Wall clock time and date at job start Tue Mar 31 2020 15:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40368 * 126.44494 * 2 1 4 4 C 1.36545 * 106.70939 * 180.02562 * 3 2 1 5 5 C 1.46651 * 125.98594 * 180.02562 * 4 3 2 6 6 O 1.21696 * 120.00293 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00080 * 180.26879 * 5 4 3 8 8 C 1.46500 * 120.00476 * 179.72234 * 7 5 4 9 9 C 1.52998 * 109.47530 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.46998 * 295.00179 * 9 8 7 11 11 N 1.46502 * 109.46898 * 54.99976 * 9 8 7 12 12 C 1.36932 * 119.99833 * 54.93888 * 11 9 8 13 13 H 1.07995 * 120.00667 * 5.46350 * 12 11 9 14 14 C 1.38817 * 119.99575 * 185.45817 * 12 11 9 15 15 N 1.31615 * 120.00248 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99795 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47040 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47259 * 119.99865 * 16 14 12 19 19 H 1.48500 * 109.47608 * 240.00320 * 16 14 12 20 20 C 1.50692 * 109.47381 * 175.00225 * 9 8 7 21 21 C 1.38238 * 120.00093 * 206.65280 * 20 9 8 22 22 C 1.38239 * 119.99832 * 179.78239 * 21 20 9 23 23 C 1.38231 * 120.00244 * 0.44628 * 22 21 20 24 24 C 1.38234 * 119.99927 * 359.80849 * 23 22 21 25 25 C 1.38231 * 120.00201 * 359.97438 * 24 23 22 26 26 O 1.34909 * 108.02161 * 0.25965 * 4 3 2 27 27 C 1.33931 * 109.38703 * 359.56378 * 26 4 3 28 28 C 1.50704 * 125.61221 * 180.16902 * 27 26 4 29 29 H 1.08998 * 109.47334 * 89.97616 * 1 2 3 30 30 H 1.08998 * 109.47299 * 209.97386 * 1 2 3 31 31 H 1.08997 * 109.47266 * 329.97819 * 1 2 3 32 32 H 1.08003 * 126.64492 * 0.03777 * 3 2 1 33 33 H 0.97006 * 119.99804 * 359.72558 * 7 5 4 34 34 H 1.09005 * 109.46907 * 300.00310 * 8 7 5 35 35 H 1.09001 * 109.47020 * 59.99957 * 8 7 5 36 36 H 0.96998 * 119.99661 * 234.93685 * 11 9 8 37 37 H 0.97005 * 119.99603 * 179.97438 * 15 14 12 38 38 H 1.07995 * 120.00207 * 359.97438 * 21 20 9 39 39 H 1.08004 * 120.00062 * 180.27095 * 22 21 20 40 40 H 1.08002 * 120.00457 * 179.83082 * 23 22 21 41 41 H 1.07996 * 120.00427 * 180.02562 * 24 23 22 42 42 H 1.08003 * 120.00602 * 180.02562 * 25 24 23 43 43 H 1.09006 * 109.47232 * 270.31026 * 28 27 26 44 44 H 1.08992 * 109.47397 * 30.31638 * 28 27 26 45 45 H 1.09003 * 109.46869 * 150.32170 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6260 0.6681 -0.0006 5 6 4.8378 1.4940 -0.0003 6 8 4.7471 2.7076 0.0001 7 7 6.0520 0.9092 -0.0064 8 6 7.2626 1.7342 -0.0122 9 6 8.4964 0.8295 -0.0192 10 1 8.5374 0.2639 0.9117 11 7 8.4159 -0.0975 -1.1507 12 6 8.2495 0.3857 -2.4211 13 1 8.2662 1.4506 -2.6004 14 6 8.0596 -0.4932 -3.4787 15 7 8.0390 -1.7910 -3.2602 16 14 7.8320 0.1659 -5.2116 17 1 7.8950 1.6494 -5.1892 18 1 8.9092 -0.3615 -6.0873 19 1 6.5116 -0.2660 -5.7362 20 6 9.7378 1.6739 -0.1489 21 6 10.8803 1.1407 -0.7159 22 6 12.0176 1.9168 -0.8390 23 6 12.0154 3.2231 -0.3868 24 6 10.8746 3.7546 0.1849 25 6 9.7358 2.9801 0.3040 26 8 3.5857 -0.6804 -0.0067 27 6 2.3096 -1.0870 -0.0005 28 6 1.8455 -2.5208 -0.0007 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3633 0.8898 0.5142 32 1 2.0266 2.1625 0.0006 33 1 6.1244 -0.0582 -0.0070 34 1 7.2690 2.3636 -0.9022 35 1 7.2779 2.3632 0.8778 36 1 8.4804 -1.0535 -1.0000 37 1 7.9059 -2.4051 -3.9992 38 1 10.8834 0.1189 -1.0654 39 1 12.9089 1.5016 -1.2859 40 1 12.9048 3.8285 -0.4805 41 1 10.8726 4.7752 0.5379 42 1 8.8443 3.3954 0.7503 43 1 1.7332 -2.8662 -1.0284 44 1 2.5804 -3.1407 0.5127 45 1 0.8869 -2.5925 0.5134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753297948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:33 Heat of formation + Delta-G solvation = -6.840418 kcal Electronic energy + Delta-G solvation = -27544.272738 eV Core-core repulsion = 23720.715822 eV Total energy + Delta-G solvation = -3823.556916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.74840 -40.79112 -40.00488 -37.48581 -35.58957 -35.05633 -33.69973 -32.94777 -31.81378 -31.08960 -29.72101 -29.01022 -27.18910 -26.07631 -24.13496 -23.31919 -22.73419 -22.16920 -21.37993 -20.54308 -19.37583 -18.85193 -17.82166 -17.58608 -16.95368 -16.85905 -16.50246 -16.24114 -15.74484 -15.68208 -15.53174 -14.96865 -14.82203 -14.60294 -14.18099 -14.13407 -14.03459 -13.91488 -13.70253 -13.62434 -13.53483 -13.46248 -13.07631 -12.95199 -12.92826 -12.55632 -12.44326 -12.07686 -11.95887 -11.87053 -11.53152 -11.44508 -11.01693 -10.73862 -10.13506 -9.65970 -9.49011 -9.34623 -9.03943 -7.95291 -5.22725 0.00234 0.60180 0.67700 1.28127 1.38163 1.42084 1.48262 1.63472 2.09067 2.27514 2.52423 3.02990 3.38165 3.61389 3.80306 3.82714 3.89041 3.98558 4.19222 4.25673 4.30636 4.32894 4.38585 4.46304 4.48638 4.62621 4.65617 4.70842 4.77237 4.83828 4.89560 4.91399 5.05991 5.07280 5.08236 5.10968 5.23781 5.32132 5.36251 5.55172 5.58733 5.71529 5.76430 5.89154 5.95619 6.25425 6.29450 6.48048 7.01923 7.35975 8.00684 8.28939 9.26697 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011406 B = 0.003766 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.270603 B = 7432.298267 C = 8876.154944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.202 4.202 3 C -0.121 4.121 4 C -0.104 4.104 5 C 0.594 3.406 6 O -0.567 6.567 7 N -0.687 5.687 8 C 0.124 3.876 9 C 0.200 3.800 10 H 0.095 0.905 11 N -0.715 5.715 12 C -0.205 4.205 13 H 0.058 0.942 14 C -0.058 4.058 15 N -0.956 5.956 16 Si 0.942 3.058 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.299 1.299 20 C -0.096 4.096 21 C -0.101 4.101 22 C -0.137 4.137 23 C -0.131 4.131 24 C -0.129 4.129 25 C -0.133 4.133 26 O -0.174 6.174 27 C 0.011 3.989 28 C -0.077 4.077 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.163 0.837 33 H 0.409 0.591 34 H 0.043 0.957 35 H 0.081 0.919 36 H 0.380 0.620 37 H 0.249 0.751 38 H 0.105 0.895 39 H 0.129 0.871 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.129 0.871 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.855 2.142 11.053 13.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.203 4.203 3 C -0.142 4.142 4 C -0.156 4.156 5 C 0.382 3.618 6 O -0.450 6.450 7 N -0.335 5.335 8 C -0.002 4.002 9 C 0.090 3.910 10 H 0.113 0.887 11 N -0.354 5.354 12 C -0.337 4.337 13 H 0.076 0.924 14 C -0.251 4.251 15 N -0.607 5.607 16 Si 0.774 3.226 17 H -0.205 1.205 18 H -0.219 1.219 19 H -0.226 1.226 20 C -0.099 4.099 21 C -0.119 4.119 22 C -0.155 4.155 23 C -0.148 4.148 24 C -0.146 4.146 25 C -0.152 4.152 26 O -0.070 6.070 27 C -0.041 4.041 28 C -0.133 4.133 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.180 0.820 33 H 0.245 0.755 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.213 0.787 37 H 0.058 0.942 38 H 0.123 0.877 39 H 0.147 0.853 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.147 0.853 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.637 2.897 10.900 13.621 hybrid contribution 0.160 -0.392 -1.503 1.562 sum -7.477 2.505 9.396 12.267 Atomic orbital electron populations 1.20281 0.85779 1.04156 1.03118 1.20608 0.99265 0.90604 1.09851 1.22052 0.90398 1.01352 1.00403 1.21884 0.96240 0.80872 1.16604 1.16775 0.82067 0.86197 0.76796 1.90786 1.86751 1.13429 1.54032 1.45670 1.04859 1.11405 1.71532 1.21803 0.83999 0.93491 1.00860 1.19499 0.89452 0.90394 0.91646 0.88706 1.42380 1.86420 1.04823 1.01746 1.19081 1.38227 0.91254 0.85128 0.92399 1.25150 1.04088 0.95640 1.00183 1.69744 1.58956 1.01094 1.30872 0.85536 0.76672 0.77527 0.82885 1.20488 1.21893 1.22642 1.20605 0.95834 0.95172 0.98262 1.20990 0.92962 1.00224 0.97739 1.21361 0.98254 0.95179 1.00656 1.21383 0.99169 0.95271 0.99015 1.21382 0.92897 1.00489 0.99874 1.21312 0.99265 0.93535 1.01060 1.84042 1.30489 1.21439 1.71073 1.23534 0.79827 0.99285 1.01456 1.20645 1.03178 0.84463 1.04995 0.90641 0.89158 0.90674 0.81975 0.75471 0.93829 0.90068 0.78662 0.94229 0.87699 0.85296 0.83890 0.83884 0.85275 0.88737 0.89748 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 10.17 71.23 0.72 -0.45 16 2 C -0.20 -4.99 6.14 -20.06 -0.12 -5.11 16 3 C -0.12 -3.72 10.57 22.39 0.24 -3.49 16 4 C -0.10 -3.75 7.13 24.07 0.17 -3.57 16 5 C 0.59 23.70 7.79 86.44 0.67 24.37 16 6 O -0.57 -24.92 16.86 -4.34 -0.07 -25.00 16 7 N -0.69 -26.28 5.38 -467.11 -2.51 -28.79 16 8 C 0.12 4.59 3.87 86.38 0.33 4.92 16 9 C 0.20 7.32 3.26 44.24 0.14 7.46 16 10 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 11 N -0.71 -32.23 3.82 -326.52 -1.25 -33.48 16 12 C -0.20 -10.70 8.52 84.04 0.72 -9.98 16 13 H 0.06 3.16 7.19 -2.91 -0.02 3.14 16 14 C -0.06 -3.20 5.50 84.86 0.47 -2.73 16 15 N -0.96 -55.43 13.07 21.65 0.28 -55.14 16 16 Si 0.94 46.85 29.55 68.60 2.03 48.88 16 17 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 18 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 19 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 20 C -0.10 -3.41 5.19 -19.87 -0.10 -3.52 16 21 C -0.10 -3.70 9.03 22.27 0.20 -3.50 16 22 C -0.14 -4.24 10.05 22.27 0.22 -4.02 16 23 C -0.13 -3.49 10.05 22.27 0.22 -3.27 16 24 C -0.13 -3.46 10.05 22.27 0.22 -3.24 16 25 C -0.13 -4.12 9.14 22.27 0.20 -3.91 16 26 O -0.17 -5.87 10.40 -4.99 -0.05 -5.92 16 27 C 0.01 0.29 7.31 24.97 0.18 0.47 16 28 C -0.08 -1.22 10.21 71.24 0.73 -0.50 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 0.93 7.13 -2.39 -0.02 0.92 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.16 4.61 8.06 -2.91 -0.02 4.59 16 33 H 0.41 15.67 7.89 -92.70 -0.73 14.94 16 34 H 0.04 1.88 7.30 -2.38 -0.02 1.87 16 35 H 0.08 2.66 6.85 -2.39 -0.02 2.64 16 36 H 0.38 18.30 8.04 -92.71 -0.75 17.55 16 37 H 0.25 14.24 8.31 -92.70 -0.77 13.47 16 38 H 0.10 4.32 7.51 -2.91 -0.02 4.29 16 39 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 40 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 41 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 42 H 0.13 3.62 6.22 -2.91 -0.02 3.60 16 43 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 44 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.12 1.13 7.13 -2.39 -0.02 1.11 16 Total: -1.00 -68.65 380.88 3.20 -65.45 By element: Atomic # 1 Polarization: 44.51 SS G_CDS: -0.45 Total: 44.06 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 5.23 Total: -10.05 kcal Atomic # 7 Polarization: -113.94 SS G_CDS: -3.48 Total: -117.42 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.13 Total: -30.92 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -68.65 3.20 -65.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753297948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.606 kcal (2) G-P(sol) polarization free energy of solvation -68.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds