 109.47153 * 58.31104 * 3 2 1 32 32 H 1.09004 * 109.47363 * 178.31574 * 3 2 1 33 33 H 0.96997 * 119.99967 * 359.97438 * 4 3 2 34 34 H 0.96999 * 119.99525 * 180.02562 * 8 7 5 35 35 H 1.09000 * 111.00696 * 201.00751 * 13 2 1 36 36 H 1.08997 * 111.00246 * 324.81902 * 13 2 1 37 37 H 1.09003 * 110.49742 * 278.44866 * 14 13 2 38 38 H 1.09001 * 110.33866 * 156.06400 * 14 13 2 39 39 H 1.07997 * 125.07766 * 0.02562 * 19 18 16 40 40 H 1.07999 * 120.01397 * 0.02562 * 22 21 20 41 41 H 1.08005 * 119.67450 * 180.02562 * 23 22 21 42 42 H 1.08004 * 119.89836 * 179.97438 * 24 23 22 43 43 H 1.07996 * 120.18624 * 179.72623 * 25 24 23 44 44 H 1.09005 * 109.87917 * 120.70612 * 27 15 14 45 45 H 1.08994 * 109.88095 * 241.71174 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0694 1.4318 0.0000 4 7 1.6285 2.1197 -1.2161 5 6 1.9917 3.4216 -1.4361 6 1 2.6034 3.9411 -0.7134 7 6 1.5744 4.0732 -2.5886 8 7 0.8293 3.4399 -3.4696 9 14 2.0692 5.8493 -2.8884 10 1 3.5501 5.9493 -2.9360 11 1 1.4997 6.3105 -4.1801 12 1 1.5507 6.7003 -1.7874 13 6 2.0828 -0.7949 1.2124 14 6 2.0140 -2.2517 0.6840 15 7 2.3756 -2.1507 -0.7417 16 6 2.8902 -3.1436 -1.4938 17 8 3.0186 -4.2585 -1.0241 18 6 3.2965 -2.8794 -2.8825 19 6 3.1208 -1.7275 -3.5846 20 8 3.6218 -1.8659 -4.8177 21 6 4.1486 -3.0947 -4.9985 22 6 4.7721 -3.7116 -6.0765 23 6 5.2177 -5.0110 -5.9629 24 6 5.0504 -5.7150 -4.7799 25 6 4.4289 -5.1220 -3.7019 26 6 3.9804 -3.8090 -3.8035 27 6 2.0760 -0.7892 -1.2086 28 1 -0.3633 -1.0271 0.0302 29 1 -0.3633 0.5399 0.8744 30 1 -0.3632 0.4874 -0.9048 31 1 1.6923 1.9621 0.8744 32 1 3.1588 1.4097 0.0302 33 1 1.0794 1.6530 -1.8653 34 1 0.5381 3.8952 -4.2750 35 1 3.1096 -0.5044 1.4347 36 1 1.4449 -0.6671 2.0869 37 1 1.0050 -2.6497 0.7922 38 1 2.7296 -2.8809 1.2132 39 1 2.6483 -0.8342 -3.2036 40 1 4.9074 -3.1730 -7.0028 41 1 5.7020 -5.4855 -6.8036 42 1 5.4038 -6.7328 -4.7045 43 1 4.2948 -5.6720 -2.7822 44 1 2.9851 -0.3162 -1.5801 45 1 1.3272 -0.8250 -1.9997 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699859042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:47 Heat of formation + Delta-G solvation = 15.445978 kcal Electronic energy + Delta-G solvation = -27999.918650 eV Core-core repulsion = 24177.328145 eV Total energy + Delta-G solvation = -3822.590505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.64002 -40.12733 -38.07828 -37.83976 -34.80987 -33.26235 -32.56317 -30.86887 -30.46459 -29.77450 -28.71066 -26.75888 -25.79977 -24.30362 -23.41443 -22.69685 -22.31261 -21.45597 -19.46811 -19.11870 -17.96587 -17.11562 -16.99271 -16.42455 -16.05278 -15.93209 -15.75946 -14.97966 -14.75356 -14.31554 -14.13148 -13.95267 -13.82489 -13.71134 -13.21410 -13.09187 -12.89994 -12.61423 -12.39566 -12.16649 -12.06125 -12.02461 -11.83917 -11.73347 -11.09939 -11.07632 -10.88215 -10.66534 -10.51330 -10.42842 -10.21213 -10.10328 -9.90925 -9.70564 -8.95578 -8.78359 -8.63267 -8.32618 -7.02232 -5.85060 -3.14047 0.70379 1.19687 1.70841 2.59511 2.96811 3.22749 3.39729 3.45007 3.45353 3.67243 4.32683 4.35573 4.45467 4.59206 4.69017 4.74097 4.85752 4.93759 5.03500 5.18211 5.24571 5.27565 5.32102 5.34685 5.47793 5.54326 5.65860 5.68265 5.74741 5.82195 5.86771 5.99306 6.03842 6.07641 6.09367 6.22953 6.24569 6.27537 6.31460 6.37174 6.49160 6.53204 6.63350 6.71442 6.99142 7.50186 7.63249 8.18498 8.33646 9.45569 9.99929 10.34841 11.37495 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011364 B = 0.003747 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.338554 B = 7471.317022 C = 9577.255001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.075 4.075 3 C 0.167 3.833 4 N -0.731 5.731 5 C -0.243 4.243 6 H 0.070 0.930 7 C -0.010 4.010 8 N -0.933 5.933 9 Si 0.906 3.094 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.123 4.123 14 C 0.112 3.888 15 N -0.612 5.612 16 C 0.606 3.394 17 O -0.544 6.544 18 C -0.238 4.238 19 C 0.074 3.926 20 O -0.178 6.178 21 C 0.043 3.957 22 C -0.104 4.104 23 C -0.098 4.098 24 C -0.136 4.136 25 C -0.063 4.063 26 C -0.089 4.089 27 C 0.097 3.903 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.027 0.973 32 H 0.023 0.977 33 H 0.383 0.617 34 H 0.256 0.744 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.231 0.769 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.130 0.870 43 H 0.136 0.864 44 H 0.082 0.918 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.902 -15.679 1.131 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.075 4.075 3 C 0.039 3.961 4 N -0.376 5.376 5 C -0.374 4.374 6 H 0.088 0.912 7 C -0.206 4.206 8 N -0.581 5.581 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.162 4.162 14 C -0.011 4.011 15 N -0.346 5.346 16 C 0.397 3.603 17 O -0.424 6.424 18 C -0.242 4.242 19 C 0.005 3.995 20 O -0.077 6.077 21 C -0.003 4.003 22 C -0.123 4.123 23 C -0.116 4.116 24 C -0.154 4.154 25 C -0.081 4.081 26 C -0.090 4.090 27 C -0.026 4.026 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.217 0.783 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.247 0.753 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.148 0.852 43 H 0.154 0.846 44 H 0.100 0.900 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.075 -15.974 1.122 16.799 hybrid contribution -0.039 1.036 -0.349 1.094 sum 5.037 -14.938 0.773 15.784 Atomic orbital electron populations 1.21773 0.93046 1.00858 1.03406 1.21807 0.96617 0.96096 0.93024 1.20684 0.96210 0.87943 0.91293 1.42353 1.62688 1.11873 1.20692 1.19154 1.26438 0.88499 1.03279 0.91220 1.24706 1.00384 0.98307 0.97209 1.69620 1.40316 1.36630 1.11548 0.86289 0.78007 0.84880 0.77114 1.21255 1.21678 1.21294 1.22928 1.02325 0.93155 0.97742 1.22264 1.00641 0.97708 0.80441 1.48338 1.62776 1.11830 1.11645 1.16648 0.76814 0.83340 0.83541 1.90750 1.56445 1.21801 1.73357 1.20842 1.11850 0.95388 0.96115 1.25685 0.93274 0.99477 0.81033 1.83961 1.61094 1.31038 1.31570 1.19680 1.00529 0.83659 0.96470 1.19956 1.00694 0.95049 0.96559 1.20915 0.99428 0.93049 0.98200 1.21082 1.00828 1.00429 0.93040 1.20676 0.95647 0.92424 0.99376 1.19409 1.01804 0.95390 0.92429 1.22563 1.00823 0.81125 0.98050 0.93310 0.92154 0.91102 0.95518 0.95950 0.78278 0.93373 0.90247 0.89539 0.91284 0.90502 0.75325 0.84830 0.84755 0.85234 0.84648 0.90018 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.26 37.16 0.31 -1.52 16 2 C -0.07 -1.04 0.61 -152.67 -0.09 -1.13 16 3 C 0.17 2.94 5.07 -4.03 -0.02 2.92 16 4 N -0.73 -16.44 5.15 -59.90 -0.31 -16.75 16 5 C -0.24 -6.31 9.99 -15.06 -0.15 -6.47 16 6 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 7 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 8 N -0.93 -26.44 13.06 55.49 0.72 -25.72 16 9 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 C -0.12 -1.40 6.04 -24.47 -0.15 -1.55 16 14 C 0.11 1.37 6.58 -2.41 -0.02 1.35 16 15 N -0.61 -8.77 3.32 -171.77 -0.57 -9.35 16 16 C 0.61 9.91 7.83 -12.68 -0.10 9.81 16 17 O -0.54 -10.09 16.60 5.23 0.09 -10.00 16 18 C -0.24 -3.72 6.27 -103.25 -0.65 -4.37 16 19 C 0.07 1.09 10.57 29.94 0.32 1.40 16 20 O -0.18 -2.73 10.53 5.31 0.06 -2.67 16 21 C 0.04 0.62 7.39 -38.56 -0.28 0.34 16 22 C -0.10 -1.19 10.06 -39.46 -0.40 -1.59 16 23 C -0.10 -0.94 10.01 -39.56 -0.40 -1.34 16 24 C -0.14 -1.41 10.04 -39.56 -0.40 -1.81 16 25 C -0.06 -0.84 9.89 -39.40 -0.39 -1.23 16 26 C -0.09 -1.35 6.29 -104.98 -0.66 -2.01 16 27 C 0.10 1.37 3.62 -3.07 -0.01 1.36 16 28 H 0.05 0.59 7.44 -51.93 -0.39 0.21 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.13 7.11 -51.93 -0.37 0.76 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.02 0.41 8.13 -51.93 -0.42 -0.01 16 33 H 0.38 8.90 6.37 -40.82 -0.26 8.64 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 36 H 0.09 0.84 8.04 -51.93 -0.42 0.42 16 37 H 0.07 0.80 7.71 -51.93 -0.40 0.40 16 38 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 39 H 0.23 3.17 4.39 -52.49 -0.23 2.94 16 40 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 42 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 43 H 0.14 1.83 7.56 -52.49 -0.40 1.43 16 44 H 0.08 1.23 6.47 -51.93 -0.34 0.89 16 45 H 0.08 1.07 6.83 -51.93 -0.35 0.72 16 LS Contribution 366.31 15.07 5.52 5.52 Total: -1.00 -31.35 366.31 -8.77 -40.12 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -6.07 Total: 8.54 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -3.18 Total: -6.19 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -0.15 Total: -51.81 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.14 Total: -12.67 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.35 -8.77 -40.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699859042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.566 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds