Wall clock time and date at job start Tue Mar 31 2020 15:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34177 * 125.43732 * 2 1 4 4 C 1.47029 * 105.95272 * 179.73580 * 3 2 1 5 5 C 1.47375 * 127.19001 * 180.25884 * 4 3 2 6 6 O 1.21616 * 119.99610 * 179.97438 * 5 4 3 7 7 N 1.34783 * 120.00408 * 359.97438 * 5 4 3 8 8 C 1.46491 * 119.99950 * 180.02562 * 7 5 4 9 9 C 1.53007 * 109.46968 * 179.97438 * 8 7 5 10 10 H 1.09000 * 109.46422 * 294.99579 * 9 8 7 11 11 N 1.46497 * 109.47261 * 54.99622 * 9 8 7 12 12 C 1.36937 * 120.00093 * 205.00657 * 11 9 8 13 13 H 1.08006 * 119.99522 * 359.97438 * 12 11 9 14 14 C 1.38816 * 120.00362 * 180.02562 * 12 11 9 15 15 N 1.31617 * 119.99961 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 119.99629 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47276 * 90.00188 * 16 14 12 18 18 H 1.48501 * 109.47110 * 210.00295 * 16 14 12 19 19 H 1.48502 * 109.47077 * 329.99862 * 16 14 12 20 20 C 1.50693 * 109.47060 * 175.00060 * 9 8 7 21 21 C 1.38238 * 119.99626 * 279.71895 * 20 9 8 22 22 C 1.38237 * 119.99892 * 179.79108 * 21 20 9 23 23 C 1.38241 * 119.99809 * 0.44221 * 22 21 20 24 24 C 1.38234 * 120.00309 * 359.81376 * 23 22 21 25 25 C 1.38235 * 119.99690 * 359.97438 * 24 23 22 26 26 C 1.36414 * 105.61401 * 0.26266 * 4 3 2 27 27 C 1.50699 * 125.79801 * 179.97438 * 26 4 3 28 28 O 1.33648 * 108.39651 * 0.02562 * 26 4 3 29 29 H 1.09000 * 109.47298 * 90.00004 * 1 2 3 30 30 H 1.09001 * 109.47171 * 209.99908 * 1 2 3 31 31 H 1.09004 * 109.47024 * 330.00056 * 1 2 3 32 32 H 1.08002 * 127.02647 * 0.02562 * 3 2 1 33 33 H 0.97001 * 119.99484 * 359.97438 * 7 5 4 34 34 H 1.08998 * 109.47320 * 299.99222 * 8 7 5 35 35 H 1.08997 * 109.47682 * 59.99515 * 8 7 5 36 36 H 0.97001 * 120.00385 * 24.99983 * 11 9 8 37 37 H 0.97002 * 119.99806 * 180.02562 * 15 14 12 38 38 H 1.07998 * 120.00183 * 0.02562 * 21 20 9 39 39 H 1.07998 * 120.00081 * 180.27889 * 22 21 20 40 40 H 1.08002 * 119.99786 * 179.83156 * 23 22 21 41 41 H 1.07990 * 120.00466 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.00397 * 179.97438 * 25 24 23 43 43 H 1.09001 * 109.46861 * 90.00212 * 27 26 4 44 44 H 1.08999 * 109.47154 * 209.99760 * 27 26 4 45 45 H 1.08995 * 109.47634 * 330.00541 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6710 0.6028 0.0065 5 6 4.9024 1.4125 0.0143 6 8 5.9891 0.8664 0.0196 7 7 4.8243 2.7580 0.0155 8 6 6.0484 3.5628 0.0226 9 6 5.6820 5.0483 0.0219 10 1 5.1784 5.2978 -0.9120 11 7 4.7899 5.3319 1.1487 12 6 3.9343 6.3996 1.0928 13 1 3.9175 7.0328 0.2180 14 6 3.0892 6.6686 2.1608 15 7 2.2673 7.6952 2.1071 16 14 3.1188 5.5737 3.6739 17 1 4.1094 6.1004 4.6468 18 1 1.7719 5.5567 4.2990 19 1 3.4986 4.1935 3.2788 20 6 6.9353 5.8748 0.1530 21 6 7.5147 6.0593 1.3945 22 6 8.6668 6.8138 1.5143 23 6 9.2343 7.3914 0.3938 24 6 8.6520 7.2113 -0.8468 25 6 7.5024 6.4531 -0.9672 26 6 3.5789 -0.7582 0.0038 27 6 4.7389 -1.7202 0.0078 28 8 2.2852 -1.0935 -0.0042 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.9595 2.1230 0.0004 33 1 3.9575 3.1935 0.0109 34 1 6.6297 3.3321 0.9153 35 1 6.6388 3.3341 -0.8645 36 1 4.8051 4.7633 1.9345 37 1 1.6770 7.8834 2.8536 38 1 7.0695 5.6108 2.2703 39 1 9.1221 6.9542 2.4835 40 1 10.1329 7.9831 0.4878 41 1 9.0950 7.6628 -1.7221 42 1 7.0470 6.3127 -1.9364 43 1 5.0136 -1.9539 1.0364 44 1 4.4530 -2.6364 -0.5089 45 1 5.5893 -1.2663 -0.5010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753296424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:24 Heat of formation + Delta-G solvation = -8.528248 kcal Electronic energy + Delta-G solvation = -27444.837919 eV Core-core repulsion = 23621.207813 eV Total energy + Delta-G solvation = -3823.630106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.63545 -40.75817 -40.00039 -37.54371 -35.32914 -34.27363 -33.87030 -33.62882 -31.88662 -31.53671 -30.49727 -29.13920 -26.37172 -25.41629 -24.45715 -23.63607 -23.18745 -21.89251 -21.52873 -20.63291 -19.73555 -18.31749 -17.65914 -17.55174 -17.02894 -16.90053 -16.72321 -16.12573 -15.91314 -15.79927 -15.43766 -14.91631 -14.80010 -14.49951 -14.33400 -14.21750 -14.13567 -14.05948 -14.04827 -13.82923 -13.53450 -13.48187 -13.25176 -13.08969 -12.92801 -12.52438 -12.47352 -12.18703 -12.05269 -11.80272 -11.70875 -11.17903 -11.00792 -10.85885 -10.12411 -9.69549 -9.61132 -9.39195 -9.31890 -8.01612 -5.36224 0.27973 0.56513 0.63018 0.98247 1.35673 1.37508 1.43602 1.68788 2.21939 2.28236 2.45749 2.99141 3.30753 3.45765 3.48578 3.75487 3.80979 3.95247 4.10668 4.16722 4.25650 4.31158 4.31872 4.38414 4.42646 4.53751 4.60197 4.65296 4.68264 4.70768 4.75847 4.79649 4.91908 4.97641 5.01733 5.19177 5.22270 5.27916 5.35927 5.42291 5.68227 5.70918 5.75895 5.88139 6.01184 6.21477 6.24705 6.50787 7.04817 7.14353 7.77534 7.97249 9.19546 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010132 B = 0.004054 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.763046 B = 6905.138507 C = 8844.946105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.011 4.011 3 C -0.203 4.203 4 C -0.268 4.268 5 C 0.586 3.414 6 O -0.574 6.574 7 N -0.709 5.709 8 C 0.131 3.869 9 C 0.209 3.791 10 H 0.072 0.928 11 N -0.737 5.737 12 C -0.217 4.217 13 H 0.062 0.938 14 C -0.048 4.048 15 N -0.978 5.978 16 Si 0.939 3.061 17 H -0.287 1.287 18 H -0.297 1.297 19 H -0.255 1.255 20 C -0.100 4.100 21 C -0.113 4.113 22 C -0.135 4.135 23 C -0.130 4.130 24 C -0.126 4.126 25 C -0.127 4.127 26 C 0.071 3.929 27 C -0.077 4.077 28 O -0.177 6.177 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.161 0.839 33 H 0.410 0.590 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.364 0.636 37 H 0.256 0.744 38 H 0.103 0.897 39 H 0.132 0.868 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.132 0.868 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.898 -15.018 -6.108 16.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.059 4.059 3 C -0.222 4.222 4 C -0.272 4.272 5 C 0.375 3.625 6 O -0.457 6.457 7 N -0.360 5.360 8 C 0.006 3.994 9 C 0.100 3.900 10 H 0.090 0.910 11 N -0.379 5.379 12 C -0.348 4.348 13 H 0.080 0.920 14 C -0.240 4.240 15 N -0.628 5.628 16 Si 0.768 3.232 17 H -0.214 1.214 18 H -0.224 1.224 19 H -0.180 1.180 20 C -0.103 4.103 21 C -0.132 4.132 22 C -0.153 4.153 23 C -0.148 4.148 24 C -0.144 4.144 25 C -0.145 4.145 26 C 0.018 3.982 27 C -0.133 4.133 28 O -0.074 6.074 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.179 0.821 33 H 0.246 0.754 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.198 0.802 37 H 0.066 0.934 38 H 0.121 0.879 39 H 0.150 0.850 40 H 0.162 0.838 41 H 0.163 0.837 42 H 0.149 0.851 43 H 0.114 0.886 44 H 0.121 0.879 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.405 -15.484 -6.193 17.531 hybrid contribution -0.693 0.533 1.340 1.600 sum 4.711 -14.951 -4.853 16.410 Atomic orbital electron populations 1.20534 0.81827 1.05393 1.05104 1.22902 0.95454 0.82870 1.04710 1.22838 0.90527 1.00596 1.08279 1.21217 0.93968 0.94083 1.17935 1.17424 0.87595 0.81988 0.75503 1.90694 1.29624 1.72387 1.52980 1.45789 1.10849 1.05396 1.73929 1.21511 0.86379 0.89022 1.02447 1.19493 0.87915 0.90718 0.91848 0.91038 1.42707 1.44287 1.32930 1.18004 1.18891 1.11280 1.03158 1.01432 0.92046 1.25240 0.98909 0.99175 1.00709 1.69848 1.28193 1.31680 1.33123 0.85658 0.76532 0.80047 0.80961 1.21418 1.22371 1.18030 1.20723 0.96455 0.99225 0.93938 1.20977 0.95713 0.99382 0.97104 1.21369 0.96061 0.98112 0.99772 1.21411 1.00849 1.00067 0.92489 1.21411 0.95823 0.98679 0.98493 1.21270 0.96768 0.98171 0.98302 1.23183 0.83676 0.94033 0.97305 1.20647 0.90729 0.96846 1.05043 1.83703 1.16009 1.35993 1.71690 0.88261 0.89052 0.88207 0.82097 0.75360 0.92208 0.89790 0.80222 0.93443 0.87904 0.85039 0.83789 0.83688 0.85053 0.88554 0.87917 0.88603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.05 10.40 71.23 0.74 -0.31 16 2 C -0.01 -0.26 7.28 24.76 0.18 -0.08 16 3 C -0.20 -5.53 10.48 23.65 0.25 -5.29 16 4 C -0.27 -8.11 6.31 -18.99 -0.12 -8.23 16 5 C 0.59 19.72 7.81 86.65 0.68 20.40 16 6 O -0.57 -21.14 14.85 -4.08 -0.06 -21.21 16 7 N -0.71 -23.16 5.38 -466.42 -2.51 -25.67 16 8 C 0.13 4.22 5.21 86.38 0.45 4.67 16 9 C 0.21 7.44 2.65 44.25 0.12 7.56 16 10 H 0.07 2.57 7.94 -2.39 -0.02 2.56 16 11 N -0.74 -31.61 3.59 -326.50 -1.17 -32.78 16 12 C -0.22 -11.47 10.40 84.03 0.87 -10.59 16 13 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 14 C -0.05 -2.71 5.50 84.86 0.47 -2.24 16 15 N -0.98 -60.35 13.97 21.65 0.30 -60.04 16 16 Si 0.94 44.31 27.74 68.60 1.90 46.21 16 17 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 18 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 19 H -0.26 -11.03 6.52 99.48 0.65 -10.38 16 20 C -0.10 -3.46 4.92 -19.87 -0.10 -3.56 16 21 C -0.11 -3.97 9.33 22.27 0.21 -3.76 16 22 C -0.14 -4.03 10.05 22.27 0.22 -3.81 16 23 C -0.13 -3.38 10.05 22.27 0.22 -3.16 16 24 C -0.13 -3.29 10.05 22.27 0.22 -3.06 16 25 C -0.13 -3.79 9.67 22.27 0.22 -3.58 16 26 C 0.07 1.88 7.37 25.26 0.19 2.07 16 27 C -0.08 -1.56 9.89 71.24 0.70 -0.85 16 28 O -0.18 -4.39 10.52 4.52 0.05 -4.34 16 29 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.16 4.20 7.74 -2.91 -0.02 4.17 16 33 H 0.41 13.50 7.31 -92.71 -0.68 12.82 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.36 15.64 5.66 -92.71 -0.52 15.12 16 37 H 0.26 15.24 8.31 -92.71 -0.77 14.46 16 38 H 0.10 3.80 7.71 -2.91 -0.02 3.77 16 39 H 0.13 3.33 8.06 -2.91 -0.02 3.31 16 40 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 41 H 0.15 2.84 8.06 -2.92 -0.02 2.82 16 42 H 0.13 3.43 8.04 -2.91 -0.02 3.41 16 43 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.10 2.25 6.49 -2.39 -0.02 2.23 16 Total: -1.00 -70.13 382.57 3.79 -66.34 By element: Atomic # 1 Polarization: 45.58 SS G_CDS: -0.24 Total: 45.33 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: 5.52 Total: -13.84 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -3.38 Total: -118.50 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.01 Total: -25.55 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.90 Total: 46.21 kcal Total: -70.13 3.79 -66.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753296424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.813 kcal (2) G-P(sol) polarization free energy of solvation -70.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds