Wall clock time and date at job start Tue Mar 31 2020 15:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 110.88877 * 2 1 4 4 C 1.34777 * 119.99525 * 59.29809 * 3 2 1 5 5 O 1.21283 * 120.00463 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99675 * 179.72583 * 4 3 2 7 7 C 1.50703 * 109.47148 * 180.28037 * 6 4 3 8 8 C 1.33995 * 126.90365 * 265.02458 * 7 6 4 9 9 O 1.34448 * 110.15404 * 179.97438 * 8 7 6 10 10 C 1.34807 * 110.88884 * 359.97438 * 9 8 7 11 11 C 1.38946 * 133.49200 * 180.02562 * 10 9 8 12 12 C 1.37850 * 119.81303 * 179.97438 * 11 10 9 13 13 C 1.38738 * 120.68916 * 0.02562 * 12 11 10 14 14 C 1.36739 * 120.41580 * 0.02562 * 13 12 11 15 15 C 1.39407 * 119.72001 * 359.68338 * 14 13 12 16 16 C 1.55164 * 111.00046 * 236.12231 * 2 1 3 17 17 C 1.54434 * 102.89166 * 206.40763 * 16 2 1 18 18 N 1.47029 * 107.27855 * 22.18682 * 17 16 2 19 19 C 1.36933 * 125.64286 * 181.02835 * 18 17 16 20 20 H 1.07999 * 119.99885 * 180.02562 * 19 18 17 21 21 C 1.38816 * 120.00283 * 0.03600 * 19 18 17 22 22 N 1.31615 * 120.00094 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99797 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47000 * 90.00387 * 23 21 19 25 25 H 1.48499 * 109.46973 * 210.00254 * 23 21 19 26 26 H 1.48495 * 109.47407 * 330.00178 * 23 21 19 27 27 C 1.47418 * 108.70389 * 1.06067 * 18 17 16 28 28 H 1.09004 * 109.47526 * 60.69728 * 1 2 3 29 29 H 1.09003 * 109.47234 * 180.69785 * 1 2 3 30 30 H 1.09002 * 109.47483 * 300.69934 * 1 2 3 31 31 H 0.97000 * 120.00580 * 239.30555 * 3 2 1 32 32 H 1.09009 * 109.47352 * 300.27556 * 6 4 3 33 33 H 1.08998 * 109.47585 * 60.27844 * 6 4 3 34 34 H 1.08002 * 124.92578 * 359.97438 * 8 7 6 35 35 H 1.08000 * 120.09182 * 0.02562 * 11 10 9 36 36 H 1.08001 * 119.65262 * 179.97438 * 12 11 10 37 37 H 1.08001 * 119.79340 * 179.97438 * 13 12 11 38 38 H 1.08003 * 120.14292 * 179.97438 * 14 13 12 39 39 H 1.08997 * 110.71825 * 324.74940 * 16 2 1 40 40 H 1.08997 * 110.72020 * 88.02645 * 16 2 1 41 41 H 1.08994 * 109.87179 * 262.77028 * 17 16 2 42 42 H 1.08990 * 109.87647 * 141.60842 * 17 16 2 43 43 H 0.96997 * 120.00348 * 179.97438 * 22 21 19 44 44 H 1.09000 * 110.36769 * 217.03413 * 27 18 17 45 45 H 1.08997 * 110.37016 * 94.71313 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7358 2.2107 1.0037 5 8 1.0189 1.8352 1.9070 6 6 2.2781 3.6167 1.0069 7 6 1.7839 4.3429 2.2315 8 6 0.7092 5.1386 2.3161 9 8 0.5800 5.6111 3.5682 10 6 1.5651 5.1452 4.3617 11 6 1.8789 5.3264 5.7031 12 6 2.9820 4.6977 6.2399 13 6 3.7854 3.8840 5.4543 14 6 3.4946 3.6933 4.1319 15 6 2.3797 4.3160 3.5726 16 6 2.0861 -0.8075 -1.2027 17 6 3.4683 -1.2733 -0.6953 18 7 3.4274 -1.2421 0.7741 19 6 4.4642 -1.5651 1.6082 20 1 4.3331 -1.5102 2.6788 21 6 5.6838 -1.9628 1.0778 22 7 5.8439 -2.0290 -0.2269 23 14 7.0979 -2.4041 2.2159 24 1 7.0445 -3.8540 2.5324 25 1 8.3868 -2.0902 1.5485 26 1 6.9865 -1.6188 3.4713 27 6 2.0852 -0.8063 1.2005 28 1 -0.3634 0.5030 -0.8962 29 1 -0.3634 -1.0276 0.0125 30 1 -0.3634 0.5247 0.8836 31 1 2.6259 1.6690 -0.7223 32 1 3.3677 3.5859 1.0178 33 1 1.9383 4.1393 0.1127 34 1 0.0432 5.3674 1.4972 35 1 1.2599 5.9574 6.3236 36 1 3.2237 4.8407 7.2828 37 1 4.6464 3.3987 5.8897 38 1 4.1233 3.0593 3.5242 39 1 1.4470 -1.6630 -1.4212 40 1 2.1915 -0.1693 -2.0799 41 1 4.2431 -0.5985 -1.0590 42 1 3.6664 -2.2884 -1.0392 43 1 6.6962 -2.3065 -0.5976 44 1 2.1553 -0.1715 2.0838 45 1 1.4522 -1.6703 1.4025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754681347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:41 Heat of formation + Delta-G solvation = 22.089737 kcal Electronic energy + Delta-G solvation = -28278.570706 eV Core-core repulsion = 24456.268296 eV Total energy + Delta-G solvation = -3822.302410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.43156 -39.75246 -37.81285 -37.31711 -33.99435 -33.75715 -31.92460 -30.59254 -30.16863 -29.64623 -28.67848 -27.61154 -25.64662 -23.67768 -23.29425 -22.27849 -21.47373 -20.26525 -19.66568 -18.97568 -17.36626 -17.22906 -16.87366 -16.52618 -15.88129 -15.76733 -15.43366 -14.90822 -14.62435 -14.12868 -13.86912 -13.75702 -13.68298 -13.29524 -13.11252 -12.78712 -12.57276 -12.24878 -12.22027 -11.96828 -11.89440 -11.79267 -11.64257 -11.47451 -10.89148 -10.88519 -10.83973 -10.37115 -10.34329 -10.08985 -10.02797 -9.94180 -9.64886 -9.18349 -8.63153 -8.59656 -8.49077 -8.12010 -6.78837 -5.70117 -3.01719 0.94922 1.40418 2.30183 2.80452 3.02245 3.40288 3.45921 3.47277 3.59633 3.81224 4.45575 4.51509 4.55772 4.85143 4.97054 4.99864 5.09588 5.26329 5.34603 5.40779 5.41955 5.47052 5.49557 5.51994 5.61500 5.64410 5.74343 5.94232 6.03410 6.15889 6.17490 6.23941 6.28995 6.37840 6.41199 6.44600 6.51640 6.56356 6.65956 6.70729 6.84592 7.17667 7.18024 7.55590 7.57506 7.80905 7.96393 8.27147 8.66003 9.24696 9.84785 10.51176 11.41949 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011302 B = 0.004152 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.838840 B = 6741.924180 C = 8631.713127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.158 3.842 3 N -0.703 5.703 4 C 0.516 3.484 5 O -0.531 6.531 6 C -0.072 4.072 7 C -0.148 4.148 8 C 0.011 3.989 9 O -0.195 6.195 10 C 0.049 3.951 11 C -0.112 4.112 12 C -0.096 4.096 13 C -0.137 4.137 14 C -0.062 4.062 15 C -0.111 4.111 16 C -0.147 4.147 17 C 0.178 3.822 18 N -0.603 5.603 19 C -0.220 4.220 20 H 0.075 0.925 21 C -0.009 4.009 22 N -0.925 5.925 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.133 3.867 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.397 0.603 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.205 0.795 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.043 0.957 43 H 0.251 0.749 44 H 0.052 0.948 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.731 15.463 2.061 17.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.071 3.929 3 N -0.354 5.354 4 C 0.301 3.699 5 O -0.408 6.408 6 C -0.112 4.112 7 C -0.149 4.149 8 C -0.054 4.054 9 O -0.096 6.096 10 C 0.002 3.998 11 C -0.131 4.131 12 C -0.114 4.114 13 C -0.155 4.155 14 C -0.080 4.080 15 C -0.112 4.112 16 C -0.186 4.186 17 C 0.053 3.947 18 N -0.329 5.329 19 C -0.349 4.349 20 H 0.093 0.907 21 C -0.205 4.205 22 N -0.573 5.573 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.006 3.994 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.231 0.769 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.221 0.779 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -9.220 15.279 2.795 18.064 hybrid contribution 1.224 -0.383 -0.020 1.283 sum -7.996 14.896 2.775 17.133 Atomic orbital electron populations 1.22000 0.94462 1.02072 1.02306 1.21451 0.92492 0.80956 0.98016 1.45800 1.51671 1.12229 1.25661 1.20309 0.80950 0.86714 0.81903 1.90668 1.37334 1.77423 1.35358 1.20011 1.02833 0.92878 0.95520 1.20422 0.98202 1.02340 0.93971 1.23598 0.98509 0.98233 0.85085 1.83972 1.45029 1.61441 1.19192 1.19589 0.89220 0.97959 0.93040 1.19868 0.99376 1.03688 0.90139 1.20898 0.94001 0.96661 0.99847 1.20794 1.00842 1.00078 0.93778 1.20396 0.95077 0.97228 0.95264 1.19718 0.97764 1.00536 0.93159 1.23245 1.00495 0.98893 0.95923 1.21160 0.89953 0.99847 0.83705 1.44440 1.07788 1.78898 1.01791 1.19053 0.89334 1.37517 0.88965 0.90680 1.24745 0.97704 1.02072 0.95974 1.69943 1.24081 1.54112 1.09159 0.86155 0.81999 0.78282 0.79596 1.21654 1.21734 1.20772 1.21861 0.87504 0.94818 0.95218 0.93273 0.92032 0.90782 0.76868 0.87776 0.88112 0.77878 0.85359 0.85015 0.85356 0.85392 0.90996 0.91790 0.93663 0.93930 0.93900 0.92956 0.95923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.57 37.16 0.32 -1.99 16 2 C 0.16 2.76 0.82 -129.67 -0.11 2.66 16 3 N -0.70 -11.01 5.18 -45.62 -0.24 -11.24 16 4 C 0.52 8.22 7.20 -10.98 -0.08 8.14 16 5 O -0.53 -10.37 12.84 5.55 0.07 -10.30 16 6 C -0.07 -0.88 6.25 -29.03 -0.18 -1.06 16 7 C -0.15 -2.01 4.85 -102.66 -0.50 -2.51 16 8 C 0.01 0.13 11.89 29.24 0.35 0.47 16 9 O -0.19 -2.67 10.58 3.92 0.04 -2.63 16 10 C 0.05 0.70 7.42 -38.47 -0.29 0.42 16 11 C -0.11 -1.35 10.07 -39.46 -0.40 -1.75 16 12 C -0.10 -1.07 10.01 -39.54 -0.40 -1.47 16 13 C -0.14 -1.73 9.98 -39.94 -0.40 -2.13 16 14 C -0.06 -0.91 10.05 -39.69 -0.40 -1.31 16 15 C -0.11 -1.68 6.38 -105.16 -0.67 -2.36 16 16 C -0.15 -2.57 5.99 -24.83 -0.15 -2.72 16 17 C 0.18 4.16 5.37 -3.00 -0.02 4.15 16 18 N -0.60 -15.39 3.39 -170.01 -0.58 -15.97 16 19 C -0.22 -6.21 10.28 -15.06 -0.15 -6.36 16 20 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 21 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 22 N -0.92 -26.76 10.31 55.49 0.57 -26.19 16 23 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 C 0.13 2.94 6.13 -2.53 -0.02 2.92 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 30 H 0.07 1.26 6.23 -51.93 -0.32 0.93 16 31 H 0.40 5.39 8.50 -40.82 -0.35 5.05 16 32 H 0.10 1.22 8.14 -51.92 -0.42 0.80 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.20 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 38 H 0.13 1.92 8.06 -52.48 -0.42 1.50 16 39 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 40 H 0.06 0.96 8.07 -51.93 -0.42 0.54 16 41 H 0.05 1.15 7.38 -51.93 -0.38 0.76 16 42 H 0.04 1.12 7.51 -51.93 -0.39 0.73 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.05 1.26 6.58 -51.93 -0.34 0.92 16 45 H 0.02 0.51 8.03 -51.93 -0.42 0.10 16 LS Contribution 369.24 15.07 5.56 5.56 Total: -1.00 -34.25 369.24 -9.15 -43.40 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.39 Total: 5.40 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -3.18 Total: -5.26 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.24 Total: -53.40 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.11 Total: -12.93 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.25 -9.15 -43.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754681347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.489 kcal (2) G-P(sol) polarization free energy of solvation -34.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds