Wall clock time and date at job start Tue Mar 31 2020 15:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34181 * 127.02059 * 2 1 4 4 O 1.34214 * 109.12131 * 180.02562 * 3 2 1 5 5 C 1.33649 * 110.91059 * 359.97438 * 4 3 2 6 6 C 1.50708 * 125.80370 * 180.02562 * 5 4 3 7 7 C 1.36421 * 108.39581 * 359.71469 * 5 4 3 8 8 C 1.47381 * 127.18938 * 180.30663 * 7 5 4 9 9 O 1.21616 * 119.99873 * 270.14460 * 8 7 5 10 10 N 1.34771 * 120.00204 * 90.15313 * 8 7 5 11 11 C 1.46500 * 120.00275 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47441 * 180.02562 * 11 10 8 13 13 C 1.38241 * 119.99804 * 269.72840 * 12 11 10 14 14 C 1.38231 * 119.99972 * 179.76471 * 13 12 11 15 15 C 1.38242 * 120.00208 * 0.48362 * 14 13 12 16 16 C 1.50694 * 120.00255 * 179.76719 * 15 14 13 17 17 N 1.46500 * 109.47227 * 270.02114 * 16 15 14 18 18 C 1.36935 * 119.99905 * 180.02562 * 17 16 15 19 19 H 1.08008 * 120.00168 * 359.97438 * 18 17 16 20 20 C 1.38816 * 120.00179 * 180.02562 * 18 17 16 21 21 N 1.31621 * 119.99503 * 359.97438 * 20 18 17 22 22 Si 1.86790 * 120.00320 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47377 * 59.99752 * 22 20 18 24 24 H 1.48492 * 109.47309 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47375 * 299.99921 * 22 20 18 26 26 C 1.38241 * 119.99590 * 359.78854 * 15 14 13 27 27 C 1.38231 * 120.00325 * 89.99363 * 12 11 10 28 28 H 1.09002 * 109.47152 * 90.02784 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.02885 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.02866 * 1 2 3 31 31 H 1.07997 * 125.43877 * 359.97438 * 3 2 1 32 32 H 1.08994 * 109.46602 * 359.96874 * 6 5 4 33 33 H 1.08995 * 109.46976 * 119.97260 * 6 5 4 34 34 H 1.09000 * 109.46962 * 239.97224 * 6 5 4 35 35 H 0.97007 * 120.00107 * 359.97438 * 10 8 7 36 36 H 1.09004 * 109.47047 * 299.99917 * 11 10 8 37 37 H 1.08996 * 109.47299 * 59.99426 * 11 10 8 38 38 H 1.07998 * 119.99932 * 359.97438 * 13 12 11 39 39 H 1.07995 * 120.00335 * 180.24879 * 14 13 12 40 40 H 1.09004 * 109.47250 * 30.02165 * 16 15 14 41 41 H 1.09004 * 109.47028 * 150.01605 * 16 15 14 42 42 H 0.96998 * 119.99851 * 359.97438 * 17 16 15 43 43 H 0.96999 * 119.99841 * 180.02562 * 21 20 18 44 44 H 1.07999 * 119.99608 * 179.97438 * 26 15 14 45 45 H 1.07999 * 119.99754 * 0.02562 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0006 5 6 3.6623 -0.6758 -0.0004 6 6 4.9292 -1.4920 -0.0003 7 6 2.3922 -1.1737 0.0068 8 6 1.9914 -2.5920 0.0158 9 8 1.8249 -3.1835 -1.0336 10 7 1.8093 -3.2333 1.1871 11 6 1.4103 -4.6429 1.1961 12 6 1.2745 -5.1175 2.6200 13 6 2.3627 -5.6664 3.2723 14 6 2.2395 -6.0973 4.5800 15 6 1.0255 -5.9885 5.2321 16 6 0.8898 -6.4631 6.6559 17 7 0.4908 -7.8727 6.6649 18 6 0.3047 -8.5239 7.8551 19 1 0.4525 -7.9985 8.7871 20 6 -0.0728 -9.8598 7.8637 21 7 -0.2524 -10.5001 6.7279 22 14 -0.3259 -10.7484 9.4870 23 1 -1.3947 -10.0685 10.2622 24 1 -0.7237 -12.1548 9.2247 25 1 0.9389 -10.7281 10.2650 26 6 -0.0642 -5.4448 4.5779 27 6 0.0604 -5.0091 3.2719 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 0.8903 0.5134 30 1 -0.3633 -0.8898 0.5143 31 1 1.9895 2.1011 -0.0004 32 1 5.7911 -0.8249 -0.0010 33 1 4.9566 -2.1203 0.8899 34 1 4.9561 -2.1212 -0.8900 35 1 1.9423 -2.7616 2.0242 36 1 0.4544 -4.7532 0.6840 37 1 2.1670 -5.2380 0.6849 38 1 3.3101 -5.7554 2.7614 39 1 3.0907 -6.5223 5.0909 40 1 1.8455 -6.3527 7.1684 41 1 0.1328 -5.8678 7.1667 42 1 0.3577 -8.3444 5.8279 43 1 -0.5165 -11.4334 6.7338 44 1 -1.0128 -5.3602 5.0872 45 1 -0.7909 -4.5846 2.7607 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753591257.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:30 Heat of formation + Delta-G solvation = -16.973454 kcal Electronic energy + Delta-G solvation = -26126.298424 eV Core-core repulsion = 22302.302107 eV Total energy + Delta-G solvation = -3823.996317 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.53910 -40.88710 -40.07988 -36.95509 -35.77860 -34.93493 -33.78521 -33.40955 -31.85722 -31.78956 -29.34053 -28.40113 -27.36651 -26.09751 -24.44917 -23.63177 -23.54514 -21.71362 -21.17962 -20.68312 -19.33307 -18.91290 -17.60243 -17.24444 -16.95025 -16.76815 -16.74663 -16.32881 -15.93038 -15.83675 -15.25741 -15.17855 -14.89421 -14.54438 -14.35595 -14.34391 -14.16514 -13.98655 -13.82883 -13.70913 -13.57810 -13.40219 -13.26309 -13.11249 -12.99804 -12.73190 -12.29752 -12.25070 -11.97158 -11.91558 -11.75340 -11.37006 -10.97803 -10.46018 -10.23757 -9.82312 -9.65895 -9.44313 -9.04047 -7.96104 -5.26604 0.22150 0.50339 0.62649 1.23625 1.38782 1.47294 1.50632 1.56912 1.88838 2.26187 2.55521 2.88978 3.36773 3.53266 3.60791 3.76263 3.88259 3.97823 4.04294 4.13204 4.20628 4.24038 4.27216 4.37536 4.55684 4.56013 4.60860 4.67068 4.69228 4.74411 4.76571 4.89127 4.89177 4.97491 5.01276 5.06500 5.19481 5.20197 5.25895 5.45021 5.46249 5.46840 5.58830 5.80905 6.05592 6.07284 6.24413 6.40856 7.07419 7.31035 8.04077 8.29143 9.26919 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025919 B = 0.001911 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.030548 B =14648.647799 C =14729.268372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.170 4.170 3 C -0.031 4.031 4 O -0.178 6.178 5 C 0.043 3.957 6 C -0.084 4.084 7 C -0.261 4.261 8 C 0.598 3.402 9 O -0.576 6.576 10 N -0.701 5.701 11 C 0.170 3.830 12 C -0.110 4.110 13 C -0.096 4.096 14 C -0.115 4.115 15 C -0.086 4.086 16 C 0.185 3.815 17 N -0.739 5.739 18 C -0.249 4.249 19 H 0.079 0.921 20 C -0.076 4.076 21 N -0.969 5.969 22 Si 0.978 3.022 23 H -0.276 1.276 24 H -0.296 1.296 25 H -0.276 1.276 26 C -0.116 4.116 27 C -0.098 4.098 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.245 0.755 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.413 0.587 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.144 0.856 39 H 0.123 0.877 40 H 0.031 0.969 41 H 0.030 0.970 42 H 0.373 0.627 43 H 0.252 0.748 44 H 0.121 0.879 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.576 26.058 -14.428 30.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.172 4.172 3 C -0.096 4.096 4 O -0.075 6.075 5 C -0.009 4.009 6 C -0.140 4.140 7 C -0.265 4.265 8 C 0.385 3.615 9 O -0.456 6.456 10 N -0.352 5.352 11 C 0.047 3.953 12 C -0.111 4.111 13 C -0.115 4.115 14 C -0.134 4.134 15 C -0.087 4.087 16 C 0.060 3.940 17 N -0.382 5.382 18 C -0.381 4.381 19 H 0.096 0.904 20 C -0.268 4.268 21 N -0.620 5.620 22 Si 0.806 3.194 23 H -0.202 1.202 24 H -0.222 1.222 25 H -0.202 1.202 26 C -0.134 4.134 27 C -0.117 4.117 28 H 0.088 0.912 29 H 0.113 0.887 30 H 0.075 0.925 31 H 0.261 0.739 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.249 0.751 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.162 0.838 39 H 0.141 0.859 40 H 0.049 0.951 41 H 0.048 0.952 42 H 0.205 0.795 43 H 0.060 0.940 44 H 0.139 0.861 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.691 25.797 -14.962 30.798 hybrid contribution -0.587 -1.038 0.965 1.534 sum 7.104 24.759 -13.997 29.315 Atomic orbital electron populations 1.20222 0.87701 1.03540 1.02642 1.21644 0.97720 0.90448 1.07390 1.24353 0.78660 1.00804 1.05778 1.83756 1.30474 1.21675 1.71549 1.22962 0.96468 0.81130 1.00305 1.20590 0.90676 0.98016 1.04677 1.21070 0.94524 0.93514 1.17392 1.17480 0.75663 0.85124 0.83264 1.90792 1.52804 1.68777 1.33244 1.46019 1.68754 1.11896 1.08513 1.20126 1.01490 0.81106 0.92534 1.19756 0.94141 1.01874 0.95299 1.21208 0.99111 0.97381 0.93776 1.21180 0.97232 0.99500 0.95458 1.20175 0.94547 0.97720 0.96223 1.19767 0.97518 0.84971 0.91782 1.42536 1.82900 1.07386 1.05374 1.19635 1.37859 0.93524 0.87054 0.90359 1.25636 1.03029 0.97830 1.00338 1.69832 1.55283 1.10441 1.26411 0.85153 0.78201 0.77057 0.78983 1.20245 1.22193 1.20207 1.21167 0.98135 0.98696 0.95438 1.21190 0.97686 0.98933 0.93864 0.91226 0.88650 0.92547 0.73921 0.87984 0.88121 0.89327 0.75095 0.90712 0.90229 0.83795 0.85909 0.95116 0.95213 0.79504 0.93950 0.86056 0.84181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.38 71.24 0.74 -0.38 16 2 C -0.17 -2.83 6.38 -18.49 -0.12 -2.95 16 3 C -0.03 -0.38 11.96 66.89 0.80 0.42 16 4 O -0.18 -2.83 10.52 4.51 0.05 -2.78 16 5 C 0.04 0.74 7.37 25.26 0.19 0.93 16 6 C -0.08 -0.94 10.18 71.24 0.72 -0.22 16 7 C -0.26 -5.26 6.07 -18.99 -0.12 -5.38 16 8 C 0.60 13.94 7.41 86.65 0.64 14.59 16 9 O -0.58 -18.07 17.11 -4.08 -0.07 -18.14 16 10 N -0.70 -13.15 5.54 -470.15 -2.61 -15.76 16 11 C 0.17 3.44 5.80 85.63 0.50 3.93 16 12 C -0.11 -2.45 5.25 -19.87 -0.10 -2.56 16 13 C -0.10 -2.27 9.70 22.27 0.22 -2.06 16 14 C -0.12 -3.39 9.70 22.27 0.22 -3.17 16 15 C -0.09 -2.89 5.25 -19.86 -0.10 -2.99 16 16 C 0.19 7.51 6.38 85.63 0.55 8.06 16 17 N -0.74 -38.22 5.59 -347.17 -1.94 -40.16 16 18 C -0.25 -14.00 9.99 84.03 0.84 -13.17 16 19 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 20 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 21 N -0.97 -59.95 13.06 21.65 0.28 -59.67 16 22 Si 0.98 46.11 29.55 68.60 2.03 48.13 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 24 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 26 C -0.12 -3.46 9.70 22.27 0.22 -3.24 16 27 C -0.10 -2.38 9.70 22.27 0.22 -2.16 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.24 0.84 8.06 -2.91 -0.02 0.82 16 32 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.41 6.45 8.45 -92.70 -0.78 5.67 16 36 H 0.07 1.59 8.09 -2.38 -0.02 1.57 16 37 H 0.08 1.62 8.08 -2.39 -0.02 1.60 16 38 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 39 H 0.12 3.57 8.06 -2.91 -0.02 3.55 16 40 H 0.03 1.23 8.09 -2.38 -0.02 1.21 16 41 H 0.03 1.19 8.09 -2.38 -0.02 1.17 16 42 H 0.37 20.82 7.66 -92.71 -0.71 20.11 16 43 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 44 H 0.12 3.60 8.06 -2.91 -0.02 3.58 16 45 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -74.36 393.16 3.13 -71.23 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: -0.48 Total: 31.42 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: 5.87 Total: -14.28 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -4.27 Total: -115.58 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.02 Total: -20.92 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -74.36 3.13 -71.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753591257.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.260 kcal (2) G-P(sol) polarization free energy of solvation -74.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds