Wall clock time and date at job start Tue Mar 31 2020 15:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46826 * 2 1 4 4 C 1.50693 * 109.46987 * 119.99850 * 2 1 3 5 5 C 1.38146 * 126.31969 * 298.01477 * 4 2 1 6 6 C 1.47263 * 126.42268 * 0.04208 * 5 4 2 7 7 O 1.21529 * 119.99849 * 5.93772 * 6 5 4 8 8 O 1.34757 * 120.00289 * 185.94350 * 6 5 4 9 9 C 1.45197 * 117.00160 * 179.97438 * 8 6 5 10 10 C 1.53007 * 109.47109 * 179.97438 * 9 8 6 11 11 C 1.50698 * 109.47007 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00193 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99744 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99890 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99929 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46803 * 90.00229 * 15 13 11 17 17 H 1.48500 * 109.47317 * 210.00324 * 15 13 11 18 18 H 1.48507 * 109.47111 * 330.00493 * 15 13 11 19 19 C 1.41387 * 107.15548 * 180.29225 * 5 4 2 20 20 N 1.30462 * 108.05755 * 359.74810 * 19 5 4 21 21 N 1.34507 * 126.31088 * 117.87319 * 4 2 1 22 22 C 1.40153 * 125.76103 * 359.96323 * 21 4 2 23 23 C 1.38846 * 120.06302 * 136.55723 * 22 21 4 24 24 C 1.38122 * 119.92981 * 179.97438 * 23 22 21 25 25 C 1.38285 * 120.06887 * 359.97438 * 24 23 22 26 26 C 1.38285 * 120.13352 * 0.02562 * 25 24 23 27 27 C 1.38123 * 120.06728 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.47277 * 291.22848 * 1 2 3 29 29 H 1.08996 * 109.47278 * 51.22659 * 1 2 3 30 30 H 1.09003 * 109.47106 * 171.22588 * 1 2 3 31 31 H 1.08999 * 109.46966 * 240.00510 * 2 1 3 32 32 H 1.09001 * 109.46758 * 188.51560 * 3 2 1 33 33 H 1.08995 * 109.47489 * 308.52255 * 3 2 1 34 34 H 1.09006 * 109.46878 * 68.52299 * 3 2 1 35 35 H 1.09000 * 109.46960 * 299.99523 * 9 8 6 36 36 H 1.09002 * 109.47240 * 59.99773 * 9 8 6 37 37 H 1.08997 * 109.46920 * 300.00277 * 10 9 8 38 38 H 1.09002 * 109.46946 * 59.99972 * 10 9 8 39 39 H 0.97002 * 119.99608 * 179.97438 * 14 13 11 40 40 H 1.07994 * 125.97434 * 179.76836 * 19 5 4 41 41 H 1.08000 * 120.04076 * 0.02562 * 23 22 21 42 42 H 1.07996 * 119.96937 * 180.02562 * 24 23 22 43 43 H 1.07995 * 119.93322 * 179.74256 * 25 24 23 44 44 H 1.07995 * 119.96593 * 179.97438 * 26 25 24 45 45 H 1.07994 * 120.03284 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2304 5 6 1.8121 -0.3322 2.5407 6 6 1.0430 0.8384 2.9955 7 8 0.4390 1.5189 2.1898 8 8 1.0090 1.1552 4.3048 9 6 0.2314 2.3224 4.6807 10 6 0.3106 2.5216 6.1957 11 6 -0.4959 3.7334 6.5858 12 1 -1.0135 4.3041 5.8289 13 6 -0.5738 4.1129 7.9090 14 7 0.0561 3.4176 8.8307 15 14 -1.5729 5.6154 8.3925 16 1 -2.9704 5.2073 8.6851 17 1 -0.9760 6.2390 9.6008 18 1 -1.5666 6.5943 7.2758 19 6 2.4685 -1.2764 3.3633 20 7 3.0364 -2.1606 2.5902 21 7 2.7755 -1.8311 1.2555 22 6 3.2189 -2.5452 0.1339 23 6 4.5230 -3.0190 0.0819 24 6 4.9569 -3.7228 -1.0245 25 6 4.0938 -3.9561 -2.0795 26 6 2.7945 -3.4854 -2.0306 27 6 2.3547 -2.7809 -0.9269 28 1 -0.3634 0.3721 0.9579 29 1 -0.3633 0.6435 -0.8012 30 1 -0.3633 -1.0157 -0.1568 31 1 1.8933 -0.5138 -0.8900 32 1 3.1193 1.4463 -0.1522 33 1 1.5577 1.9985 -0.8039 34 1 1.8063 1.9105 0.9564 35 1 0.6307 3.2026 4.1768 36 1 -0.8082 2.1762 4.3877 37 1 -0.0888 1.6413 6.6993 38 1 1.3502 2.6676 6.4891 39 1 0.0016 3.6848 9.7616 40 1 2.4949 -1.2675 4.4429 41 1 5.1972 -2.8383 0.9061 42 1 5.9709 -4.0921 -1.0654 43 1 4.4366 -4.5030 -2.9453 44 1 2.1229 -3.6687 -2.8562 45 1 1.3398 -2.4139 -0.8891 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045002561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:30 Heat of formation + Delta-G solvation = -3.310518 kcal Electronic energy + Delta-G solvation = -27316.305177 eV Core-core repulsion = 23492.901329 eV Total energy + Delta-G solvation = -3823.403848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.13412 -41.06720 -39.94193 -37.87223 -36.33202 -35.38909 -34.67380 -32.36480 -32.08485 -30.86375 -30.32469 -28.13465 -27.19849 -25.47351 -24.31325 -23.53089 -23.16305 -22.74299 -21.82678 -20.32768 -19.24018 -18.59887 -17.73457 -17.63381 -17.53013 -17.10519 -16.77869 -16.45971 -16.17617 -15.43628 -15.36111 -15.11845 -15.05443 -14.63452 -14.44768 -14.40812 -14.34084 -14.04873 -13.72290 -13.40712 -13.06830 -12.84902 -12.78467 -12.70617 -12.53057 -12.35403 -12.32548 -12.20050 -12.03778 -11.93172 -11.65709 -11.42823 -11.30198 -11.18676 -11.01797 -10.59100 -10.17858 -10.06261 -9.49573 -8.24961 -6.37779 -0.32812 0.26420 0.43115 0.91463 1.01529 1.42175 1.44114 1.55238 1.87280 2.05237 2.42049 2.62904 3.09472 3.16186 3.45920 3.61177 3.82254 3.83178 3.90664 4.07962 4.13148 4.16725 4.29040 4.29574 4.30402 4.37991 4.41777 4.49961 4.59646 4.75746 4.80097 4.85764 4.89715 4.96065 4.98821 5.10467 5.24900 5.29126 5.32000 5.37378 5.41283 5.44723 5.50678 5.64542 5.68345 5.82847 5.98378 6.09174 6.27221 6.75518 6.87628 7.31714 8.87690 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028104 B = 0.002341 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.053595 B =11957.808699 C =12641.842745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.030 4.030 3 C -0.152 4.152 4 C 0.182 3.818 5 C -0.295 4.295 6 C 0.533 3.467 7 O -0.516 6.516 8 O -0.362 6.362 9 C 0.096 3.904 10 C 0.030 3.970 11 C -0.547 4.547 12 H 0.066 0.934 13 C 0.004 3.996 14 N -0.928 5.928 15 Si 0.973 3.027 16 H -0.270 1.270 17 H -0.280 1.280 18 H -0.262 1.262 19 C 0.108 3.892 20 N -0.311 5.311 21 N -0.311 5.311 22 C 0.106 3.894 23 C -0.118 4.118 24 C -0.102 4.102 25 C -0.106 4.106 26 C -0.096 4.096 27 C -0.130 4.130 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.005 0.995 38 H 0.005 0.995 39 H 0.267 0.733 40 H 0.215 0.785 41 H 0.122 0.878 42 H 0.157 0.843 43 H 0.164 0.836 44 H 0.165 0.835 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.002 -15.478 -26.785 31.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.050 4.050 3 C -0.210 4.210 4 C 0.051 3.949 5 C -0.307 4.307 6 C 0.380 3.620 7 O -0.408 6.408 8 O -0.278 6.278 9 C 0.022 3.978 10 C -0.007 4.007 11 C -0.585 4.585 12 H 0.085 0.915 13 C -0.195 4.195 14 N -0.567 5.567 15 Si 0.797 3.203 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.186 1.186 19 C -0.080 4.080 20 N -0.128 5.128 21 N -0.083 5.083 22 C 0.017 3.983 23 C -0.138 4.138 24 C -0.120 4.120 25 C -0.124 4.124 26 C -0.115 4.115 27 C -0.150 4.150 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.124 0.876 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.024 0.976 38 H 0.023 0.977 39 H 0.076 0.924 40 H 0.231 0.769 41 H 0.140 0.860 42 H 0.175 0.825 43 H 0.182 0.818 44 H 0.182 0.818 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.619 -16.412 -26.882 32.654 hybrid contribution -0.864 1.530 1.340 2.209 sum 7.755 -14.883 -25.542 30.562 Atomic orbital electron populations 1.22048 0.91957 1.02210 1.04776 1.20148 0.97703 0.96072 0.91120 1.22009 1.00323 0.94232 1.04402 1.22036 0.90023 0.86284 0.96601 1.19122 1.16340 1.02435 0.92825 1.20098 0.78132 0.83207 0.80528 1.90655 1.43724 1.52320 1.54068 1.86543 1.67239 1.47780 1.26282 1.23143 0.93623 0.83665 0.97321 1.18981 0.96749 0.96437 0.88525 1.21376 1.31545 1.11960 0.93592 0.91539 1.25981 0.96726 1.00433 0.96341 1.70105 1.43679 1.41259 1.01632 0.85323 0.78477 0.78535 0.77965 1.19560 1.20532 1.18622 1.24598 0.91984 0.89933 1.01513 1.77332 1.25396 1.24163 0.85861 1.45779 1.38661 1.18642 1.05210 1.17877 0.95011 0.99917 0.85487 1.21183 0.93181 0.99303 1.00100 1.21439 1.01694 0.96820 0.92075 1.21769 0.93158 0.98221 0.99214 1.21451 0.97148 0.95584 0.97288 1.21363 0.99440 1.00391 0.93787 0.91482 0.89829 0.92263 0.87560 0.92969 0.89759 0.91978 0.92038 0.91974 0.97612 0.97673 0.92419 0.76891 0.85990 0.82498 0.81819 0.81773 0.84633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 8.90 71.98 0.64 -2.71 16 2 C -0.03 -0.67 2.31 -11.54 -0.03 -0.70 16 3 C -0.15 -3.59 8.89 71.98 0.64 -2.95 16 4 C 0.18 4.99 5.53 42.12 0.23 5.22 16 5 C -0.29 -9.49 5.91 -20.15 -0.12 -9.61 16 6 C 0.53 19.78 7.31 70.19 0.51 20.29 16 7 O -0.52 -19.31 10.13 19.74 0.20 -19.11 16 8 O -0.36 -15.17 10.07 -56.67 -0.57 -15.75 16 9 C 0.10 4.35 5.41 71.98 0.39 4.74 16 10 C 0.03 1.65 5.35 29.85 0.16 1.81 16 11 C -0.55 -31.21 9.11 25.60 0.23 -30.98 16 12 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 13 C 0.00 0.23 5.46 84.65 0.46 0.69 16 14 N -0.93 -56.16 13.29 21.45 0.28 -55.87 16 15 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 19 C 0.11 3.25 11.87 85.67 1.02 4.27 16 20 N -0.31 -9.25 12.34 -56.20 -0.69 -9.95 16 21 N -0.31 -8.26 3.66 -174.48 -0.64 -8.89 16 22 C 0.11 2.22 6.09 38.10 0.23 2.45 16 23 C -0.12 -2.11 9.85 22.39 0.22 -1.89 16 24 C -0.10 -1.10 10.04 22.25 0.22 -0.88 16 25 C -0.11 -0.80 10.04 22.29 0.22 -0.58 16 26 C -0.10 -0.87 10.04 22.25 0.22 -0.65 16 27 C -0.13 -1.98 7.99 22.39 0.18 -1.80 16 28 H 0.07 1.96 4.72 -2.39 -0.01 1.94 16 29 H 0.08 1.52 8.07 -2.39 -0.02 1.50 16 30 H 0.06 1.11 7.85 -2.39 -0.02 1.09 16 31 H 0.11 1.82 5.59 -2.39 -0.01 1.81 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.65 8.07 -2.39 -0.02 1.63 16 34 H 0.06 1.89 4.60 -2.38 -0.01 1.87 16 35 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 37 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.27 15.09 8.31 -92.71 -0.77 14.31 16 40 H 0.21 5.69 8.06 -2.91 -0.02 5.67 16 41 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 42 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 43 H 0.16 0.18 8.06 -2.91 -0.02 0.16 16 44 H 0.16 0.49 8.06 -2.91 -0.02 0.47 16 45 H 0.14 1.94 6.58 -2.91 -0.02 1.92 16 Total: -1.00 -70.86 372.95 7.05 -63.81 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 1.00 Total: 13.05 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: 5.44 Total: -13.27 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: -1.05 Total: -74.72 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -0.37 Total: -34.86 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -70.86 7.05 -63.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045002561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.496 kcal (2) G-P(sol) polarization free energy of solvation -70.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds