Wall clock time and date at job start Tue Mar 31 2020 15:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 110.88877 * 2 1 4 4 C 1.34777 * 119.99525 * 59.29809 * 3 2 1 5 5 O 1.21283 * 120.00463 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99675 * 179.72583 * 4 3 2 7 7 C 1.50703 * 109.47148 * 180.28037 * 6 4 3 8 8 C 1.33995 * 126.90365 * 265.02458 * 7 6 4 9 9 O 1.34448 * 110.15404 * 179.97438 * 8 7 6 10 10 C 1.34807 * 110.88884 * 359.97438 * 9 8 7 11 11 C 1.38946 * 133.49200 * 180.02562 * 10 9 8 12 12 C 1.37850 * 119.81303 * 179.97438 * 11 10 9 13 13 C 1.38738 * 120.68916 * 0.02562 * 12 11 10 14 14 C 1.36739 * 120.41580 * 0.02562 * 13 12 11 15 15 C 1.39407 * 119.72001 * 359.68338 * 14 13 12 16 16 C 1.55164 * 111.00046 * 236.12231 * 2 1 3 17 17 C 1.54434 * 102.89166 * 206.40763 * 16 2 1 18 18 N 1.47029 * 107.27855 * 22.18682 * 17 16 2 19 19 C 1.36933 * 125.64286 * 181.02835 * 18 17 16 20 20 H 1.07999 * 119.99885 * 180.02562 * 19 18 17 21 21 C 1.38816 * 120.00283 * 0.03600 * 19 18 17 22 22 N 1.31615 * 120.00094 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99797 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47000 * 90.00387 * 23 21 19 25 25 H 1.48499 * 109.46973 * 210.00254 * 23 21 19 26 26 H 1.48495 * 109.47407 * 330.00178 * 23 21 19 27 27 C 1.47418 * 108.70389 * 1.06067 * 18 17 16 28 28 H 1.09004 * 109.47526 * 60.69728 * 1 2 3 29 29 H 1.09003 * 109.47234 * 180.69785 * 1 2 3 30 30 H 1.09002 * 109.47483 * 300.69934 * 1 2 3 31 31 H 0.97000 * 120.00580 * 239.30555 * 3 2 1 32 32 H 1.09009 * 109.47352 * 300.27556 * 6 4 3 33 33 H 1.08998 * 109.47585 * 60.27844 * 6 4 3 34 34 H 1.08002 * 124.92578 * 359.97438 * 8 7 6 35 35 H 1.08000 * 120.09182 * 0.02562 * 11 10 9 36 36 H 1.08001 * 119.65262 * 179.97438 * 12 11 10 37 37 H 1.08001 * 119.79340 * 179.97438 * 13 12 11 38 38 H 1.08003 * 120.14292 * 179.97438 * 14 13 12 39 39 H 1.08997 * 110.71825 * 324.74940 * 16 2 1 40 40 H 1.08997 * 110.72020 * 88.02645 * 16 2 1 41 41 H 1.08994 * 109.87179 * 262.77028 * 17 16 2 42 42 H 1.08990 * 109.87647 * 141.60842 * 17 16 2 43 43 H 0.96997 * 120.00348 * 179.97438 * 22 21 19 44 44 H 1.09000 * 110.36769 * 217.03413 * 27 18 17 45 45 H 1.08997 * 110.37016 * 94.71313 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7358 2.2107 1.0037 5 8 1.0189 1.8352 1.9070 6 6 2.2781 3.6167 1.0069 7 6 1.7839 4.3429 2.2315 8 6 0.7092 5.1386 2.3161 9 8 0.5800 5.6111 3.5682 10 6 1.5651 5.1452 4.3617 11 6 1.8789 5.3264 5.7031 12 6 2.9820 4.6977 6.2399 13 6 3.7854 3.8840 5.4543 14 6 3.4946 3.6933 4.1319 15 6 2.3797 4.3160 3.5726 16 6 2.0861 -0.8075 -1.2027 17 6 3.4683 -1.2733 -0.6953 18 7 3.4274 -1.2421 0.7741 19 6 4.4642 -1.5651 1.6082 20 1 4.3331 -1.5102 2.6788 21 6 5.6838 -1.9628 1.0778 22 7 5.8439 -2.0290 -0.2269 23 14 7.0979 -2.4041 2.2159 24 1 7.0445 -3.8540 2.5324 25 1 8.3868 -2.0902 1.5485 26 1 6.9865 -1.6188 3.4713 27 6 2.0852 -0.8063 1.2005 28 1 -0.3634 0.5030 -0.8962 29 1 -0.3634 -1.0276 0.0125 30 1 -0.3634 0.5247 0.8836 31 1 2.6259 1.6690 -0.7223 32 1 3.3677 3.5859 1.0178 33 1 1.9383 4.1393 0.1127 34 1 0.0432 5.3674 1.4972 35 1 1.2599 5.9574 6.3236 36 1 3.2237 4.8407 7.2828 37 1 4.6464 3.3987 5.8897 38 1 4.1233 3.0593 3.5242 39 1 1.4470 -1.6630 -1.4212 40 1 2.1915 -0.1693 -2.0799 41 1 4.2431 -0.5985 -1.0590 42 1 3.6664 -2.2884 -1.0392 43 1 6.6962 -2.3065 -0.5976 44 1 2.1553 -0.1715 2.0838 45 1 1.4522 -1.6703 1.4025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754681347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:40 Heat of formation + Delta-G solvation = 0.457423 kcal Electronic energy + Delta-G solvation = -28279.508753 eV Core-core repulsion = 24456.268296 eV Total energy + Delta-G solvation = -3823.240458 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.40323 -41.13007 -38.88173 -38.77198 -35.66635 -34.85630 -33.62228 -31.92215 -31.43188 -30.76172 -30.30969 -28.63314 -27.52142 -25.42693 -24.27869 -23.24487 -22.80352 -22.02075 -20.80502 -20.38944 -18.98858 -18.28120 -18.02986 -17.85260 -17.04205 -16.93841 -16.69569 -16.60593 -16.13006 -15.60780 -15.37890 -15.03976 -14.74628 -14.69277 -14.33279 -13.99623 -13.88153 -13.61780 -13.52738 -13.39164 -13.23723 -13.16200 -12.91952 -12.83635 -12.75299 -12.49454 -12.10458 -12.04904 -11.97578 -11.81608 -11.69574 -11.54311 -11.04217 -10.72333 -10.48613 -9.91710 -9.60229 -9.08956 -8.87251 -7.86957 -5.20508 -0.01475 0.39095 1.32348 1.42263 1.43494 1.52208 1.79253 1.88698 2.41808 2.46888 2.77927 3.31216 3.52305 3.58288 3.62605 3.71168 3.91507 4.03457 4.06230 4.12618 4.20718 4.22014 4.42073 4.46017 4.57925 4.61646 4.64793 4.68724 4.70813 4.85823 4.87907 4.93281 5.00729 5.02937 5.10160 5.26335 5.34845 5.37635 5.41231 5.47795 5.52941 5.65736 5.69819 5.72683 5.80624 6.19108 6.20075 6.74316 7.10992 7.43686 7.76532 8.40995 9.22716 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011302 B = 0.004152 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.838840 B = 6741.924180 C = 8631.713127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.169 3.831 3 N -0.700 5.700 4 C 0.512 3.488 5 O -0.570 6.570 6 C -0.061 4.061 7 C -0.178 4.178 8 C 0.024 3.976 9 O -0.201 6.201 10 C 0.024 3.976 11 C -0.112 4.112 12 C -0.094 4.094 13 C -0.140 4.140 14 C -0.095 4.095 15 C -0.138 4.138 16 C -0.128 4.128 17 C 0.186 3.814 18 N -0.620 5.620 19 C -0.242 4.242 20 H 0.065 0.935 21 C -0.056 4.056 22 N -0.944 5.944 23 Si 0.971 3.029 24 H -0.286 1.286 25 H -0.288 1.288 26 H -0.276 1.276 27 C 0.130 3.870 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.409 0.591 32 H 0.103 0.897 33 H 0.146 0.854 34 H 0.247 0.753 35 H 0.156 0.844 36 H 0.169 0.831 37 H 0.143 0.857 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.020 0.980 42 H 0.006 0.994 43 H 0.248 0.752 44 H 0.024 0.976 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.859 17.109 1.669 19.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.081 3.919 3 N -0.352 5.352 4 C 0.300 3.700 5 O -0.449 6.449 6 C -0.101 4.101 7 C -0.180 4.180 8 C -0.040 4.040 9 O -0.103 6.103 10 C -0.023 4.023 11 C -0.130 4.130 12 C -0.112 4.112 13 C -0.158 4.158 14 C -0.114 4.114 15 C -0.139 4.139 16 C -0.166 4.166 17 C 0.061 3.939 18 N -0.346 5.346 19 C -0.371 4.371 20 H 0.083 0.917 21 C -0.249 4.249 22 N -0.593 5.593 23 Si 0.799 3.201 24 H -0.213 1.213 25 H -0.214 1.214 26 H -0.201 1.201 27 C 0.004 3.996 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.245 0.755 32 H 0.121 0.879 33 H 0.164 0.836 34 H 0.263 0.737 35 H 0.174 0.826 36 H 0.186 0.814 37 H 0.161 0.839 38 H 0.128 0.872 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.038 0.962 42 H 0.025 0.975 43 H 0.057 0.943 44 H 0.043 0.957 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -10.355 16.943 2.389 20.000 hybrid contribution 1.575 -0.914 0.183 1.830 sum -8.780 16.029 2.572 18.457 Atomic orbital electron populations 1.21907 0.92108 1.02787 1.02955 1.21283 0.93992 0.81374 0.95226 1.45781 1.51779 1.11385 1.26215 1.20980 0.80095 0.87991 0.80945 1.90652 1.39213 1.78413 1.36671 1.20007 1.02525 0.90570 0.96990 1.20681 0.99405 1.03949 0.93977 1.24405 0.97980 0.96437 0.85173 1.83970 1.44876 1.61581 1.19870 1.19996 0.89620 0.98658 0.94054 1.20335 0.99620 1.03407 0.89632 1.21311 0.93130 0.95436 1.01311 1.21101 1.01486 1.00049 0.93192 1.20454 0.95897 0.98596 0.96414 1.20094 0.98155 1.01047 0.94593 1.23116 0.96708 0.99995 0.96811 1.20965 0.93030 0.97367 0.82559 1.44681 1.08414 1.78837 1.02698 1.19272 0.90720 1.37967 0.89147 0.91746 1.25476 0.99794 1.02180 0.97461 1.70134 1.24275 1.54468 1.10396 0.85197 0.78928 0.77892 0.78039 1.21344 1.21387 1.20122 1.21951 0.86296 0.94829 0.96523 0.90212 0.91283 0.92496 0.75476 0.87915 0.83628 0.73686 0.82598 0.81374 0.83923 0.87246 0.89389 0.88130 0.96165 0.97546 0.94275 0.95727 0.96468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 8.57 71.98 0.62 -3.35 16 2 C 0.17 5.72 0.82 5.00 0.00 5.73 16 3 N -0.70 -21.06 5.18 -416.65 -2.16 -23.22 16 4 C 0.51 16.04 7.20 87.66 0.63 16.67 16 5 O -0.57 -22.53 12.84 -3.04 -0.04 -22.57 16 6 C -0.06 -1.42 6.25 29.10 0.18 -1.24 16 7 C -0.18 -4.76 4.85 -18.59 -0.09 -4.85 16 8 C 0.02 0.54 11.89 66.85 0.79 1.33 16 9 O -0.20 -5.28 10.58 -8.90 -0.09 -5.38 16 10 C 0.02 0.67 7.42 22.99 0.17 0.84 16 11 C -0.11 -2.55 10.07 22.35 0.23 -2.32 16 12 C -0.09 -1.97 10.01 22.30 0.22 -1.75 16 13 C -0.14 -3.58 9.98 22.04 0.22 -3.36 16 14 C -0.10 -2.98 10.05 22.20 0.22 -2.76 16 15 C -0.14 -4.29 6.38 -20.21 -0.13 -4.42 16 16 C -0.13 -4.25 5.99 31.82 0.19 -4.06 16 17 C 0.19 8.81 5.37 86.77 0.47 9.27 16 18 N -0.62 -32.66 3.39 -691.80 -2.35 -35.01 16 19 C -0.24 -14.13 10.28 84.04 0.86 -13.27 16 20 H 0.06 3.78 7.83 -2.91 -0.02 3.76 16 21 C -0.06 -3.20 5.49 84.86 0.47 -2.73 16 22 N -0.94 -55.94 10.31 21.65 0.22 -55.72 16 23 Si 0.97 46.60 29.55 68.60 2.03 48.63 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 27 C 0.13 5.91 6.13 86.86 0.53 6.44 16 28 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.07 1.86 8.13 -2.39 -0.02 1.84 16 30 H 0.06 1.86 6.23 -2.39 -0.01 1.85 16 31 H 0.41 10.32 8.50 -92.71 -0.79 9.53 16 32 H 0.10 2.40 8.14 -2.38 -0.02 2.38 16 33 H 0.15 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.25 2.87 8.06 -2.91 -0.02 2.85 16 35 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 36 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 37 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 38 H 0.11 3.64 8.06 -2.91 -0.02 3.61 16 39 H 0.09 2.69 8.04 -2.39 -0.02 2.67 16 40 H 0.10 2.65 8.07 -2.39 -0.02 2.63 16 41 H 0.02 1.05 7.38 -2.39 -0.02 1.03 16 42 H 0.01 0.34 7.51 -2.39 -0.02 0.32 16 43 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 44 H 0.02 1.24 6.58 -2.39 -0.02 1.22 16 45 H 0.02 0.80 8.03 -2.39 -0.02 0.78 16 Total: -1.00 -78.92 369.24 3.42 -75.49 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.22 Total: 21.59 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 5.59 Total: -3.82 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -4.28 Total: -113.95 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.13 Total: -27.95 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -78.92 3.42 -75.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754681347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.952 kcal (2) G-P(sol) polarization free energy of solvation -78.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds