Wall clock time and date at job start Tue Mar 31 2020 15:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34177 * 125.43556 * 2 1 4 4 C 1.47017 * 105.95640 * 179.97438 * 3 2 1 5 5 C 1.47375 * 127.19634 * 179.97438 * 4 3 2 6 6 O 1.21613 * 119.99975 * 20.82927 * 5 4 3 7 7 N 1.34773 * 120.00464 * 200.83631 * 5 4 3 8 8 C 1.46508 * 119.99754 * 355.84848 * 7 5 4 9 9 C 1.52997 * 109.47432 * 269.07566 * 8 7 5 10 10 N 1.46495 * 109.47259 * 180.02562 * 9 8 7 11 11 C 1.36941 * 119.99872 * 179.97438 * 10 9 8 12 12 H 1.07994 * 119.99945 * 359.97438 * 11 10 9 13 13 C 1.38811 * 119.99793 * 179.97438 * 11 10 9 14 14 N 1.31627 * 120.00195 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99874 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47117 * 90.00455 * 15 13 11 17 17 H 1.48503 * 109.47053 * 210.00080 * 15 13 11 18 18 H 1.48496 * 109.47392 * 330.00295 * 15 13 11 19 19 C 1.46493 * 120.00536 * 175.84919 * 7 5 4 20 20 C 1.50698 * 109.47521 * 273.17165 * 19 7 5 21 21 C 1.38235 * 120.00012 * 86.15552 * 20 19 7 22 22 C 1.38237 * 119.99640 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00399 * 0.07415 * 22 21 20 24 24 C 1.38235 * 119.99620 * 359.90592 * 23 22 21 25 25 C 1.38235 * 119.99644 * 266.13652 * 20 19 7 26 26 C 1.36418 * 105.61194 * 0.22598 * 4 3 2 27 27 O 1.33656 * 108.39985 * 359.62823 * 26 4 3 28 28 H 1.09007 * 109.47067 * 90.00657 * 1 2 3 29 29 H 1.09003 * 109.46910 * 210.00178 * 1 2 3 30 30 H 1.08990 * 109.47657 * 330.00637 * 1 2 3 31 31 H 1.08000 * 127.02102 * 0.02562 * 3 2 1 32 32 H 1.09008 * 109.46925 * 29.07845 * 8 7 5 33 33 H 1.09000 * 109.46975 * 149.06830 * 8 7 5 34 34 H 1.09003 * 109.46604 * 299.99927 * 9 8 7 35 35 H 1.09003 * 109.47141 * 59.99592 * 9 8 7 36 36 H 0.96998 * 120.00309 * 359.97438 * 10 9 8 37 37 H 0.96994 * 120.00274 * 179.97438 * 14 13 11 38 38 H 1.09007 * 109.47093 * 153.16882 * 19 7 5 39 39 H 1.09003 * 109.46856 * 33.17299 * 19 7 5 40 40 H 1.07996 * 119.99768 * 359.71056 * 21 20 19 41 41 H 1.08007 * 119.99472 * 179.97438 * 22 21 20 42 42 H 1.07997 * 119.99649 * 179.97438 * 23 22 21 43 43 H 1.08005 * 119.99545 * 180.02562 * 24 23 22 44 44 H 1.07997 * 120.00585 * 0.02562 * 25 20 19 45 45 H 1.08005 * 125.79862 * 179.75755 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6030 0.0006 5 6 4.9024 1.4126 0.0003 6 8 4.8696 2.5694 0.3741 7 7 6.0649 0.8712 -0.4142 8 6 6.1239 -0.5468 -0.7781 9 6 6.4966 -1.3744 0.4536 10 7 6.5562 -2.7921 0.0895 11 6 6.8740 -3.7293 1.0361 12 1 7.0810 -3.4232 2.0508 13 6 6.9299 -5.0727 0.6912 14 7 6.6780 -5.4458 -0.5457 15 14 7.3627 -6.3512 1.9826 16 1 6.1208 -6.8281 2.6426 17 1 8.0499 -7.4968 1.3341 18 1 8.2612 -5.7451 2.9976 19 6 7.2695 1.7003 -0.5009 20 6 7.3175 2.3775 -1.8463 21 6 6.6640 3.5803 -2.0384 22 6 6.7085 4.2017 -3.2724 23 6 7.4053 3.6196 -4.3148 24 6 8.0592 2.4169 -4.1225 25 6 8.0155 1.7960 -2.8882 26 6 3.5790 -0.7581 -0.0042 27 8 2.2852 -1.0935 0.0007 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5137 31 1 1.9594 2.1230 0.0004 32 1 5.1507 -0.8672 -1.1503 33 1 6.8753 -0.6917 -1.5543 34 1 7.4698 -1.0539 0.8256 35 1 5.7452 -1.2294 1.2297 36 1 6.3706 -3.0670 -0.8220 37 1 6.7175 -6.3844 -0.7867 38 1 8.1522 1.0726 -0.3783 39 1 7.2484 2.4551 0.2852 40 1 6.1150 4.0324 -1.2256 41 1 6.1975 5.1413 -3.4226 42 1 7.4397 4.1049 -5.2789 43 1 8.6039 1.9623 -4.9368 44 1 8.5260 0.8562 -2.7382 45 1 4.4104 -1.4475 -0.0089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699981776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:33 Heat of formation + Delta-G solvation = 36.668827 kcal Electronic energy + Delta-G solvation = -27721.743421 eV Core-core repulsion = 23900.073208 eV Total energy + Delta-G solvation = -3821.670213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.48854 -40.01508 -38.73907 -36.39141 -34.45052 -33.09470 -32.65582 -31.46840 -30.96271 -30.88702 -28.11339 -26.94695 -26.02877 -24.05239 -22.93059 -22.55425 -21.72533 -21.23730 -20.81628 -19.19812 -17.50084 -17.01174 -16.81652 -16.37172 -16.07632 -15.95276 -15.44995 -14.97748 -14.90684 -14.42355 -14.38138 -13.57169 -13.47392 -13.36188 -13.22621 -13.18592 -13.13519 -12.99602 -12.89384 -12.53032 -12.44239 -11.89546 -11.70404 -11.64268 -11.33649 -11.12291 -11.01134 -10.94106 -10.84641 -10.19400 -9.94621 -9.84953 -9.61254 -9.02407 -8.93037 -8.84018 -8.58945 -8.42384 -7.11259 -5.88476 -3.20251 1.24767 1.39632 1.54582 2.10890 2.92104 3.12107 3.38259 3.41299 3.44757 3.45523 3.84946 4.45728 4.57738 4.72925 4.78252 4.84687 4.97449 5.02133 5.09369 5.11861 5.17417 5.30261 5.35100 5.44186 5.46984 5.47916 5.49392 5.59861 5.65513 5.71309 5.73465 5.81238 5.94887 5.97111 6.05011 6.13947 6.30924 6.42502 6.43359 6.48391 6.54546 6.60697 6.67060 6.98074 7.15710 7.44848 7.61049 8.27761 8.29677 9.40691 9.90763 10.26132 11.33580 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008473 B = 0.004113 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3303.664650 B = 6806.434886 C = 9254.573896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.024 4.024 3 C -0.165 4.165 4 C -0.245 4.245 5 C 0.595 3.405 6 O -0.543 6.543 7 N -0.596 5.596 8 C 0.075 3.925 9 C 0.126 3.874 10 N -0.731 5.731 11 C -0.247 4.247 12 H 0.072 0.928 13 C -0.007 4.007 14 N -0.930 5.930 15 Si 0.908 3.092 16 H -0.288 1.288 17 H -0.290 1.290 18 H -0.281 1.281 19 C 0.156 3.844 20 C -0.104 4.104 21 C -0.096 4.096 22 C -0.127 4.127 23 C -0.120 4.120 24 C -0.125 4.125 25 C -0.104 4.104 26 C 0.020 3.980 27 O -0.169 6.169 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.154 0.846 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.033 0.967 35 H 0.027 0.973 36 H 0.385 0.615 37 H 0.257 0.743 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.129 0.871 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.137 16.302 -5.363 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.249 4.249 5 C 0.385 3.615 6 O -0.421 6.421 7 N -0.328 5.328 8 C -0.048 4.048 9 C -0.003 4.003 10 N -0.377 5.377 11 C -0.378 4.378 12 H 0.090 0.910 13 C -0.204 4.204 14 N -0.578 5.578 15 Si 0.739 3.261 16 H -0.215 1.215 17 H -0.217 1.217 18 H -0.207 1.207 19 C 0.034 3.966 20 C -0.105 4.105 21 C -0.115 4.115 22 C -0.145 4.145 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.123 4.123 26 C -0.050 4.050 27 O -0.064 6.064 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.172 0.828 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.050 0.950 35 H 0.044 0.956 36 H 0.219 0.781 37 H 0.067 0.933 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.147 0.853 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -5.223 16.544 -4.996 18.054 hybrid contribution 0.424 -0.796 0.255 0.937 sum -4.799 15.748 -4.741 17.132 Atomic orbital electron populations 1.20291 0.85001 1.04057 1.03477 1.22318 0.94217 0.84022 1.06707 1.22354 0.89926 0.99313 1.06890 1.21371 0.94457 0.93366 1.15752 1.17284 0.81991 0.85928 0.76273 1.90707 1.85767 1.17557 1.48108 1.47697 1.08873 1.10135 1.66090 1.22418 1.04050 0.79300 0.98984 1.21170 0.99103 0.85922 0.94090 1.42272 1.84822 0.99378 1.11221 1.19171 1.40200 0.87003 0.91394 0.90988 1.24747 1.02012 0.97100 0.96493 1.69647 1.55317 1.16060 1.16729 0.86178 0.78019 0.81363 0.80537 1.21544 1.21668 1.20667 1.20374 0.87382 0.94724 0.94161 1.20268 0.98458 0.95494 0.96315 1.21269 0.97710 0.94900 0.97609 1.21155 0.99838 1.00149 0.93364 1.21152 0.97877 0.96017 0.98784 1.21130 1.00112 0.95838 0.97253 1.21150 0.98805 0.99559 0.92738 1.26211 0.84262 0.96439 0.98062 1.83838 1.16806 1.35220 1.70580 0.90159 0.90374 0.89456 0.82783 0.89068 0.89434 0.94966 0.95586 0.78070 0.93301 0.89017 0.88916 0.85316 0.86318 0.86387 0.86117 0.85819 0.74409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.40 36.01 0.37 -0.26 16 2 C -0.02 -0.32 7.28 -35.74 -0.26 -0.58 16 3 C -0.17 -2.39 10.96 -37.46 -0.41 -2.80 16 4 C -0.25 -4.00 6.01 -103.28 -0.62 -4.62 16 5 C 0.59 9.97 7.64 -12.54 -0.10 9.88 16 6 O -0.54 -10.00 15.64 5.27 0.08 -9.92 16 7 N -0.60 -8.89 2.46 -176.34 -0.43 -9.32 16 8 C 0.08 1.15 4.99 -4.04 -0.02 1.13 16 9 C 0.13 2.31 5.44 -4.05 -0.02 2.29 16 10 N -0.73 -16.84 5.44 -59.91 -0.33 -17.17 16 11 C -0.25 -6.51 9.99 -15.06 -0.15 -6.66 16 12 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 13 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 14 N -0.93 -26.66 13.06 55.49 0.72 -25.94 16 15 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.16 2.05 5.54 -5.20 -0.03 2.02 16 20 C -0.10 -1.34 5.44 -104.63 -0.57 -1.91 16 21 C -0.10 -1.25 9.61 -39.58 -0.38 -1.63 16 22 C -0.13 -1.45 10.05 -39.58 -0.40 -1.84 16 23 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 24 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 25 C -0.10 -1.24 9.69 -39.58 -0.38 -1.62 16 26 C 0.02 0.32 9.30 30.08 0.28 0.60 16 27 O -0.17 -2.70 10.52 7.65 0.08 -2.62 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.15 1.98 8.06 -52.49 -0.42 1.55 16 32 H 0.09 1.40 4.44 -51.92 -0.23 1.17 16 33 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.03 0.50 6.88 -51.93 -0.36 0.15 16 36 H 0.39 9.21 7.67 -40.82 -0.31 8.90 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.09 1.08 7.97 -51.92 -0.41 0.67 16 39 H 0.09 1.25 7.43 -51.93 -0.39 0.86 16 40 H 0.13 1.77 7.15 -52.49 -0.38 1.40 16 41 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 42 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 44 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 45 H 0.24 4.07 3.45 -52.48 -0.18 3.89 16 LS Contribution 377.98 15.07 5.70 5.70 Total: -1.00 -31.50 377.98 -8.80 -40.30 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -6.03 Total: 12.11 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -3.58 Total: -9.74 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.04 Total: -52.43 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.16 Total: -12.54 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.50 -8.80 -40.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699981776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.968 kcal (2) G-P(sol) polarization free energy of solvation -31.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds