Wall clock time and date at job start Tue Mar 31 2020 15:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.40364 * 126.44501 * 2 1 4 4 C 1.36544 * 106.71084 * 180.02562 * 3 2 1 5 5 C 1.46656 * 125.98722 * 179.97438 * 4 3 2 6 6 O 1.21695 * 120.00236 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99952 * 180.02562 * 5 4 3 8 8 C 1.46506 * 119.99873 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46684 * 180.02562 * 8 7 5 10 10 H 1.08998 * 109.47565 * 65.00686 * 9 8 7 11 11 N 1.46496 * 109.47535 * 305.00097 * 9 8 7 12 12 C 1.36939 * 120.00273 * 155.00146 * 11 9 8 13 13 H 1.08006 * 119.99802 * 0.02562 * 12 11 9 14 14 C 1.38806 * 120.00137 * 180.02562 * 12 11 9 15 15 N 1.31611 * 120.00236 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99831 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47293 * 90.00419 * 16 14 12 18 18 H 1.48507 * 109.46928 * 209.99899 * 16 14 12 19 19 H 1.48494 * 109.47213 * 329.99869 * 16 14 12 20 20 C 1.50707 * 109.47009 * 185.00223 * 9 8 7 21 21 C 1.38229 * 119.99970 * 79.72546 * 20 9 8 22 22 C 1.38239 * 119.99864 * 179.79318 * 21 20 9 23 23 C 1.38236 * 119.99852 * 0.43666 * 22 21 20 24 24 C 1.38225 * 120.00129 * 359.81987 * 23 22 21 25 25 C 1.38240 * 120.00299 * 359.97237 * 24 23 22 26 26 O 1.34912 * 108.02627 * 0.23168 * 4 3 2 27 27 C 1.33940 * 109.38168 * 359.62113 * 26 4 3 28 28 C 1.50694 * 125.61348 * 180.12917 * 27 26 4 29 29 H 1.08995 * 109.47906 * 89.97026 * 1 2 3 30 30 H 1.09005 * 109.46739 * 209.97117 * 1 2 3 31 31 H 1.09005 * 109.47357 * 329.96425 * 1 2 3 32 32 H 1.07999 * 126.64343 * 0.04751 * 3 2 1 33 33 H 0.96995 * 120.00018 * 0.27849 * 7 5 4 34 34 H 1.09000 * 109.47212 * 300.00355 * 8 7 5 35 35 H 1.09001 * 109.46577 * 60.00430 * 8 7 5 36 36 H 0.97002 * 120.00310 * 335.00385 * 11 9 8 37 37 H 0.97003 * 120.00398 * 179.97438 * 15 14 12 38 38 H 1.08000 * 120.00279 * 0.02562 * 21 20 9 39 39 H 1.07999 * 120.00035 * 180.27624 * 22 21 20 40 40 H 1.07998 * 119.99597 * 179.83810 * 23 22 21 41 41 H 1.08002 * 120.00254 * 179.97438 * 24 23 22 42 42 H 1.07995 * 120.00455 * 179.97438 * 25 24 23 43 43 H 1.09004 * 109.47036 * 270.29343 * 28 27 26 44 44 H 1.09000 * 109.47716 * 30.29122 * 28 27 26 45 45 H 1.09002 * 109.46946 * 150.29793 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3407 1.1291 0.0000 4 6 3.6260 0.6681 -0.0006 5 6 4.8378 1.4941 -0.0013 6 8 4.7471 2.7076 -0.0010 7 7 6.0520 0.9091 -0.0024 8 6 7.2626 1.7343 -0.0037 9 6 8.4964 0.8295 -0.0054 10 1 8.5316 0.2647 -0.9369 11 7 8.4231 -0.0984 1.1259 12 6 9.0841 -1.2965 1.0727 13 1 9.6598 -1.5572 0.1969 14 6 9.0143 -2.1759 2.1444 15 7 8.3132 -1.8580 3.2119 16 14 9.9165 -3.8099 2.0721 17 1 11.2871 -3.6433 2.6189 18 1 9.1812 -4.8175 2.8781 19 1 9.9984 -4.2682 0.6620 20 6 9.7387 1.6739 0.1172 21 6 10.1287 2.1543 1.3533 22 6 11.2706 2.9252 1.4663 23 6 12.0174 3.2232 0.3418 24 6 11.6245 2.7473 -0.8950 25 6 10.4850 1.9727 -1.0074 26 8 3.5858 -0.6804 -0.0061 27 6 2.3096 -1.0871 -0.0007 28 6 1.8455 -2.5208 -0.0015 29 1 -0.3635 0.0005 -1.0276 30 1 -0.3633 -0.8903 0.5134 31 1 -0.3634 0.8897 0.5144 32 1 2.0266 2.1624 0.0007 33 1 6.1244 -0.0581 -0.0067 34 1 7.2726 2.3634 -0.8938 35 1 7.2742 2.3636 0.8862 36 1 7.9064 0.1359 1.9127 37 1 8.2640 -2.4727 3.9607 38 1 9.5434 1.9242 2.2313 39 1 11.5777 3.2969 2.4327 40 1 12.9080 3.8277 0.4298 41 1 12.2077 2.9804 -1.7735 42 1 10.1777 1.6012 -1.9738 43 1 1.7335 -2.8659 -1.0293 44 1 2.5803 -3.1409 0.5119 45 1 0.8868 -2.5926 0.5123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753297947.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:30 Heat of formation + Delta-G solvation = -10.933426 kcal Electronic energy + Delta-G solvation = -27202.695339 eV Core-core repulsion = 23378.960937 eV Total energy + Delta-G solvation = -3823.734402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.76351 -40.79136 -40.02052 -37.47320 -35.62359 -35.14514 -33.72410 -32.96056 -31.70935 -31.20541 -29.80269 -29.18925 -27.18033 -25.61571 -24.35235 -23.30568 -22.94371 -22.19736 -21.45360 -20.58690 -19.40239 -18.83486 -17.75747 -17.62085 -17.09440 -16.88002 -16.54677 -16.17837 -15.84175 -15.69852 -15.47741 -15.03170 -14.64739 -14.56944 -14.24110 -14.10712 -14.08014 -14.00889 -13.84373 -13.65055 -13.60835 -13.42603 -12.96621 -12.94471 -12.80907 -12.49113 -12.43880 -12.18060 -12.04257 -11.85099 -11.66160 -11.50166 -11.00892 -10.74759 -10.26310 -9.68401 -9.54370 -9.36688 -9.05971 -7.93773 -5.23918 -0.02730 0.57614 0.64288 1.27010 1.46937 1.48306 1.55763 1.61529 2.05177 2.18336 2.54878 3.01025 3.40146 3.57472 3.75025 3.79783 3.87684 3.99268 4.14825 4.19962 4.29359 4.32750 4.33638 4.40627 4.45969 4.63954 4.65897 4.69999 4.74630 4.78078 4.81765 4.90497 4.99568 5.06643 5.08486 5.10400 5.17814 5.29693 5.30065 5.52525 5.58269 5.68700 5.72836 5.87721 5.93086 6.23875 6.27265 6.39694 6.93295 7.33617 8.00614 8.27286 9.28499 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009769 B = 0.003753 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.562145 B = 7459.035238 C = 9754.835002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.201 4.201 3 C -0.116 4.116 4 C -0.108 4.108 5 C 0.598 3.402 6 O -0.562 6.562 7 N -0.699 5.699 8 C 0.130 3.870 9 C 0.204 3.796 10 H 0.071 0.929 11 N -0.719 5.719 12 C -0.232 4.232 13 H 0.075 0.925 14 C -0.063 4.063 15 N -0.964 5.964 16 Si 0.964 3.036 17 H -0.294 1.294 18 H -0.297 1.297 19 H -0.268 1.268 20 C -0.101 4.101 21 C -0.110 4.110 22 C -0.136 4.136 23 C -0.130 4.130 24 C -0.125 4.125 25 C -0.126 4.126 26 O -0.175 6.175 27 C 0.013 3.987 28 C -0.078 4.078 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.165 0.835 33 H 0.413 0.587 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.374 0.626 37 H 0.249 0.751 38 H 0.095 0.905 39 H 0.128 0.872 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.134 0.866 43 H 0.105 0.895 44 H 0.076 0.924 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.498 4.151 -9.748 14.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.202 4.202 3 C -0.137 4.137 4 C -0.159 4.159 5 C 0.386 3.614 6 O -0.444 6.444 7 N -0.349 5.349 8 C 0.005 3.995 9 C 0.094 3.906 10 H 0.089 0.911 11 N -0.359 5.359 12 C -0.364 4.364 13 H 0.093 0.907 14 C -0.256 4.256 15 N -0.614 5.614 16 Si 0.794 3.206 17 H -0.222 1.222 18 H -0.224 1.224 19 H -0.193 1.193 20 C -0.104 4.104 21 C -0.129 4.129 22 C -0.154 4.154 23 C -0.148 4.148 24 C -0.143 4.143 25 C -0.144 4.144 26 O -0.072 6.072 27 C -0.040 4.040 28 C -0.134 4.134 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.183 0.817 33 H 0.249 0.751 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.207 0.793 37 H 0.058 0.942 38 H 0.113 0.887 39 H 0.146 0.854 40 H 0.163 0.837 41 H 0.166 0.834 42 H 0.152 0.848 43 H 0.123 0.877 44 H 0.095 0.905 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.170 4.643 -9.818 14.214 hybrid contribution 0.576 -1.075 0.960 1.552 sum -8.594 3.568 -8.858 12.847 Atomic orbital electron populations 1.20287 0.85759 1.03963 1.03368 1.20607 0.99265 0.90570 1.09794 1.22062 0.90258 1.01398 1.00001 1.21840 0.96182 0.80852 1.17030 1.16762 0.81910 0.86185 0.76552 1.90805 1.86709 1.13301 1.53594 1.45881 1.04917 1.11651 1.72420 1.21582 0.82660 0.92981 1.02229 1.19543 0.89625 0.89042 0.92351 0.91129 1.42491 1.59409 1.16965 1.17035 1.19474 1.22659 0.93704 1.00562 0.90728 1.25385 1.01862 1.01915 0.96441 1.69807 1.46602 1.37894 1.07137 0.85287 0.77556 0.80212 0.77568 1.22180 1.22420 1.19310 1.20810 0.98565 0.97179 0.93836 1.20948 0.97510 0.97244 0.97176 1.21344 0.95280 0.99072 0.99736 1.21396 1.00312 1.00635 0.92430 1.21416 0.96654 0.97793 0.98448 1.21281 0.95857 0.99190 0.98113 1.84060 1.30521 1.21507 1.71115 1.23525 0.79816 0.99267 1.01351 1.20651 1.02887 0.84537 1.05346 0.89998 0.89552 0.90860 0.81737 0.75085 0.89542 0.92621 0.79344 0.94183 0.88702 0.85412 0.83728 0.83448 0.84766 0.87688 0.90500 0.86361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 10.17 71.23 0.72 -0.38 16 2 C -0.20 -4.72 6.14 -20.06 -0.12 -4.84 16 3 C -0.12 -3.37 10.57 22.39 0.24 -3.13 16 4 C -0.11 -3.68 7.13 24.07 0.17 -3.51 16 5 C 0.60 22.59 7.79 86.44 0.67 23.27 16 6 O -0.56 -23.34 16.86 -4.33 -0.07 -23.41 16 7 N -0.70 -25.78 5.38 -467.09 -2.51 -28.29 16 8 C 0.13 4.64 5.21 86.38 0.45 5.09 16 9 C 0.20 7.76 2.64 44.25 0.12 7.87 16 10 H 0.07 2.61 7.94 -2.39 -0.02 2.59 16 11 N -0.72 -34.02 3.81 -326.50 -1.25 -35.27 16 12 C -0.23 -12.21 9.92 84.03 0.83 -11.37 16 13 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 14 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 15 N -0.96 -57.31 13.06 21.65 0.28 -57.03 16 16 Si 0.96 45.18 29.55 68.60 2.03 47.20 16 17 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 18 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 20 C -0.10 -3.64 4.92 -19.86 -0.10 -3.74 16 21 C -0.11 -4.18 9.32 22.27 0.21 -3.97 16 22 C -0.14 -4.33 10.05 22.27 0.22 -4.10 16 23 C -0.13 -3.46 10.05 22.27 0.22 -3.24 16 24 C -0.13 -3.27 10.05 22.27 0.22 -3.05 16 25 C -0.13 -3.80 9.67 22.27 0.22 -3.58 16 26 O -0.18 -5.77 10.40 -5.10 -0.05 -5.82 16 27 C 0.01 0.32 7.31 24.97 0.18 0.50 16 28 C -0.08 -1.22 10.21 71.23 0.73 -0.50 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 0.89 7.13 -2.38 -0.02 0.87 16 31 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.17 4.34 8.06 -2.91 -0.02 4.32 16 33 H 0.41 15.81 7.90 -92.71 -0.73 15.08 16 34 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.37 19.57 7.80 -92.71 -0.72 18.85 16 37 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 38 H 0.09 4.04 7.73 -2.91 -0.02 4.02 16 39 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 40 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 41 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 42 H 0.13 3.44 8.04 -2.91 -0.02 3.42 16 43 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 44 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.12 1.17 7.13 -2.39 -0.02 1.16 16 Total: -1.00 -69.07 387.91 3.44 -65.62 By element: Atomic # 1 Polarization: 49.13 SS G_CDS: -0.44 Total: 48.70 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 5.46 Total: -11.71 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -3.48 Total: -120.59 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.13 Total: -29.23 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -69.07 3.44 -65.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753297947.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.692 kcal (2) G-P(sol) polarization free energy of solvation -69.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds