Wall clock time and date at job start Tue Mar 31 2020 16:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47148 * 2 1 4 4 C 1.52997 * 109.47323 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47059 * 179.97438 * 4 3 2 6 6 C 1.34783 * 119.99694 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00007 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99786 * 179.97438 * 6 5 4 9 9 C 1.53346 * 109.42092 * 300.13361 * 8 6 5 10 10 C 1.53195 * 109.14901 * 178.67337 * 9 8 6 11 11 N 1.46919 * 108.89273 * 54.57640 * 10 9 8 12 12 C 1.34778 * 120.63255 * 126.34238 * 11 10 9 13 13 O 1.21279 * 120.00169 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00023 * 179.97438 * 12 11 10 15 15 S 1.81004 * 109.47124 * 179.97438 * 14 12 11 16 16 C 1.76202 * 100.00170 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99808 * 0.02562 * 16 15 14 18 18 C 1.38802 * 119.99850 * 179.97438 * 16 15 14 19 19 N 1.31629 * 120.00032 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99655 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47281 * 89.99944 * 20 18 16 22 22 H 1.48503 * 109.47201 * 209.99866 * 20 18 16 23 23 H 1.48500 * 109.47189 * 329.99935 * 20 18 16 24 24 C 1.46933 * 118.74003 * 306.32349 * 11 10 9 25 25 C 1.53034 * 109.45870 * 180.02562 * 8 6 5 26 26 H 1.09000 * 109.46596 * 60.00812 * 1 2 3 27 27 H 1.09002 * 109.46653 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47495 * 300.00622 * 1 2 3 29 29 H 1.08997 * 109.47495 * 239.99378 * 2 1 3 30 30 H 1.09000 * 109.47035 * 119.98882 * 2 1 3 31 31 H 1.08997 * 109.47430 * 59.99338 * 3 2 1 32 32 H 1.09010 * 109.46793 * 299.99247 * 3 2 1 33 33 H 1.09006 * 109.47202 * 59.99469 * 4 3 2 34 34 H 1.08997 * 109.47044 * 299.99841 * 4 3 2 35 35 H 0.96996 * 120.00433 * 0.02562 * 5 4 3 36 36 H 1.09001 * 109.45756 * 60.03478 * 8 6 5 37 37 H 1.08997 * 109.68637 * 58.70546 * 9 8 6 38 38 H 1.09002 * 109.47277 * 298.50802 * 9 8 6 39 39 H 1.09002 * 109.58720 * 294.71670 * 10 9 8 40 40 H 1.08996 * 109.58651 * 174.43567 * 10 9 8 41 41 H 1.09001 * 109.47488 * 299.99559 * 14 12 11 42 42 H 1.09001 * 109.47269 * 59.99982 * 14 12 11 43 43 H 0.96996 * 119.99581 * 180.02562 * 19 18 16 44 44 H 1.08994 * 109.58580 * 173.39910 * 24 11 10 45 45 H 1.09006 * 109.57831 * 293.67403 * 24 11 10 46 46 H 1.08994 * 109.50232 * 61.43820 * 25 8 6 47 47 H 1.09007 * 109.52628 * 301.35481 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 5.3834 3.0701 0.0010 7 8 6.1715 2.1482 0.0018 8 6 5.8857 4.4909 -0.0003 9 6 5.3723 5.2121 -1.2523 10 6 5.8588 6.6646 -1.2306 11 7 7.3206 6.6745 -1.0832 12 6 8.0943 7.3488 -1.9569 13 8 7.5851 7.9546 -2.8758 14 6 9.5922 7.3498 -1.7919 15 16 10.3439 8.3347 -3.1115 16 6 12.0456 8.1693 -2.6853 17 1 12.3320 7.5860 -1.8227 18 6 13.0180 8.7878 -3.4589 19 7 12.6689 9.4982 -4.5106 20 14 14.8221 8.6118 -3.0075 21 1 15.3894 7.4213 -3.6903 22 1 15.5604 9.8269 -3.4362 23 1 14.9507 8.4474 -1.5373 24 6 7.9230 5.9358 0.0349 25 6 7.4160 4.4906 0.0005 26 1 -0.3632 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9289 0.8909 35 1 3.4280 3.5611 -0.0003 36 1 5.5219 5.0054 0.8892 37 1 4.2826 5.1936 -1.2659 38 1 5.7562 4.7132 -2.1422 39 1 5.4033 7.1901 -0.3912 40 1 5.5822 7.1566 -2.1631 41 1 9.8510 7.7803 -0.8245 42 1 9.9644 6.3267 -1.8456 43 1 13.3485 9.9301 -5.0514 44 1 9.0084 5.9448 -0.0637 45 1 7.6379 6.4034 0.9774 46 1 7.7803 3.9984 -0.9012 47 1 7.7798 3.9569 0.8786 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042747369.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:30 Heat of formation + Delta-G solvation = -99.082338 kcal Electronic energy + Delta-G solvation = -25196.900479 eV Core-core repulsion = 21504.787605 eV Total energy + Delta-G solvation = -3692.112874 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.60462 -39.42585 -37.10116 -36.46158 -34.18485 -33.07044 -32.41305 -31.47134 -29.66131 -28.83681 -26.07408 -25.43314 -23.90157 -23.20804 -21.88430 -21.68480 -20.28263 -19.08109 -17.77655 -17.44984 -16.57700 -16.39058 -16.24271 -15.62634 -15.37425 -15.19993 -14.78826 -14.44952 -14.23951 -14.15504 -14.03226 -13.81675 -13.60602 -13.11771 -12.92233 -12.85503 -12.68774 -12.36783 -12.14684 -12.00911 -11.79545 -11.68225 -11.65918 -11.43433 -11.17797 -11.04910 -11.01863 -10.98693 -10.86398 -10.73459 -9.98348 -9.78794 -9.43425 -9.35360 -9.05075 -8.55108 -8.21165 -6.48589 -6.20145 -3.90637 2.36780 2.79279 2.94245 3.06499 3.23946 3.27567 3.31794 3.60785 4.21673 4.26556 4.29396 4.37870 4.42644 4.47230 4.56554 4.83564 4.85435 4.92901 4.97763 5.01909 5.10795 5.12103 5.15119 5.24859 5.25280 5.33753 5.39548 5.44818 5.49100 5.55764 5.58209 5.63436 5.69877 5.71051 5.77300 5.83750 5.90402 5.92074 6.04454 6.13200 6.14964 6.62767 7.13383 7.54231 7.61391 7.92877 8.36838 8.55765 9.25274 10.87301 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028340 B = 0.001930 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.769641 B =14500.991257 C =14967.031050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.132 4.132 4 C 0.117 3.883 5 N -0.734 5.734 6 C 0.518 3.482 7 O -0.536 6.536 8 C -0.106 4.106 9 C -0.124 4.124 10 C 0.115 3.885 11 N -0.621 5.621 12 C 0.536 3.464 13 O -0.517 6.517 14 C -0.151 4.151 15 S -0.062 6.062 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.108 3.892 25 C -0.115 4.115 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.400 0.600 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.094 0.906 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.450 -15.283 13.483 31.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.170 4.170 4 C -0.007 4.007 5 N -0.387 5.387 6 C 0.304 3.696 7 O -0.412 6.412 8 C -0.127 4.127 9 C -0.163 4.163 10 C -0.008 4.008 11 N -0.358 5.358 12 C 0.324 3.676 13 O -0.392 6.392 14 C -0.302 4.302 15 S 0.165 5.835 16 C -0.683 4.683 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.015 4.015 25 C -0.154 4.154 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.235 0.765 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.115 0.885 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.112 0.888 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -23.561 -14.941 11.957 30.353 hybrid contribution 1.368 -0.584 1.439 2.070 sum -22.192 -15.526 13.396 30.216 Atomic orbital electron populations 1.21766 0.95435 1.01883 1.01923 1.21437 0.96167 0.95846 1.02594 1.21837 0.94095 0.98199 1.02851 1.21377 0.93724 0.83094 1.02467 1.46048 1.07323 1.08844 1.76441 1.20743 0.81950 0.91606 0.75268 1.90717 1.55279 1.46474 1.48723 1.21408 0.98136 0.92486 1.00663 1.21989 1.00556 0.96452 0.97277 1.21465 0.80460 0.95325 1.03580 1.48122 1.06257 1.52263 1.29150 1.20341 0.88859 0.77555 0.80813 1.90686 1.74885 1.42343 1.31259 1.23562 0.93697 1.05960 1.06976 1.85386 1.02527 1.63593 1.31993 1.22866 0.91366 1.37811 1.16279 0.90918 1.24986 0.99549 0.94483 0.94523 1.70018 1.34174 1.30666 1.15440 0.86172 0.82713 0.77846 0.78797 1.20271 1.20761 1.19684 1.21758 0.99598 0.90826 0.89346 1.21756 0.92579 0.96622 1.04415 0.92613 0.92545 0.92680 0.91585 0.91655 0.91266 0.91167 0.91493 0.91552 0.76547 0.88267 0.90528 0.90667 0.91613 0.88466 0.89212 0.89174 0.92204 0.88752 0.91327 0.90422 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.91 37.16 0.37 -0.22 16 2 C -0.12 -0.52 5.93 -26.73 -0.16 -0.68 16 3 C -0.13 -0.56 5.33 -26.73 -0.14 -0.70 16 4 C 0.12 0.78 5.67 -4.04 -0.02 0.76 16 5 N -0.73 -5.04 5.44 -60.29 -0.33 -5.36 16 6 C 0.52 5.16 7.16 -10.98 -0.08 5.08 16 7 O -0.54 -7.62 15.98 5.56 0.09 -7.53 16 8 C -0.11 -0.89 2.49 -91.57 -0.23 -1.12 16 9 C -0.12 -1.06 5.29 -26.45 -0.14 -1.20 16 10 C 0.11 1.25 6.42 -3.71 -0.02 1.23 16 11 N -0.62 -8.57 2.97 -172.77 -0.51 -9.08 16 12 C 0.54 10.17 7.72 -10.99 -0.08 10.08 16 13 O -0.52 -11.75 15.27 5.56 0.08 -11.66 16 14 C -0.15 -3.10 4.50 36.00 0.16 -2.94 16 15 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 16 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 17 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 18 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.28 13.22 55.49 0.73 -25.54 16 20 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 C 0.11 1.17 6.34 -3.71 -0.02 1.15 16 25 C -0.12 -1.18 4.65 -26.62 -0.12 -1.31 16 26 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.28 8.14 -51.92 -0.42 -0.14 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.40 1.66 7.88 -40.82 -0.32 1.34 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.43 7.54 -51.93 -0.39 0.04 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.10 1.25 7.00 -51.93 -0.36 0.89 16 41 H 0.09 1.69 7.94 -51.92 -0.41 1.28 16 42 H 0.09 1.73 7.69 -51.91 -0.40 1.33 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.09 1.08 5.93 -51.93 -0.31 0.77 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.08 0.97 8.13 -51.93 -0.42 0.55 16 47 H 0.08 0.81 8.07 -51.92 -0.42 0.39 16 LS Contribution 392.90 15.07 5.92 5.92 Total: -1.00 -36.54 392.90 -9.62 -46.16 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -8.08 Total: -2.64 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -0.30 Total: -2.87 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: -0.11 Total: -39.99 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: 0.17 Total: -19.20 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.54 -9.62 -46.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042747369.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.920 kcal (2) G-P(sol) polarization free energy of solvation -36.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds