Wall clock time and date at job start Tue Mar 31 2020 15:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 110.64318 * 2 1 4 4 N 1.46509 * 109.46996 * 298.31044 * 3 2 1 5 5 C 1.36935 * 119.99727 * 179.97438 * 4 3 2 6 6 H 1.07998 * 120.00048 * 0.02562 * 5 4 3 7 7 C 1.38813 * 119.99600 * 179.97438 * 5 4 3 8 8 N 1.31620 * 120.00154 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99763 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47028 * 60.00452 * 9 7 5 11 11 H 1.48508 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47399 * 300.00300 * 9 7 5 13 13 C 1.55155 * 110.87271 * 123.24875 * 2 1 3 14 14 C 1.55126 * 101.48493 * 82.76596 * 13 2 1 15 15 N 1.47424 * 104.72648 * 37.29759 * 14 13 2 16 16 C 1.34770 * 125.65052 * 155.81404 * 15 14 13 17 17 O 1.21654 * 120.00180 * 4.38772 * 16 15 14 18 18 C 1.47084 * 120.00011 * 184.38253 * 16 15 14 19 19 C 1.36044 * 127.13956 * 354.30508 * 18 16 15 20 20 O 1.33811 * 109.85448 * 179.97438 * 19 18 16 21 21 C 1.34913 * 111.34399 * 359.97438 * 20 19 18 22 22 C 1.38968 * 133.11278 * 179.97438 * 21 20 19 23 23 C 1.37837 * 119.97409 * 180.02562 * 22 21 20 24 24 C 1.38688 * 120.65219 * 0.02562 * 23 22 21 25 25 C 1.37838 * 120.20444 * 0.26912 * 24 23 22 26 26 C 1.39118 * 119.62744 * 359.45564 * 25 24 23 27 27 C 1.47021 * 108.69677 * 335.55249 * 15 14 13 28 28 H 1.08993 * 109.47283 * 181.68413 * 1 2 3 29 29 H 1.08996 * 109.46765 * 301.69535 * 1 2 3 30 30 H 1.09002 * 109.46576 * 61.68870 * 1 2 3 31 31 H 1.08999 * 109.47153 * 58.31104 * 3 2 1 32 32 H 1.09004 * 109.47363 * 178.31574 * 3 2 1 33 33 H 0.96997 * 119.99967 * 359.97438 * 4 3 2 34 34 H 0.96999 * 119.99525 * 180.02562 * 8 7 5 35 35 H 1.09000 * 111.00696 * 201.00751 * 13 2 1 36 36 H 1.08997 * 111.00246 * 324.81902 * 13 2 1 37 37 H 1.09003 * 110.49742 * 278.44866 * 14 13 2 38 38 H 1.09001 * 110.33866 * 156.06400 * 14 13 2 39 39 H 1.07997 * 125.07766 * 0.02562 * 19 18 16 40 40 H 1.07999 * 120.01397 * 0.02562 * 22 21 20 41 41 H 1.08005 * 119.67450 * 180.02562 * 23 22 21 42 42 H 1.08004 * 119.89836 * 179.97438 * 24 23 22 43 43 H 1.07996 * 120.18624 * 179.72623 * 25 24 23 44 44 H 1.09005 * 109.87917 * 120.70612 * 27 15 14 45 45 H 1.08994 * 109.88095 * 241.71174 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0694 1.4318 0.0000 4 7 1.6285 2.1197 -1.2161 5 6 1.9917 3.4216 -1.4361 6 1 2.6034 3.9411 -0.7134 7 6 1.5744 4.0732 -2.5886 8 7 0.8293 3.4399 -3.4696 9 14 2.0692 5.8493 -2.8884 10 1 3.5501 5.9493 -2.9360 11 1 1.4997 6.3105 -4.1801 12 1 1.5507 6.7003 -1.7874 13 6 2.0828 -0.7949 1.2124 14 6 2.0140 -2.2517 0.6840 15 7 2.3756 -2.1507 -0.7417 16 6 2.8902 -3.1436 -1.4938 17 8 3.0186 -4.2585 -1.0241 18 6 3.2965 -2.8794 -2.8825 19 6 3.1208 -1.7275 -3.5846 20 8 3.6218 -1.8659 -4.8177 21 6 4.1486 -3.0947 -4.9985 22 6 4.7721 -3.7116 -6.0765 23 6 5.2177 -5.0110 -5.9629 24 6 5.0504 -5.7150 -4.7799 25 6 4.4289 -5.1220 -3.7019 26 6 3.9804 -3.8090 -3.8035 27 6 2.0760 -0.7892 -1.2086 28 1 -0.3633 -1.0271 0.0302 29 1 -0.3633 0.5399 0.8744 30 1 -0.3632 0.4874 -0.9048 31 1 1.6923 1.9621 0.8744 32 1 3.1588 1.4097 0.0302 33 1 1.0794 1.6530 -1.8653 34 1 0.5381 3.8952 -4.2750 35 1 3.1096 -0.5044 1.4347 36 1 1.4449 -0.6671 2.0869 37 1 1.0050 -2.6497 0.7922 38 1 2.7296 -2.8809 1.2132 39 1 2.6483 -0.8342 -3.2036 40 1 4.9074 -3.1730 -7.0028 41 1 5.7020 -5.4855 -6.8036 42 1 5.4038 -6.7328 -4.7045 43 1 4.2948 -5.6720 -2.7822 44 1 2.9851 -0.3162 -1.5801 45 1 1.3272 -0.8250 -1.9997 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699859042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:46 Heat of formation + Delta-G solvation = -2.701983 kcal Electronic energy + Delta-G solvation = -28000.705605 eV Core-core repulsion = 24177.328145 eV Total energy + Delta-G solvation = -3823.377460 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.72099 -41.31565 -39.28133 -38.85076 -36.42525 -34.56696 -33.93206 -32.32624 -31.43737 -31.04401 -29.78185 -27.94893 -27.34107 -25.69848 -24.48033 -24.14996 -23.30451 -22.60800 -20.62514 -20.35109 -19.25586 -18.76175 -18.06634 -17.57558 -17.14335 -17.04636 -16.84019 -16.59090 -16.04753 -15.58830 -15.44298 -15.26943 -14.95968 -14.85202 -14.74307 -14.43884 -14.10326 -13.65850 -13.51116 -13.34104 -13.30619 -13.09057 -12.90153 -12.86126 -12.81884 -12.67844 -12.18874 -12.02419 -11.98826 -11.80041 -11.53209 -11.40562 -11.28690 -11.19140 -10.88696 -9.84501 -9.71877 -9.34564 -8.93366 -7.90753 -5.17484 -0.33657 0.24111 0.62517 1.51223 1.51686 1.52234 1.57922 1.83842 2.04426 2.59299 2.70329 3.20773 3.30238 3.35967 3.45130 3.61492 3.74128 3.77504 3.92257 4.08614 4.12416 4.25022 4.28792 4.33137 4.34702 4.38770 4.48490 4.51843 4.68759 4.73853 4.75668 4.85486 4.97905 5.04751 5.08396 5.09799 5.18452 5.19685 5.24025 5.27889 5.35024 5.44673 5.49845 5.55535 5.56364 5.99684 6.27908 6.31639 6.94263 7.40098 8.14565 8.38628 9.31866 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011364 B = 0.003747 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.338554 B = 7471.317022 C = 9577.255001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.067 4.067 3 C 0.167 3.833 4 N -0.739 5.739 5 C -0.241 4.241 6 H 0.074 0.926 7 C -0.068 4.068 8 N -0.964 5.964 9 Si 0.963 3.037 10 H -0.281 1.281 11 H -0.298 1.298 12 H -0.281 1.281 13 C -0.109 4.109 14 C 0.108 3.892 15 N -0.608 5.608 16 C 0.602 3.398 17 O -0.572 6.572 18 C -0.254 4.254 19 C 0.072 3.928 20 O -0.191 6.191 21 C 0.018 3.982 22 C -0.108 4.108 23 C -0.084 4.084 24 C -0.122 4.122 25 C -0.087 4.087 26 C -0.118 4.118 27 C 0.101 3.899 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.032 0.968 32 H 0.022 0.978 33 H 0.377 0.623 34 H 0.250 0.750 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.233 0.767 40 H 0.156 0.844 41 H 0.179 0.821 42 H 0.164 0.836 43 H 0.125 0.875 44 H 0.071 0.929 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.875 -16.707 1.323 17.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.068 4.068 3 C 0.040 3.960 4 N -0.383 5.383 5 C -0.373 4.373 6 H 0.091 0.909 7 C -0.260 4.260 8 N -0.614 5.614 9 Si 0.793 3.207 10 H -0.208 1.208 11 H -0.225 1.225 12 H -0.207 1.207 13 C -0.147 4.147 14 C -0.014 4.014 15 N -0.340 5.340 16 C 0.393 3.607 17 O -0.454 6.454 18 C -0.259 4.259 19 C 0.004 3.996 20 O -0.090 6.090 21 C -0.027 4.027 22 C -0.127 4.127 23 C -0.101 4.101 24 C -0.140 4.140 25 C -0.105 4.105 26 C -0.119 4.119 27 C -0.021 4.021 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.040 0.960 33 H 0.210 0.790 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.132 0.868 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.248 0.752 40 H 0.174 0.826 41 H 0.196 0.804 42 H 0.181 0.819 43 H 0.143 0.857 44 H 0.089 0.911 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.060 -16.996 1.365 18.096 hybrid contribution -0.270 1.261 -0.405 1.351 sum 5.791 -15.735 0.960 16.794 Atomic orbital electron populations 1.21706 0.92552 1.01783 1.02424 1.21688 0.96842 0.94050 0.94263 1.20800 0.96124 0.89709 0.89330 1.42500 1.62481 1.11140 1.22138 1.19528 1.25128 0.89844 1.02834 0.90855 1.25386 1.01371 1.01716 0.97566 1.69760 1.42031 1.37764 1.11884 0.85368 0.77691 0.81091 0.76524 1.20757 1.22486 1.20698 1.22910 1.02996 0.91534 0.97268 1.22463 1.01375 0.98425 0.79106 1.48364 1.61890 1.11305 1.12464 1.16794 0.76723 0.83278 0.83879 1.90717 1.57915 1.22805 1.73977 1.20976 1.12569 0.96130 0.96184 1.25667 0.93427 0.99389 0.81116 1.83919 1.61494 1.31973 1.31627 1.20175 1.01808 0.83305 0.97461 1.20452 0.99794 0.95921 0.96487 1.21455 0.97664 0.92019 0.99000 1.21524 0.98632 1.01734 0.92102 1.20800 0.97291 0.92018 1.00368 1.19684 1.02998 0.96427 0.92803 1.22469 1.00239 0.81127 0.98265 0.91542 0.91248 0.93796 0.95024 0.95975 0.78976 0.94134 0.89888 0.86787 0.90069 0.90232 0.75179 0.82609 0.80399 0.81853 0.85686 0.91122 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 8.26 71.98 0.59 -2.75 16 2 C -0.07 -1.81 0.61 -50.99 -0.03 -1.84 16 3 C 0.17 5.76 5.07 86.38 0.44 6.20 16 4 N -0.74 -33.42 5.15 -343.42 -1.77 -35.19 16 5 C -0.24 -12.55 9.99 84.03 0.84 -11.71 16 6 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 7 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 8 N -0.96 -55.70 13.06 21.65 0.28 -55.42 16 9 Si 0.96 44.48 29.55 68.60 2.03 46.51 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 C -0.11 -2.24 6.04 32.06 0.19 -2.04 16 14 C 0.11 2.48 6.58 86.93 0.57 3.06 16 15 N -0.61 -17.46 3.32 -815.61 -2.71 -20.17 16 16 C 0.60 20.31 7.83 86.56 0.68 20.99 16 17 O -0.57 -21.82 16.60 -4.20 -0.07 -21.89 16 18 C -0.25 -8.38 6.27 -18.98 -0.12 -8.50 16 19 C 0.07 2.27 10.57 67.31 0.71 2.98 16 20 O -0.19 -6.12 10.53 -3.91 -0.04 -6.16 16 21 C 0.02 0.54 7.39 22.93 0.17 0.71 16 22 C -0.11 -2.28 10.06 22.35 0.22 -2.06 16 23 C -0.08 -1.33 10.01 22.28 0.22 -1.11 16 24 C -0.12 -2.24 10.04 22.28 0.22 -2.02 16 25 C -0.09 -2.31 9.89 22.39 0.22 -2.09 16 26 C -0.12 -3.69 6.29 -20.09 -0.13 -3.82 16 27 C 0.10 2.91 3.62 86.73 0.31 3.23 16 28 H 0.07 1.50 7.44 -2.39 -0.02 1.49 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.04 1.40 7.11 -2.39 -0.02 1.38 16 31 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.02 0.78 8.13 -2.38 -0.02 0.76 16 33 H 0.38 17.93 6.37 -92.71 -0.59 17.34 16 34 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 35 H 0.08 1.69 8.04 -2.39 -0.02 1.67 16 36 H 0.11 1.79 8.04 -2.39 -0.02 1.77 16 37 H 0.08 1.71 7.71 -2.39 -0.02 1.70 16 38 H 0.08 1.84 8.08 -2.39 -0.02 1.82 16 39 H 0.23 6.89 4.39 -2.91 -0.01 6.88 16 40 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 41 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 42 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 43 H 0.13 3.50 7.56 -2.91 -0.02 3.47 16 44 H 0.07 2.20 6.47 -2.38 -0.02 2.19 16 45 H 0.07 2.13 6.83 -2.39 -0.02 2.11 16 Total: -1.00 -69.12 366.31 3.74 -65.38 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: 0.43 Total: 30.92 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 5.59 Total: -3.98 kcal Atomic # 7 Polarization: -106.58 SS G_CDS: -4.20 Total: -110.78 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.11 Total: -28.05 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -69.12 3.74 -65.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699859042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.673 kcal (2) G-P(sol) polarization free energy of solvation -69.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds