Wall clock time and date at job start Tue Mar 31 2020 15:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 110.78061 * 2 1 4 4 C 1.34777 * 120.00030 * 303.23840 * 3 2 1 5 5 O 1.21279 * 120.00150 * 359.97438 * 4 3 2 6 6 C 1.50705 * 120.00278 * 180.02562 * 4 3 2 7 7 C 1.50700 * 109.47343 * 180.02562 * 6 4 3 8 8 C 1.33991 * 126.90352 * 265.02488 * 7 6 4 9 9 O 1.34450 * 110.15232 * 179.97438 * 8 7 6 10 10 C 1.34805 * 110.89085 * 0.02562 * 9 8 7 11 11 C 1.38945 * 133.49786 * 180.02562 * 10 9 8 12 12 C 1.37849 * 119.81475 * 179.33624 * 11 10 9 13 13 C 1.38743 * 120.68862 * 0.55467 * 12 11 10 14 14 C 1.36736 * 120.41576 * 359.64206 * 13 12 11 15 15 C 1.39405 * 119.71670 * 0.02562 * 14 13 12 16 16 C 1.55151 * 110.71741 * 123.23736 * 2 1 3 17 17 C 1.54914 * 101.58023 * 153.86287 * 16 2 1 18 18 N 1.47420 * 104.83159 * 322.99181 * 17 16 2 19 19 C 1.36945 * 125.64792 * 204.08975 * 18 17 16 20 20 H 1.07997 * 119.99756 * 180.02562 * 19 18 17 21 21 C 1.38805 * 119.99878 * 0.02562 * 19 18 17 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.47020 * 108.70626 * 24.35323 * 18 17 16 28 28 H 1.08995 * 109.47166 * 296.76593 * 1 2 3 29 29 H 1.09000 * 109.47069 * 56.76058 * 1 2 3 30 30 H 1.08991 * 109.47197 * 176.76236 * 1 2 3 31 31 H 0.97000 * 120.00525 * 123.23771 * 3 2 1 32 32 H 1.09004 * 109.46599 * 300.00371 * 6 4 3 33 33 H 1.08998 * 109.46874 * 60.00016 * 6 4 3 34 34 H 1.07999 * 124.92880 * 359.97438 * 8 7 6 35 35 H 1.07994 * 120.08600 * 359.97438 * 11 10 9 36 36 H 1.08004 * 119.65361 * 180.17297 * 12 11 10 37 37 H 1.07999 * 119.79287 * 179.62202 * 13 12 11 38 38 H 1.08004 * 120.14348 * 180.02562 * 14 13 12 39 39 H 1.09002 * 111.00697 * 35.79181 * 16 2 1 40 40 H 1.08994 * 111.00548 * 271.93648 * 16 2 1 41 41 H 1.08999 * 110.37083 * 204.15142 * 17 16 2 42 42 H 1.08998 * 110.45606 * 81.87777 * 17 16 2 43 43 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.88406 * 118.12749 * 27 18 17 45 45 H 1.09001 * 109.88743 * 239.29401 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0498 1.3697 0.0000 4 6 1.6908 2.2267 -0.9762 5 8 0.9377 1.8639 -1.8550 6 6 2.2259 3.6355 -0.9766 7 6 1.6754 4.3817 -2.1646 8 6 2.2627 4.5390 -3.3586 9 8 1.4734 5.2632 -4.1712 10 6 0.3322 5.6141 -3.5454 11 6 -0.7853 6.3436 -3.9322 12 6 -1.8256 6.5252 -3.0462 13 6 -1.7651 5.9962 -1.7650 14 6 -0.6727 5.2786 -1.3632 15 6 0.3862 5.0787 -2.2476 16 6 2.0789 -0.7954 1.2138 17 6 3.4633 -1.2498 0.6875 18 7 3.2445 -1.5508 -0.7390 19 6 4.0043 -2.3970 -1.5018 20 1 3.7611 -2.5508 -2.5427 21 6 5.0869 -3.0571 -0.9371 22 7 5.3829 -2.8701 0.3317 23 14 6.1229 -4.2120 -1.9774 24 1 7.2104 -4.7866 -1.1454 25 1 5.2682 -5.3076 -2.5012 26 1 6.7141 -3.4595 -3.1129 27 6 2.0793 -0.7870 -1.2087 28 1 -0.3633 0.4628 0.9175 29 1 -0.3633 0.5633 -0.8595 30 1 -0.3633 -1.0259 -0.0580 31 1 2.6524 1.6598 0.7026 32 1 1.9226 4.1396 -0.0589 33 1 3.3140 3.6108 -1.0350 34 1 3.2298 4.1416 -3.6292 35 1 -0.8431 6.7585 -4.9276 36 1 -2.6942 7.0903 -3.3505 37 1 -2.5858 6.1524 -1.0806 38 1 -0.6304 4.8684 -0.3650 39 1 1.4451 -1.6535 1.4375 40 1 2.1850 -0.1518 2.0870 41 1 3.7960 -2.1427 1.2169 42 1 4.1946 -0.4492 0.7985 43 1 6.1393 -3.3317 0.7264 44 1 2.3814 -0.0970 -1.9965 45 1 1.3155 -1.4687 -1.5830 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754681348.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:44 Heat of formation + Delta-G solvation = 24.115903 kcal Electronic energy + Delta-G solvation = -27852.601629 eV Core-core repulsion = 24030.387080 eV Total energy + Delta-G solvation = -3822.214549 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.52554 -39.83747 -37.95722 -37.35958 -34.07913 -33.83666 -31.94549 -30.73087 -30.23451 -29.69660 -28.68474 -27.68535 -25.66508 -23.67366 -23.41225 -22.40542 -21.48965 -20.35818 -19.78447 -18.97980 -17.45638 -17.28366 -16.95715 -16.64858 -15.96892 -15.88576 -15.48691 -14.97502 -14.67768 -14.26332 -13.94674 -13.76463 -13.71986 -13.25557 -13.14529 -12.79527 -12.65566 -12.39417 -12.33768 -12.18388 -11.96890 -11.70413 -11.60972 -11.54815 -10.99717 -10.93889 -10.84367 -10.40671 -10.32744 -10.14210 -10.11125 -9.90689 -9.64860 -9.20374 -8.73321 -8.65687 -8.58628 -8.22584 -6.81363 -5.65335 -3.05732 0.82241 1.25673 2.22200 2.73425 2.94335 3.41064 3.45063 3.46485 3.49584 3.68140 4.35586 4.44776 4.49868 4.75606 4.82271 4.91092 5.03684 5.19215 5.26200 5.29714 5.34461 5.39980 5.41194 5.50945 5.52953 5.58870 5.74694 5.79875 6.06546 6.11403 6.15103 6.18680 6.23681 6.30875 6.32711 6.38386 6.47379 6.52119 6.54092 6.72772 6.83649 7.08130 7.16512 7.44571 7.63173 7.80892 7.90282 8.35492 8.58269 9.23272 9.83966 10.48909 11.38903 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019805 B = 0.002856 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.426433 B = 9802.282863 C =10585.953029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.160 3.840 3 N -0.710 5.710 4 C 0.513 3.487 5 O -0.528 6.528 6 C -0.071 4.071 7 C -0.154 4.154 8 C 0.021 3.979 9 O -0.193 6.193 10 C 0.050 3.950 11 C -0.108 4.108 12 C -0.099 4.099 13 C -0.138 4.138 14 C -0.067 4.067 15 C -0.110 4.110 16 C -0.146 4.146 17 C 0.153 3.847 18 N -0.604 5.604 19 C -0.218 4.218 20 H 0.076 0.924 21 C -0.013 4.013 22 N -0.925 5.925 23 Si 0.914 3.086 24 H -0.290 1.290 25 H -0.285 1.285 26 H -0.286 1.286 27 C 0.138 3.862 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.397 0.603 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.208 0.792 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.107 0.893 42 H 0.010 0.990 43 H 0.252 0.748 44 H 0.030 0.970 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.794 19.314 0.192 22.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.074 3.926 3 N -0.361 5.361 4 C 0.299 3.701 5 O -0.404 6.404 6 C -0.111 4.111 7 C -0.156 4.156 8 C -0.044 4.044 9 O -0.094 6.094 10 C 0.002 3.998 11 C -0.126 4.126 12 C -0.117 4.117 13 C -0.156 4.156 14 C -0.085 4.085 15 C -0.111 4.111 16 C -0.185 4.185 17 C 0.028 3.972 18 N -0.330 5.330 19 C -0.347 4.347 20 H 0.094 0.906 21 C -0.208 4.208 22 N -0.574 5.574 23 Si 0.745 3.255 24 H -0.216 1.216 25 H -0.212 1.212 26 H -0.213 1.213 27 C 0.012 3.988 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.231 0.769 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.224 0.776 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.125 0.875 42 H 0.028 0.972 43 H 0.062 0.938 44 H 0.047 0.953 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -11.097 18.963 -0.703 21.983 hybrid contribution 1.016 -0.576 -0.063 1.169 sum -10.082 18.387 -0.767 20.984 Atomic orbital electron populations 1.22058 0.94269 1.02356 1.02296 1.21328 0.92991 0.80484 0.97763 1.45990 1.49602 1.12139 1.28351 1.20365 0.81378 0.86643 0.81756 1.90676 1.35535 1.78060 1.36178 1.20005 1.01878 0.92454 0.96795 1.20396 0.94607 1.04010 0.96597 1.23750 0.96638 0.95583 0.88448 1.84004 1.25743 1.59269 1.40383 1.19614 0.88305 1.00430 0.91419 1.19911 0.90774 1.00967 1.00990 1.20882 0.97592 0.99837 0.93375 1.20740 0.98457 0.99775 0.96663 1.20257 0.91959 0.97307 0.98958 1.19727 0.95653 1.00899 0.94789 1.23350 1.01224 0.98841 0.95128 1.21926 0.89360 1.00609 0.85290 1.44505 1.30987 1.50126 1.07391 1.19050 1.06083 1.16575 0.92943 0.90645 1.24756 0.98787 1.00750 0.96466 1.69768 1.30221 1.46546 1.10907 0.86149 0.79739 0.80655 0.78965 1.21587 1.21164 1.21289 1.21591 0.90263 0.93062 0.93900 0.93318 0.90533 0.91933 0.76890 0.88130 0.87721 0.77572 0.85236 0.85002 0.85532 0.85873 0.90621 0.91917 0.87494 0.97205 0.93759 0.95251 0.95353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 8.44 37.16 0.31 -2.12 16 2 C 0.16 2.85 0.81 -129.98 -0.11 2.74 16 3 N -0.71 -10.75 5.14 -45.91 -0.24 -10.99 16 4 C 0.51 7.86 7.03 -10.98 -0.08 7.79 16 5 O -0.53 -10.10 13.01 5.56 0.07 -10.03 16 6 C -0.07 -0.81 6.25 -29.03 -0.18 -0.99 16 7 C -0.15 -1.99 4.85 -102.66 -0.50 -2.49 16 8 C 0.02 0.26 11.89 29.24 0.35 0.60 16 9 O -0.19 -2.61 10.58 3.91 0.04 -2.57 16 10 C 0.05 0.66 7.42 -38.47 -0.29 0.37 16 11 C -0.11 -1.15 10.07 -39.46 -0.40 -1.55 16 12 C -0.10 -0.90 10.01 -39.54 -0.40 -1.30 16 13 C -0.14 -1.33 9.98 -39.94 -0.40 -1.73 16 14 C -0.07 -0.77 10.05 -39.69 -0.40 -1.17 16 15 C -0.11 -1.47 6.38 -105.16 -0.67 -2.14 16 16 C -0.15 -2.63 6.07 -24.58 -0.15 -2.78 16 17 C 0.15 3.58 5.87 -2.53 -0.01 3.57 16 18 N -0.60 -15.60 3.39 -170.07 -0.58 -16.18 16 19 C -0.22 -6.18 10.27 -15.06 -0.15 -6.33 16 20 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 21 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 22 N -0.93 -26.68 10.09 55.49 0.56 -26.12 16 23 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 27 C 0.14 3.10 6.19 -3.06 -0.02 3.08 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 1.35 5.97 -51.93 -0.31 1.04 16 30 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 31 H 0.40 5.05 8.49 -40.82 -0.35 4.71 16 32 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.21 1.89 8.06 -52.49 -0.42 1.47 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 39 H 0.08 1.35 8.05 -51.93 -0.42 0.94 16 40 H 0.06 0.94 8.07 -51.93 -0.42 0.52 16 41 H 0.11 2.84 5.87 -51.93 -0.30 2.54 16 42 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.03 0.71 6.90 -51.93 -0.36 0.35 16 45 H 0.03 0.66 7.77 -51.93 -0.40 0.25 16 LS Contribution 368.34 15.07 5.55 5.55 Total: -1.00 -34.26 368.34 -9.12 -43.38 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.33 Total: 4.63 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -3.18 Total: -4.90 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.25 Total: -53.28 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.11 Total: -12.60 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.26 -9.12 -43.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754681348.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.496 kcal (2) G-P(sol) polarization free energy of solvation -34.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds