Wall clock time and date at job start Tue Mar 31 2020 15:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46826 * 2 1 4 4 C 1.50693 * 109.46987 * 119.99850 * 2 1 3 5 5 C 1.38146 * 126.31969 * 298.01477 * 4 2 1 6 6 C 1.47263 * 126.42268 * 0.04208 * 5 4 2 7 7 O 1.21529 * 119.99849 * 5.93772 * 6 5 4 8 8 O 1.34757 * 120.00289 * 185.94350 * 6 5 4 9 9 C 1.45197 * 117.00160 * 179.97438 * 8 6 5 10 10 C 1.53007 * 109.47109 * 179.97438 * 9 8 6 11 11 C 1.50698 * 109.47007 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00193 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99744 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99890 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99929 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46803 * 90.00229 * 15 13 11 17 17 H 1.48500 * 109.47317 * 210.00324 * 15 13 11 18 18 H 1.48507 * 109.47111 * 330.00493 * 15 13 11 19 19 C 1.41387 * 107.15548 * 180.29225 * 5 4 2 20 20 N 1.30462 * 108.05755 * 359.74810 * 19 5 4 21 21 N 1.34507 * 126.31088 * 117.87319 * 4 2 1 22 22 C 1.40153 * 125.76103 * 359.96323 * 21 4 2 23 23 C 1.38846 * 120.06302 * 136.55723 * 22 21 4 24 24 C 1.38122 * 119.92981 * 179.97438 * 23 22 21 25 25 C 1.38285 * 120.06887 * 359.97438 * 24 23 22 26 26 C 1.38285 * 120.13352 * 0.02562 * 25 24 23 27 27 C 1.38123 * 120.06728 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.47277 * 291.22848 * 1 2 3 29 29 H 1.08996 * 109.47278 * 51.22659 * 1 2 3 30 30 H 1.09003 * 109.47106 * 171.22588 * 1 2 3 31 31 H 1.08999 * 109.46966 * 240.00510 * 2 1 3 32 32 H 1.09001 * 109.46758 * 188.51560 * 3 2 1 33 33 H 1.08995 * 109.47489 * 308.52255 * 3 2 1 34 34 H 1.09006 * 109.46878 * 68.52299 * 3 2 1 35 35 H 1.09000 * 109.46960 * 299.99523 * 9 8 6 36 36 H 1.09002 * 109.47240 * 59.99773 * 9 8 6 37 37 H 1.08997 * 109.46920 * 300.00277 * 10 9 8 38 38 H 1.09002 * 109.46946 * 59.99972 * 10 9 8 39 39 H 0.97002 * 119.99608 * 179.97438 * 14 13 11 40 40 H 1.07994 * 125.97434 * 179.76836 * 19 5 4 41 41 H 1.08000 * 120.04076 * 0.02562 * 23 22 21 42 42 H 1.07996 * 119.96937 * 180.02562 * 24 23 22 43 43 H 1.07995 * 119.93322 * 179.74256 * 25 24 23 44 44 H 1.07995 * 119.96593 * 179.97438 * 26 25 24 45 45 H 1.07994 * 120.03284 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2304 5 6 1.8121 -0.3322 2.5407 6 6 1.0430 0.8384 2.9955 7 8 0.4390 1.5189 2.1898 8 8 1.0090 1.1552 4.3048 9 6 0.2314 2.3224 4.6807 10 6 0.3106 2.5216 6.1957 11 6 -0.4959 3.7334 6.5858 12 1 -1.0135 4.3041 5.8289 13 6 -0.5738 4.1129 7.9090 14 7 0.0561 3.4176 8.8307 15 14 -1.5729 5.6154 8.3925 16 1 -2.9704 5.2073 8.6851 17 1 -0.9760 6.2390 9.6008 18 1 -1.5666 6.5943 7.2758 19 6 2.4685 -1.2764 3.3633 20 7 3.0364 -2.1606 2.5902 21 7 2.7755 -1.8311 1.2555 22 6 3.2189 -2.5452 0.1339 23 6 4.5230 -3.0190 0.0819 24 6 4.9569 -3.7228 -1.0245 25 6 4.0938 -3.9561 -2.0795 26 6 2.7945 -3.4854 -2.0306 27 6 2.3547 -2.7809 -0.9269 28 1 -0.3634 0.3721 0.9579 29 1 -0.3633 0.6435 -0.8012 30 1 -0.3633 -1.0157 -0.1568 31 1 1.8933 -0.5138 -0.8900 32 1 3.1193 1.4463 -0.1522 33 1 1.5577 1.9985 -0.8039 34 1 1.8063 1.9105 0.9564 35 1 0.6307 3.2026 4.1768 36 1 -0.8082 2.1762 4.3877 37 1 -0.0888 1.6413 6.6993 38 1 1.3502 2.6676 6.4891 39 1 0.0016 3.6848 9.7616 40 1 2.4949 -1.2675 4.4429 41 1 5.1972 -2.8383 0.9061 42 1 5.9709 -4.0921 -1.0654 43 1 4.4366 -4.5030 -2.9453 44 1 2.1229 -3.6687 -2.8562 45 1 1.3398 -2.4139 -0.8891 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045002561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:31 Heat of formation + Delta-G solvation = 12.477264 kcal Electronic energy + Delta-G solvation = -27315.620568 eV Core-core repulsion = 23492.901329 eV Total energy + Delta-G solvation = -3822.719238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.09082 -39.75673 -39.15098 -36.48213 -35.18564 -33.81659 -33.29523 -31.51089 -30.46537 -29.77349 -29.36021 -27.19239 -25.40968 -24.21640 -23.54227 -22.59758 -22.04897 -21.09492 -20.64980 -19.22765 -18.14972 -17.05204 -16.77927 -16.18462 -15.98008 -15.87674 -15.74041 -15.29444 -14.60839 -14.50861 -14.43704 -14.31916 -13.87416 -13.55709 -13.50290 -13.27771 -12.86753 -12.80160 -12.34918 -12.14669 -11.95788 -11.83802 -11.68429 -11.29911 -11.16023 -11.07595 -11.03056 -10.84777 -10.64421 -10.59354 -10.28806 -9.90342 -9.56568 -9.55989 -9.48231 -9.27239 -9.16862 -8.61585 -8.42036 -6.08393 -4.12460 0.45257 0.82916 1.44062 1.97327 2.05014 3.16536 3.29767 3.31157 3.35733 3.37559 3.43540 4.11391 4.29766 4.40200 4.41585 4.56568 4.62482 4.63740 4.85688 4.99248 5.02879 5.08089 5.12414 5.17031 5.28253 5.40419 5.47687 5.66853 5.71767 5.77892 5.81574 5.83971 5.86023 5.91527 5.97293 6.13222 6.14130 6.24415 6.31614 6.38367 6.41531 6.67946 6.79740 7.11463 7.34482 7.59887 7.65915 7.89865 8.23897 8.35202 8.93201 9.51732 11.03098 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028104 B = 0.002341 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.053595 B =11957.808699 C =12641.842745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.034 4.034 3 C -0.154 4.154 4 C 0.173 3.827 5 C -0.268 4.268 6 C 0.535 3.465 7 O -0.511 6.511 8 O -0.351 6.351 9 C 0.078 3.922 10 C 0.024 3.976 11 C -0.525 4.525 12 H 0.059 0.941 13 C 0.060 3.940 14 N -0.890 5.890 15 Si 0.899 3.101 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.114 3.886 20 N -0.296 5.296 21 N -0.319 5.319 22 C 0.147 3.853 23 C -0.103 4.103 24 C -0.103 4.103 25 C -0.117 4.117 26 C -0.101 4.101 27 C -0.124 4.124 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.263 0.737 40 H 0.206 0.794 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.130 0.870 44 H 0.134 0.866 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.083 -14.811 -23.534 28.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.054 4.054 3 C -0.211 4.211 4 C 0.044 3.956 5 C -0.280 4.280 6 C 0.381 3.619 7 O -0.404 6.404 8 O -0.267 6.267 9 C 0.006 3.994 10 C -0.013 4.013 11 C -0.563 4.563 12 H 0.077 0.923 13 C -0.142 4.142 14 N -0.528 5.528 15 Si 0.726 3.274 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.197 1.197 19 C -0.075 4.075 20 N -0.112 5.112 21 N -0.092 5.092 22 C 0.056 3.944 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.135 4.135 26 C -0.120 4.120 27 C -0.144 4.144 28 H 0.117 0.883 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.222 0.778 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.686 -15.717 -23.601 29.656 hybrid contribution -0.997 1.492 0.508 1.865 sum 7.688 -14.225 -23.092 28.191 Atomic orbital electron populations 1.22107 0.92132 1.01104 1.05986 1.20037 0.97692 0.96493 0.91203 1.22049 0.99703 0.93881 1.05505 1.21735 0.90813 0.86474 0.96576 1.19196 1.14782 1.02460 0.91556 1.19801 0.77935 0.82578 0.81608 1.90649 1.43417 1.51931 1.54364 1.86570 1.67175 1.48504 1.24421 1.23634 0.93133 0.82618 1.00053 1.19170 0.98619 0.97669 0.85845 1.20977 1.31161 1.11266 0.92925 0.92261 1.24985 0.95669 0.97118 0.96432 1.69975 1.42327 1.39385 1.01133 0.86483 0.80120 0.82651 0.78114 1.20509 1.21094 1.19732 1.24420 0.92097 0.90060 1.00913 1.77389 1.25034 1.23914 0.84899 1.45573 1.39625 1.18933 1.05032 1.17445 0.93688 0.97817 0.85401 1.21102 0.93653 0.98298 0.99202 1.21111 1.00295 0.97906 0.92886 1.21313 0.93751 0.99622 0.98859 1.21046 0.96353 0.97083 0.97512 1.21209 0.99573 0.99865 0.93730 0.88345 0.91555 0.93673 0.90080 0.93500 0.91553 0.88954 0.92275 0.92269 0.95347 0.95348 0.92740 0.77762 0.84760 0.84884 0.85209 0.84798 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 8.90 37.16 0.33 -1.47 16 2 C -0.03 -0.39 2.31 -91.77 -0.21 -0.61 16 3 C -0.15 -1.87 8.89 37.16 0.33 -1.54 16 4 C 0.17 2.37 5.53 -81.46 -0.45 1.91 16 5 C -0.27 -4.14 5.91 -105.07 -0.62 -4.76 16 6 C 0.53 9.50 7.31 34.40 0.25 9.75 16 7 O -0.51 -9.29 10.13 -19.29 -0.20 -9.49 16 8 O -0.35 -7.00 10.07 -40.65 -0.41 -7.41 16 9 C 0.08 1.71 5.41 37.16 0.20 1.91 16 10 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 11 C -0.53 -14.69 9.11 -34.44 -0.31 -15.00 16 12 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 15 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 C 0.11 1.63 11.87 -16.94 -0.20 1.43 16 20 N -0.30 -4.27 12.34 30.88 0.38 -3.88 16 21 N -0.32 -4.22 3.66 -6.50 -0.02 -4.24 16 22 C 0.15 1.60 6.09 -83.60 -0.51 1.09 16 23 C -0.10 -0.97 9.85 -39.40 -0.39 -1.36 16 24 C -0.10 -0.70 10.04 -39.61 -0.40 -1.10 16 25 C -0.12 -0.69 10.04 -39.55 -0.40 -1.09 16 26 C -0.10 -0.66 10.04 -39.61 -0.40 -1.05 16 27 C -0.12 -1.08 7.99 -39.40 -0.31 -1.40 16 28 H 0.10 1.43 4.72 -51.93 -0.24 1.19 16 29 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 30 H 0.04 0.46 7.85 -51.93 -0.41 0.05 16 31 H 0.08 0.79 5.59 -51.93 -0.29 0.50 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 34 H 0.09 1.38 4.60 -51.93 -0.24 1.15 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.21 2.52 8.06 -52.49 -0.42 2.10 16 41 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 43 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 44 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 45 H 0.13 1.11 6.58 -52.49 -0.35 0.76 16 LS Contribution 372.95 15.07 5.62 5.62 Total: -1.00 -31.73 372.95 -8.38 -40.11 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -6.13 Total: -0.27 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -3.33 Total: -11.20 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 1.09 Total: -33.73 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.60 Total: -16.89 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.73 -8.38 -40.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045002561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.591 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds