Wall clock time and date at job start Tue Mar 31 2020 15:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34177 * 125.43556 * 2 1 4 4 C 1.47017 * 105.95640 * 179.97438 * 3 2 1 5 5 C 1.47375 * 127.19634 * 179.97438 * 4 3 2 6 6 O 1.21613 * 119.99975 * 20.82927 * 5 4 3 7 7 N 1.34773 * 120.00464 * 200.83631 * 5 4 3 8 8 C 1.46508 * 119.99754 * 355.84848 * 7 5 4 9 9 C 1.52997 * 109.47432 * 269.07566 * 8 7 5 10 10 N 1.46495 * 109.47259 * 180.02562 * 9 8 7 11 11 C 1.36941 * 119.99872 * 179.97438 * 10 9 8 12 12 H 1.07994 * 119.99945 * 359.97438 * 11 10 9 13 13 C 1.38811 * 119.99793 * 179.97438 * 11 10 9 14 14 N 1.31627 * 120.00195 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99874 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47117 * 90.00455 * 15 13 11 17 17 H 1.48503 * 109.47053 * 210.00080 * 15 13 11 18 18 H 1.48496 * 109.47392 * 330.00295 * 15 13 11 19 19 C 1.46493 * 120.00536 * 175.84919 * 7 5 4 20 20 C 1.50698 * 109.47521 * 273.17165 * 19 7 5 21 21 C 1.38235 * 120.00012 * 86.15552 * 20 19 7 22 22 C 1.38237 * 119.99640 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00399 * 0.07415 * 22 21 20 24 24 C 1.38235 * 119.99620 * 359.90592 * 23 22 21 25 25 C 1.38235 * 119.99644 * 266.13652 * 20 19 7 26 26 C 1.36418 * 105.61194 * 0.22598 * 4 3 2 27 27 O 1.33656 * 108.39985 * 359.62823 * 26 4 3 28 28 H 1.09007 * 109.47067 * 90.00657 * 1 2 3 29 29 H 1.09003 * 109.46910 * 210.00178 * 1 2 3 30 30 H 1.08990 * 109.47657 * 330.00637 * 1 2 3 31 31 H 1.08000 * 127.02102 * 0.02562 * 3 2 1 32 32 H 1.09008 * 109.46925 * 29.07845 * 8 7 5 33 33 H 1.09000 * 109.46975 * 149.06830 * 8 7 5 34 34 H 1.09003 * 109.46604 * 299.99927 * 9 8 7 35 35 H 1.09003 * 109.47141 * 59.99592 * 9 8 7 36 36 H 0.96998 * 120.00309 * 359.97438 * 10 9 8 37 37 H 0.96994 * 120.00274 * 179.97438 * 14 13 11 38 38 H 1.09007 * 109.47093 * 153.16882 * 19 7 5 39 39 H 1.09003 * 109.46856 * 33.17299 * 19 7 5 40 40 H 1.07996 * 119.99768 * 359.71056 * 21 20 19 41 41 H 1.08007 * 119.99472 * 179.97438 * 22 21 20 42 42 H 1.07997 * 119.99649 * 179.97438 * 23 22 21 43 43 H 1.08005 * 119.99545 * 180.02562 * 24 23 22 44 44 H 1.07997 * 120.00585 * 0.02562 * 25 20 19 45 45 H 1.08005 * 125.79862 * 179.75755 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6030 0.0006 5 6 4.9024 1.4126 0.0003 6 8 4.8696 2.5694 0.3741 7 7 6.0649 0.8712 -0.4142 8 6 6.1239 -0.5468 -0.7781 9 6 6.4966 -1.3744 0.4536 10 7 6.5562 -2.7921 0.0895 11 6 6.8740 -3.7293 1.0361 12 1 7.0810 -3.4232 2.0508 13 6 6.9299 -5.0727 0.6912 14 7 6.6780 -5.4458 -0.5457 15 14 7.3627 -6.3512 1.9826 16 1 6.1208 -6.8281 2.6426 17 1 8.0499 -7.4968 1.3341 18 1 8.2612 -5.7451 2.9976 19 6 7.2695 1.7003 -0.5009 20 6 7.3175 2.3775 -1.8463 21 6 6.6640 3.5803 -2.0384 22 6 6.7085 4.2017 -3.2724 23 6 7.4053 3.6196 -4.3148 24 6 8.0592 2.4169 -4.1225 25 6 8.0155 1.7960 -2.8882 26 6 3.5790 -0.7581 -0.0042 27 8 2.2852 -1.0935 0.0007 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5137 31 1 1.9594 2.1230 0.0004 32 1 5.1507 -0.8672 -1.1503 33 1 6.8753 -0.6917 -1.5543 34 1 7.4698 -1.0539 0.8256 35 1 5.7452 -1.2294 1.2297 36 1 6.3706 -3.0670 -0.8220 37 1 6.7175 -6.3844 -0.7867 38 1 8.1522 1.0726 -0.3783 39 1 7.2484 2.4551 0.2852 40 1 6.1150 4.0324 -1.2256 41 1 6.1975 5.1413 -3.4226 42 1 7.4397 4.1049 -5.2789 43 1 8.6039 1.9623 -4.9368 44 1 8.5260 0.8562 -2.7382 45 1 4.4104 -1.4475 -0.0089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699981776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:32 Heat of formation + Delta-G solvation = 19.764668 kcal Electronic energy + Delta-G solvation = -27722.476440 eV Core-core repulsion = 23900.073208 eV Total energy + Delta-G solvation = -3822.403233 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.67717 -41.19037 -39.74920 -37.84577 -36.06643 -34.30184 -33.81180 -33.00084 -32.14059 -31.78412 -29.62758 -28.03341 -27.07129 -25.82955 -24.19918 -23.56657 -23.15664 -22.25648 -21.95277 -20.44327 -19.25323 -18.30880 -17.92101 -17.54210 -17.28266 -17.18271 -16.69686 -16.34269 -15.94490 -15.80849 -15.62227 -15.23937 -15.04669 -14.55435 -14.32007 -14.26167 -14.09502 -13.97871 -13.77313 -13.64984 -13.48373 -13.15296 -13.05685 -12.89035 -12.80765 -12.66762 -12.48077 -12.16593 -12.08003 -11.87829 -11.83956 -11.24676 -11.00180 -10.81180 -9.91438 -9.82649 -9.70582 -9.56348 -9.06074 -7.96194 -5.26768 0.27492 0.33323 0.49664 1.00078 1.50099 1.50631 1.58642 1.75265 1.99083 2.13064 2.56761 2.92819 3.32753 3.38207 3.63148 3.77530 3.81199 3.82474 3.95373 4.05649 4.14605 4.17014 4.24122 4.29451 4.38625 4.42489 4.49277 4.56672 4.69719 4.72449 4.74301 4.75670 4.81102 4.86858 5.04087 5.06537 5.08882 5.16038 5.36948 5.41958 5.51195 5.56150 5.60782 5.67857 6.00003 6.10527 6.17338 6.25367 6.99469 7.33372 7.99886 8.26563 9.26106 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008473 B = 0.004113 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3303.664650 B = 6806.434886 C = 9254.573896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.013 4.013 3 C -0.184 4.184 4 C -0.256 4.256 5 C 0.590 3.410 6 O -0.564 6.564 7 N -0.589 5.589 8 C 0.090 3.910 9 C 0.133 3.867 10 N -0.737 5.737 11 C -0.248 4.248 12 H 0.074 0.926 13 C -0.062 4.062 14 N -0.961 5.961 15 Si 0.967 3.033 16 H -0.288 1.288 17 H -0.294 1.294 18 H -0.272 1.272 19 C 0.154 3.846 20 C -0.116 4.116 21 C -0.114 4.114 22 C -0.132 4.132 23 C -0.119 4.119 24 C -0.128 4.128 25 C -0.113 4.113 26 C 0.006 3.994 27 O -0.184 6.184 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.168 0.832 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.034 0.966 35 H 0.021 0.979 36 H 0.380 0.620 37 H 0.253 0.747 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.113 0.887 41 H 0.136 0.864 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.132 0.868 45 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.530 16.992 -6.018 18.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.062 4.062 3 C -0.203 4.203 4 C -0.260 4.260 5 C 0.381 3.619 6 O -0.445 6.445 7 N -0.320 5.320 8 C -0.033 4.033 9 C 0.006 3.994 10 N -0.382 5.382 11 C -0.380 4.380 12 H 0.091 0.909 13 C -0.255 4.255 14 N -0.611 5.611 15 Si 0.797 3.203 16 H -0.215 1.215 17 H -0.221 1.221 18 H -0.197 1.197 19 C 0.033 3.967 20 C -0.117 4.117 21 C -0.133 4.133 22 C -0.150 4.150 23 C -0.137 4.137 24 C -0.146 4.146 25 C -0.132 4.132 26 C -0.063 4.063 27 O -0.079 6.079 28 H 0.117 0.883 29 H 0.104 0.896 30 H 0.129 0.871 31 H 0.186 0.814 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.052 0.948 35 H 0.039 0.961 36 H 0.213 0.787 37 H 0.062 0.938 38 H 0.124 0.876 39 H 0.104 0.896 40 H 0.131 0.869 41 H 0.154 0.846 42 H 0.164 0.836 43 H 0.161 0.839 44 H 0.150 0.850 45 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -5.601 17.266 -5.635 19.006 hybrid contribution 0.505 -0.907 0.448 1.131 sum -5.096 16.359 -5.187 17.902 Atomic orbital electron populations 1.20561 0.81486 1.05592 1.05154 1.23194 0.95966 0.82914 1.04118 1.22599 0.89187 1.00419 1.08124 1.21560 0.95266 0.93465 1.15702 1.17458 0.82574 0.85750 0.76124 1.90688 1.86157 1.18398 1.49232 1.47697 1.09043 1.09927 1.65311 1.22199 1.04470 0.78998 0.97655 1.21170 0.98831 0.84079 0.95344 1.42332 1.84545 1.00831 1.10461 1.19499 1.38715 0.87797 0.91990 0.90850 1.25449 1.02964 0.98918 0.98204 1.69776 1.57042 1.15968 1.18316 0.85241 0.77652 0.78931 0.78513 1.21538 1.22097 1.19684 1.20493 0.86997 0.94639 0.94613 1.20227 0.99431 0.95775 0.96294 1.21268 0.98445 0.95463 0.98119 1.21414 0.99896 1.00811 0.92906 1.21504 0.96768 0.95809 0.99635 1.21466 0.99849 0.95913 0.97397 1.21319 0.98839 1.00032 0.92993 1.25958 0.84557 0.96238 0.99553 1.83835 1.16813 1.36487 1.70808 0.88261 0.89588 0.87128 0.81407 0.88986 0.88143 0.94789 0.96132 0.78730 0.93814 0.87630 0.89622 0.86904 0.84567 0.83639 0.83892 0.85019 0.75459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 10.40 71.24 0.74 -0.34 16 2 C -0.01 -0.35 7.28 24.76 0.18 -0.16 16 3 C -0.18 -5.22 10.96 23.65 0.26 -4.96 16 4 C -0.26 -8.41 6.01 -18.99 -0.11 -8.52 16 5 C 0.59 20.06 7.64 86.65 0.66 20.73 16 6 O -0.56 -21.21 15.64 -4.07 -0.06 -21.27 16 7 N -0.59 -17.63 2.46 -830.08 -2.04 -19.68 16 8 C 0.09 2.73 4.99 86.38 0.43 3.16 16 9 C 0.13 4.91 5.44 86.38 0.47 5.38 16 10 N -0.74 -34.10 5.44 -343.46 -1.87 -35.97 16 11 C -0.25 -13.09 9.99 84.03 0.84 -12.25 16 12 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 13 C -0.06 -3.38 5.50 84.86 0.47 -2.92 16 14 N -0.96 -55.56 13.06 21.65 0.28 -55.28 16 15 Si 0.97 44.42 29.55 68.60 2.03 46.45 16 16 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 17 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 C 0.15 4.06 5.54 85.63 0.47 4.53 16 20 C -0.12 -2.96 5.44 -19.87 -0.11 -3.07 16 21 C -0.11 -2.97 9.61 22.27 0.21 -2.75 16 22 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 23 C -0.12 -2.24 10.05 22.27 0.22 -2.02 16 24 C -0.13 -2.53 10.05 22.27 0.22 -2.30 16 25 C -0.11 -2.56 9.69 22.27 0.22 -2.35 16 26 C 0.01 0.21 9.30 67.39 0.63 0.84 16 27 O -0.18 -5.84 10.52 4.46 0.05 -5.79 16 28 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.17 4.16 8.06 -2.91 -0.02 4.13 16 32 H 0.09 2.86 4.44 -2.38 -0.01 2.85 16 33 H 0.10 2.82 8.08 -2.39 -0.02 2.80 16 34 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.02 0.81 6.88 -2.39 -0.02 0.79 16 36 H 0.38 18.35 7.67 -92.71 -0.71 17.64 16 37 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 38 H 0.11 2.43 7.97 -2.38 -0.02 2.41 16 39 H 0.09 2.37 7.43 -2.39 -0.02 2.35 16 40 H 0.11 3.23 7.15 -2.91 -0.02 3.21 16 41 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 42 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 43 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 44 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 45 H 0.23 7.97 3.45 -2.91 -0.01 7.96 16 Total: -1.00 -67.33 377.98 4.72 -62.62 By element: Atomic # 1 Polarization: 38.23 SS G_CDS: 0.31 Total: 38.54 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 6.03 Total: -9.62 kcal Atomic # 7 Polarization: -107.29 SS G_CDS: -3.63 Total: -110.92 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.02 Total: -27.07 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -67.33 4.72 -62.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699981776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.383 kcal (2) G-P(sol) polarization free energy of solvation -67.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds