Wall clock time and date at job start Tue Mar 31 2020 15:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34177 * 125.43732 * 2 1 4 4 C 1.47029 * 105.95272 * 179.73580 * 3 2 1 5 5 C 1.47375 * 127.19001 * 180.25884 * 4 3 2 6 6 O 1.21616 * 119.99610 * 179.97438 * 5 4 3 7 7 N 1.34783 * 120.00408 * 359.97438 * 5 4 3 8 8 C 1.46491 * 119.99950 * 180.02562 * 7 5 4 9 9 C 1.53007 * 109.46968 * 179.97438 * 8 7 5 10 10 H 1.09000 * 109.46422 * 294.99579 * 9 8 7 11 11 N 1.46497 * 109.47261 * 54.99622 * 9 8 7 12 12 C 1.36937 * 120.00093 * 205.00657 * 11 9 8 13 13 H 1.08006 * 119.99522 * 359.97438 * 12 11 9 14 14 C 1.38816 * 120.00362 * 180.02562 * 12 11 9 15 15 N 1.31617 * 119.99961 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 119.99629 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47276 * 90.00188 * 16 14 12 18 18 H 1.48501 * 109.47110 * 210.00295 * 16 14 12 19 19 H 1.48502 * 109.47077 * 329.99862 * 16 14 12 20 20 C 1.50693 * 109.47060 * 175.00060 * 9 8 7 21 21 C 1.38238 * 119.99626 * 279.71895 * 20 9 8 22 22 C 1.38237 * 119.99892 * 179.79108 * 21 20 9 23 23 C 1.38241 * 119.99809 * 0.44221 * 22 21 20 24 24 C 1.38234 * 120.00309 * 359.81376 * 23 22 21 25 25 C 1.38235 * 119.99690 * 359.97438 * 24 23 22 26 26 C 1.36414 * 105.61401 * 0.26266 * 4 3 2 27 27 C 1.50699 * 125.79801 * 179.97438 * 26 4 3 28 28 O 1.33648 * 108.39651 * 0.02562 * 26 4 3 29 29 H 1.09000 * 109.47298 * 90.00004 * 1 2 3 30 30 H 1.09001 * 109.47171 * 209.99908 * 1 2 3 31 31 H 1.09004 * 109.47024 * 330.00056 * 1 2 3 32 32 H 1.08002 * 127.02647 * 0.02562 * 3 2 1 33 33 H 0.97001 * 119.99484 * 359.97438 * 7 5 4 34 34 H 1.08998 * 109.47320 * 299.99222 * 8 7 5 35 35 H 1.08997 * 109.47682 * 59.99515 * 8 7 5 36 36 H 0.97001 * 120.00385 * 24.99983 * 11 9 8 37 37 H 0.97002 * 119.99806 * 180.02562 * 15 14 12 38 38 H 1.07998 * 120.00183 * 0.02562 * 21 20 9 39 39 H 1.07998 * 120.00081 * 180.27889 * 22 21 20 40 40 H 1.08002 * 119.99786 * 179.83156 * 23 22 21 41 41 H 1.07990 * 120.00466 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.00397 * 179.97438 * 25 24 23 43 43 H 1.09001 * 109.46861 * 90.00212 * 27 26 4 44 44 H 1.08999 * 109.47154 * 209.99760 * 27 26 4 45 45 H 1.08995 * 109.47634 * 330.00541 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6710 0.6028 0.0065 5 6 4.9024 1.4125 0.0143 6 8 5.9891 0.8664 0.0196 7 7 4.8243 2.7580 0.0155 8 6 6.0484 3.5628 0.0226 9 6 5.6820 5.0483 0.0219 10 1 5.1784 5.2978 -0.9120 11 7 4.7899 5.3319 1.1487 12 6 3.9343 6.3996 1.0928 13 1 3.9175 7.0328 0.2180 14 6 3.0892 6.6686 2.1608 15 7 2.2673 7.6952 2.1071 16 14 3.1188 5.5737 3.6739 17 1 4.1094 6.1004 4.6468 18 1 1.7719 5.5567 4.2990 19 1 3.4986 4.1935 3.2788 20 6 6.9353 5.8748 0.1530 21 6 7.5147 6.0593 1.3945 22 6 8.6668 6.8138 1.5143 23 6 9.2343 7.3914 0.3938 24 6 8.6520 7.2113 -0.8468 25 6 7.5024 6.4531 -0.9672 26 6 3.5789 -0.7582 0.0038 27 6 4.7389 -1.7202 0.0078 28 8 2.2852 -1.0935 -0.0042 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.9595 2.1230 0.0004 33 1 3.9575 3.1935 0.0109 34 1 6.6297 3.3321 0.9153 35 1 6.6388 3.3341 -0.8645 36 1 4.8051 4.7633 1.9345 37 1 1.6770 7.8834 2.8536 38 1 7.0695 5.6108 2.2703 39 1 9.1221 6.9542 2.4835 40 1 10.1329 7.9831 0.4878 41 1 9.0950 7.6628 -1.7221 42 1 7.0470 6.3127 -1.9364 43 1 5.0136 -1.9539 1.0364 44 1 4.4530 -2.6364 -0.5089 45 1 5.5893 -1.2663 -0.5010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753296424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:25 Heat of formation + Delta-G solvation = 10.238210 kcal Electronic energy + Delta-G solvation = -27444.024144 eV Core-core repulsion = 23621.207813 eV Total energy + Delta-G solvation = -3822.816331 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.60852 -39.42925 -38.72921 -36.06408 -33.78754 -33.10242 -32.90385 -31.99711 -30.51411 -30.02832 -29.62785 -27.79831 -25.27624 -23.93994 -22.94007 -22.45082 -21.92967 -20.77619 -20.12445 -19.35785 -17.85970 -17.18886 -16.52721 -16.38658 -15.66162 -15.61502 -15.37706 -14.71026 -14.53122 -14.31485 -14.18129 -13.61592 -13.53997 -13.43135 -13.15555 -12.96087 -12.92830 -12.85076 -12.82219 -12.72025 -12.49644 -12.43137 -12.20253 -11.61359 -11.42081 -11.07118 -10.89773 -10.78348 -10.59606 -10.20152 -9.80200 -9.74812 -9.69168 -9.13248 -8.80371 -8.46899 -8.38154 -8.26357 -7.45400 -5.87589 -3.26084 1.38183 1.80139 1.86207 2.01770 2.66368 3.28676 3.32566 3.38269 3.48158 3.53377 4.23919 4.40640 4.48371 4.77283 4.90192 5.04571 5.10775 5.24031 5.28324 5.29704 5.33846 5.35862 5.40675 5.42399 5.42995 5.52203 5.59755 5.64681 5.70913 5.72164 5.89998 5.95988 6.00879 6.08048 6.12962 6.31652 6.34166 6.41528 6.53781 6.71040 6.88354 6.93459 7.03452 7.17779 7.45475 7.82454 7.85998 8.29930 8.45607 9.06196 9.78020 9.95682 11.30039 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010132 B = 0.004054 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.763046 B = 6905.138507 C = 8844.946105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.018 4.018 3 C -0.181 4.181 4 C -0.237 4.237 5 C 0.587 3.413 6 O -0.554 6.554 7 N -0.709 5.709 8 C 0.119 3.881 9 C 0.204 3.796 10 H 0.074 0.926 11 N -0.739 5.739 12 C -0.247 4.247 13 H 0.092 0.908 14 C 0.013 3.987 15 N -0.928 5.928 16 Si 0.876 3.124 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.275 1.275 20 C -0.080 4.080 21 C -0.088 4.088 22 C -0.127 4.127 23 C -0.132 4.132 24 C -0.127 4.127 25 C -0.116 4.116 26 C 0.069 3.931 27 C -0.079 4.079 28 O -0.177 6.177 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.160 0.840 33 H 0.411 0.589 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.364 0.636 37 H 0.260 0.740 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.966 -13.636 -5.701 15.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.066 4.066 3 C -0.200 4.200 4 C -0.242 4.242 5 C 0.375 3.625 6 O -0.434 6.434 7 N -0.360 5.360 8 C -0.005 4.005 9 C 0.094 3.906 10 H 0.092 0.908 11 N -0.381 5.381 12 C -0.376 4.376 13 H 0.110 0.890 14 C -0.183 4.183 15 N -0.575 5.575 16 Si 0.706 3.294 17 H -0.210 1.210 18 H -0.217 1.217 19 H -0.201 1.201 20 C -0.083 4.083 21 C -0.106 4.106 22 C -0.145 4.145 23 C -0.150 4.150 24 C -0.145 4.145 25 C -0.135 4.135 26 C 0.016 3.984 27 C -0.135 4.135 28 O -0.074 6.074 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.178 0.822 33 H 0.247 0.753 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.197 0.803 37 H 0.071 0.929 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.135 0.865 43 H 0.104 0.896 44 H 0.093 0.907 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.432 -14.066 -5.757 15.831 hybrid contribution -0.494 0.088 1.340 1.431 sum 3.939 -13.977 -4.417 15.178 Atomic orbital electron populations 1.20334 0.84687 1.04259 1.03621 1.22217 0.93961 0.83621 1.06811 1.22737 0.90769 0.99901 1.06580 1.21172 0.93988 0.93261 1.15760 1.17185 0.87231 0.81975 0.76094 1.90717 1.28761 1.72101 1.51865 1.45785 1.10961 1.05328 1.73929 1.21638 0.86359 0.90281 1.02245 1.19440 0.88166 0.89549 0.93489 0.90791 1.42821 1.44202 1.34193 1.16905 1.19014 1.11995 1.03455 1.03181 0.89014 1.24623 0.98457 0.97558 0.97670 1.69690 1.26423 1.29181 1.32158 0.86691 0.77259 0.80770 0.84651 1.21036 1.21660 1.20149 1.20823 0.96247 0.98179 0.93061 1.20916 0.94315 0.97881 0.97479 1.21086 0.96652 0.98571 0.98168 1.20993 1.00165 1.00803 0.93065 1.21003 0.96632 0.99715 0.97183 1.21006 0.96060 0.98210 0.98212 1.22717 0.82885 0.94018 0.98745 1.20572 0.92215 0.96457 1.04226 1.83668 1.16153 1.35707 1.71914 0.90027 0.90619 0.88947 0.82201 0.75279 0.91535 0.90984 0.80281 0.92942 0.86479 0.86821 0.86963 0.86820 0.86543 0.89559 0.90691 0.87280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.40 36.00 0.37 -0.24 16 2 C -0.02 -0.22 7.28 -35.74 -0.26 -0.48 16 3 C -0.18 -2.50 10.48 -37.45 -0.39 -2.89 16 4 C -0.24 -3.63 6.31 -103.27 -0.65 -4.28 16 5 C 0.59 9.88 7.81 -12.54 -0.10 9.78 16 6 O -0.55 -10.19 14.85 5.26 0.08 -10.12 16 7 N -0.71 -11.55 5.38 -61.40 -0.33 -11.88 16 8 C 0.12 1.93 5.21 -4.04 -0.02 1.91 16 9 C 0.20 3.62 2.65 -69.08 -0.18 3.43 16 10 H 0.07 1.32 7.94 -51.93 -0.41 0.91 16 11 N -0.74 -15.73 3.59 -54.55 -0.20 -15.93 16 12 C -0.25 -6.40 10.40 -15.06 -0.16 -6.56 16 13 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 14 C 0.01 0.37 5.50 -17.43 -0.10 0.27 16 15 N -0.93 -27.82 13.97 55.49 0.78 -27.05 16 16 Si 0.88 21.09 27.74 -169.99 -4.71 16.38 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 20 C -0.08 -1.39 4.92 -104.62 -0.52 -1.90 16 21 C -0.09 -1.54 9.33 -39.58 -0.37 -1.91 16 22 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 23 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 24 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 25 C -0.12 -1.82 9.67 -39.58 -0.38 -2.21 16 26 C 0.07 0.95 7.37 -34.97 -0.26 0.69 16 27 C -0.08 -0.85 9.89 36.01 0.36 -0.50 16 28 O -0.18 -2.34 10.52 7.67 0.08 -2.26 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.16 2.08 7.74 -52.49 -0.41 1.67 16 33 H 0.41 6.70 7.31 -40.82 -0.30 6.40 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.36 7.84 5.66 -40.82 -0.23 7.61 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.12 2.13 7.71 -52.49 -0.40 1.72 16 39 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 41 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 42 H 0.12 1.61 8.04 -52.49 -0.42 1.19 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.11 1.31 6.49 -51.93 -0.34 0.98 16 LS Contribution 382.57 15.07 5.77 5.77 Total: -1.00 -32.00 382.57 -8.72 -40.72 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -6.33 Total: 16.18 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -3.85 Total: -11.80 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.25 Total: -54.86 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.16 Total: -12.38 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.71 Total: 16.38 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.00 -8.72 -40.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753296424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.959 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds