Wall clock time and date at job start Tue Mar 31 2020 16:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47007 * 2 1 4 4 C 1.53003 * 109.46985 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47379 * 179.97438 * 4 3 2 6 6 C 1.34772 * 120.00380 * 179.97438 * 5 4 3 7 7 O 1.21286 * 119.99834 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00139 * 179.97438 * 6 5 4 9 9 H 1.09001 * 109.52678 * 299.92132 * 8 6 5 10 10 C 1.53045 * 109.49651 * 179.84052 * 8 6 5 11 11 C 1.53038 * 109.53516 * 178.68183 * 10 8 6 12 12 C 1.53194 * 109.31101 * 61.36880 * 11 10 8 13 13 N 1.46924 * 108.77334 * 305.36035 * 12 11 10 14 14 C 1.34787 * 120.63033 * 233.88527 * 13 12 11 15 15 O 1.21276 * 119.99928 * 179.72235 * 14 13 12 16 16 C 1.50703 * 119.99759 * 359.72119 * 14 13 12 17 17 S 1.80999 * 109.46877 * 180.02562 * 16 14 13 18 18 C 1.76200 * 99.99936 * 179.97438 * 17 16 14 19 19 H 1.07996 * 119.99895 * 0.02562 * 18 17 16 20 20 C 1.38797 * 119.99798 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00049 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00026 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47117 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47759 * 119.99851 * 22 20 18 25 25 H 1.48506 * 109.47059 * 240.00031 * 22 20 18 26 26 C 1.46926 * 118.73991 * 53.61035 * 13 12 11 27 27 H 1.08995 * 109.47595 * 300.00344 * 1 2 3 28 28 H 1.09003 * 109.46551 * 60.00351 * 1 2 3 29 29 H 1.08998 * 109.47192 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47595 * 239.99656 * 2 1 3 31 31 H 1.09003 * 109.46551 * 119.99648 * 2 1 3 32 32 H 1.08997 * 109.47112 * 60.00199 * 3 2 1 33 33 H 1.08995 * 109.47318 * 299.99508 * 3 2 1 34 34 H 1.09006 * 109.46817 * 59.99737 * 4 3 2 35 35 H 1.08999 * 109.47437 * 300.00313 * 4 3 2 36 36 H 0.97003 * 119.99838 * 0.02562 * 5 4 3 37 37 H 1.08994 * 109.45779 * 298.70499 * 10 8 6 38 38 H 1.08999 * 109.45805 * 58.66877 * 10 8 6 39 39 H 1.09005 * 109.49668 * 181.31620 * 11 10 8 40 40 H 1.08996 * 109.50270 * 301.38288 * 11 10 8 41 41 H 1.09004 * 109.58535 * 185.57376 * 12 11 10 42 42 H 1.08994 * 109.59149 * 65.14853 * 12 11 10 43 43 H 1.08998 * 109.47136 * 299.99814 * 16 14 13 44 44 H 1.09001 * 109.47288 * 59.99840 * 16 14 13 45 45 H 0.97005 * 119.99936 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.58178 * 66.18066 * 26 13 12 47 47 H 1.09004 * 109.58598 * 186.60071 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 5.3834 3.0700 0.0010 7 8 6.1716 2.1481 0.0018 8 6 5.8858 4.4907 -0.0003 9 1 5.5249 5.0040 -0.8916 10 6 7.4162 4.4914 0.0052 11 6 7.9275 5.9335 -0.0292 12 6 7.4392 6.6740 1.2198 13 7 5.9770 6.5539 1.2994 14 6 5.2029 7.6517 1.4108 15 8 3.9968 7.5396 1.4706 16 6 5.8361 9.0183 1.4612 17 16 4.5440 10.2767 1.6121 18 6 5.5369 11.7318 1.6488 19 1 6.6120 11.6537 1.5838 20 6 4.9371 12.9786 1.7601 21 7 3.6265 13.0739 1.8377 22 14 5.9896 14.5213 1.7982 23 1 7.4227 14.1456 1.6958 24 1 5.6246 15.3981 0.6567 25 1 5.7585 15.2469 3.0732 26 6 5.3744 5.2149 1.2490 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9337 0.9285 -0.8891 35 1 3.9330 0.9288 0.8908 36 1 3.4281 3.5610 -0.0003 37 1 7.7763 3.9999 0.9089 38 1 7.7827 3.9553 -0.8703 39 1 9.0173 5.9327 -0.0490 40 1 7.5478 6.4330 -0.9205 41 1 7.7164 7.7261 1.1525 42 1 7.8910 6.2311 2.1073 43 1 6.5033 9.0781 2.3211 44 1 6.4052 9.1890 0.5473 45 1 3.2073 13.9452 1.9151 46 1 5.6579 4.6530 2.1389 47 1 4.2891 5.3042 1.2011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050738636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:51 Heat of formation + Delta-G solvation = -99.912007 kcal Electronic energy + Delta-G solvation = -25460.410035 eV Core-core repulsion = 21768.261184 eV Total energy + Delta-G solvation = -3692.148851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.62906 -39.38523 -37.12696 -36.40287 -34.07228 -33.03284 -32.45529 -31.73134 -29.50584 -28.85284 -25.60289 -25.27470 -24.53912 -23.33094 -21.73419 -21.49928 -20.12396 -19.13210 -17.84879 -17.15624 -16.69351 -16.39229 -16.20986 -15.86727 -15.32126 -14.97458 -14.82853 -14.41777 -14.26601 -14.12462 -13.98028 -13.86201 -13.42009 -13.27589 -13.05910 -12.80649 -12.71401 -12.51552 -11.98726 -11.94243 -11.65939 -11.58612 -11.54143 -11.15969 -11.12343 -11.08886 -11.05557 -11.03793 -10.83256 -10.76025 -10.05862 -9.81708 -9.42446 -9.35149 -9.10030 -8.61182 -8.25760 -6.53340 -6.24523 -3.95228 2.35531 2.80198 2.95639 2.99286 3.19727 3.24273 3.29275 3.55192 4.17356 4.37602 4.39021 4.42223 4.50449 4.63549 4.66627 4.82090 4.90368 4.95697 4.97553 5.04822 5.10939 5.13481 5.23290 5.29875 5.37155 5.38221 5.44961 5.55650 5.57397 5.59253 5.62395 5.70212 5.71137 5.80729 5.81904 5.83641 5.89536 5.91962 6.08234 6.10246 6.17661 6.51481 7.20629 7.47101 7.57478 7.96124 8.32744 8.47288 9.21120 10.82922 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016332 B = 0.002328 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.029679 B =12023.071816 C =13559.125685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.135 4.135 4 C 0.118 3.882 5 N -0.732 5.732 6 C 0.523 3.477 7 O -0.539 6.539 8 C -0.124 4.124 9 H 0.103 0.897 10 C -0.097 4.097 11 C -0.136 4.136 12 C 0.105 3.895 13 N -0.619 5.619 14 C 0.537 3.463 15 O -0.517 6.517 16 C -0.151 4.151 17 S -0.062 6.062 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.125 3.875 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.404 0.596 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.268 0.732 46 H 0.069 0.931 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.723 -23.187 -4.340 23.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.172 4.172 4 C -0.005 4.005 5 N -0.384 5.384 6 C 0.309 3.691 7 O -0.416 6.416 8 C -0.146 4.146 9 H 0.121 0.879 10 C -0.135 4.135 11 C -0.175 4.175 12 C -0.018 4.018 13 N -0.355 5.355 14 C 0.325 3.675 15 O -0.391 6.391 16 C -0.301 4.301 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C 0.002 3.998 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.239 0.761 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.111 0.889 42 H 0.087 0.913 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.078 0.922 46 H 0.087 0.913 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.334 -23.898 -4.222 24.304 hybrid contribution 1.764 1.464 -0.102 2.295 sum 3.098 -22.433 -4.324 23.055 Atomic orbital electron populations 1.21771 0.95412 1.01791 1.02101 1.21426 0.96218 0.95826 1.02417 1.21859 0.94003 0.98175 1.03213 1.21380 0.93885 0.82928 1.02342 1.46114 1.07371 1.09173 1.75770 1.20522 0.82048 0.91151 0.75371 1.90694 1.55347 1.46294 1.49264 1.21777 0.98670 0.92702 1.01473 0.87893 1.21321 0.92018 0.96536 1.03640 1.21967 1.01241 0.95553 0.98689 1.21789 0.79720 1.02284 0.98014 1.48077 1.06954 1.05424 1.75024 1.20372 0.86921 0.85369 0.74841 1.90682 1.14103 1.86194 1.48152 1.23557 1.05713 0.96012 1.04828 1.85391 1.06733 0.95386 1.95972 1.22895 0.94875 0.92073 1.58423 0.90855 1.24996 0.95309 0.98777 0.94533 1.70027 1.08613 1.25019 1.46602 0.86115 0.79928 0.81527 0.77917 1.19594 1.20567 1.20564 1.21363 0.99858 0.82949 0.95675 0.92525 0.92605 0.92617 0.91738 0.91679 0.90961 0.91095 0.91565 0.91478 0.76078 0.90983 0.90906 0.90141 0.91114 0.88923 0.91271 0.89163 0.89146 0.92226 0.91309 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.12 -0.67 5.93 -26.73 -0.16 -0.83 16 3 C -0.13 -0.82 5.33 -26.73 -0.14 -0.96 16 4 C 0.12 0.93 5.67 -4.04 -0.02 0.91 16 5 N -0.73 -6.45 5.46 -60.29 -0.33 -6.78 16 6 C 0.52 5.76 7.16 -10.99 -0.08 5.68 16 7 O -0.54 -7.64 15.98 5.55 0.09 -7.55 16 8 C -0.12 -1.26 2.68 -91.65 -0.25 -1.50 16 9 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 10 C -0.10 -0.94 4.46 -26.69 -0.12 -1.06 16 11 C -0.14 -1.21 6.08 -26.61 -0.16 -1.37 16 12 C 0.11 1.10 6.34 -3.71 -0.02 1.08 16 13 N -0.62 -8.34 2.97 -172.77 -0.51 -8.85 16 14 C 0.54 9.74 7.72 -10.98 -0.08 9.65 16 15 O -0.52 -11.17 15.27 5.56 0.08 -11.08 16 16 C -0.15 -2.96 4.50 36.01 0.16 -2.79 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 18 C -0.53 -14.96 9.50 30.94 0.29 -14.66 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 21 N -0.87 -25.82 13.22 55.49 0.73 -25.09 16 22 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 C 0.13 1.45 5.57 -3.71 -0.02 1.43 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.40 3.01 8.01 -40.82 -0.33 2.69 16 37 H 0.07 0.73 8.13 -51.93 -0.42 0.30 16 38 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.09 0.98 5.93 -51.93 -0.31 0.68 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.65 7.95 -51.92 -0.41 1.23 16 44 H 0.09 1.63 7.69 -51.92 -0.40 1.24 16 45 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.10 1.18 6.60 -51.93 -0.34 0.84 16 LS Contribution 393.17 15.07 5.93 5.93 Total: -1.00 -34.74 393.17 -9.67 -44.41 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -8.09 Total: -0.33 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -0.33 Total: -2.92 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: -0.11 Total: -40.71 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.17 Total: -18.64 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.74 -9.67 -44.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050738636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.505 kcal (2) G-P(sol) polarization free energy of solvation -34.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds