Wall clock time and date at job start Tue Mar 31 2020 16:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47007 * 2 1 4 4 C 1.53003 * 109.46985 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47379 * 179.97438 * 4 3 2 6 6 C 1.34772 * 120.00380 * 179.97438 * 5 4 3 7 7 O 1.21286 * 119.99834 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00139 * 179.97438 * 6 5 4 9 9 H 1.09001 * 109.52678 * 299.92132 * 8 6 5 10 10 C 1.53045 * 109.49651 * 179.84052 * 8 6 5 11 11 C 1.53038 * 109.53516 * 178.68183 * 10 8 6 12 12 C 1.53194 * 109.31101 * 61.36880 * 11 10 8 13 13 N 1.46924 * 108.77334 * 305.36035 * 12 11 10 14 14 C 1.34787 * 120.63033 * 233.88527 * 13 12 11 15 15 O 1.21276 * 119.99928 * 179.72235 * 14 13 12 16 16 C 1.50703 * 119.99759 * 359.72119 * 14 13 12 17 17 S 1.80999 * 109.46877 * 180.02562 * 16 14 13 18 18 C 1.76200 * 99.99936 * 179.97438 * 17 16 14 19 19 H 1.07996 * 119.99895 * 0.02562 * 18 17 16 20 20 C 1.38797 * 119.99798 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00049 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00026 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47117 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47759 * 119.99851 * 22 20 18 25 25 H 1.48506 * 109.47059 * 240.00031 * 22 20 18 26 26 C 1.46926 * 118.73991 * 53.61035 * 13 12 11 27 27 H 1.08995 * 109.47595 * 300.00344 * 1 2 3 28 28 H 1.09003 * 109.46551 * 60.00351 * 1 2 3 29 29 H 1.08998 * 109.47192 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47595 * 239.99656 * 2 1 3 31 31 H 1.09003 * 109.46551 * 119.99648 * 2 1 3 32 32 H 1.08997 * 109.47112 * 60.00199 * 3 2 1 33 33 H 1.08995 * 109.47318 * 299.99508 * 3 2 1 34 34 H 1.09006 * 109.46817 * 59.99737 * 4 3 2 35 35 H 1.08999 * 109.47437 * 300.00313 * 4 3 2 36 36 H 0.97003 * 119.99838 * 0.02562 * 5 4 3 37 37 H 1.08994 * 109.45779 * 298.70499 * 10 8 6 38 38 H 1.08999 * 109.45805 * 58.66877 * 10 8 6 39 39 H 1.09005 * 109.49668 * 181.31620 * 11 10 8 40 40 H 1.08996 * 109.50270 * 301.38288 * 11 10 8 41 41 H 1.09004 * 109.58535 * 185.57376 * 12 11 10 42 42 H 1.08994 * 109.59149 * 65.14853 * 12 11 10 43 43 H 1.08998 * 109.47136 * 299.99814 * 16 14 13 44 44 H 1.09001 * 109.47288 * 59.99840 * 16 14 13 45 45 H 0.97005 * 119.99936 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.58178 * 66.18066 * 26 13 12 47 47 H 1.09004 * 109.58598 * 186.60071 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 5.3834 3.0700 0.0010 7 8 6.1716 2.1481 0.0018 8 6 5.8858 4.4907 -0.0003 9 1 5.5249 5.0040 -0.8916 10 6 7.4162 4.4914 0.0052 11 6 7.9275 5.9335 -0.0292 12 6 7.4392 6.6740 1.2198 13 7 5.9770 6.5539 1.2994 14 6 5.2029 7.6517 1.4108 15 8 3.9968 7.5396 1.4706 16 6 5.8361 9.0183 1.4612 17 16 4.5440 10.2767 1.6121 18 6 5.5369 11.7318 1.6488 19 1 6.6120 11.6537 1.5838 20 6 4.9371 12.9786 1.7601 21 7 3.6265 13.0739 1.8377 22 14 5.9896 14.5213 1.7982 23 1 7.4227 14.1456 1.6958 24 1 5.6246 15.3981 0.6567 25 1 5.7585 15.2469 3.0732 26 6 5.3744 5.2149 1.2490 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9337 0.9285 -0.8891 35 1 3.9330 0.9288 0.8908 36 1 3.4281 3.5610 -0.0003 37 1 7.7763 3.9999 0.9089 38 1 7.7827 3.9553 -0.8703 39 1 9.0173 5.9327 -0.0490 40 1 7.5478 6.4330 -0.9205 41 1 7.7164 7.7261 1.1525 42 1 7.8910 6.2311 2.1073 43 1 6.5033 9.0781 2.3211 44 1 6.4052 9.1890 0.5473 45 1 3.2073 13.9452 1.9151 46 1 5.6579 4.6530 2.1389 47 1 4.2891 5.3042 1.2011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050738636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:50 Heat of formation + Delta-G solvation = -122.356559 kcal Electronic energy + Delta-G solvation = -25461.383304 eV Core-core repulsion = 21768.261184 eV Total energy + Delta-G solvation = -3693.122120 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.62804 -40.52882 -38.19966 -37.13460 -34.77627 -34.57442 -34.11292 -32.60462 -30.76239 -29.65971 -27.68513 -26.24374 -25.46207 -24.03310 -22.43175 -22.25548 -21.02847 -20.37125 -19.53061 -18.38132 -17.79900 -17.26680 -17.05942 -16.87291 -16.76431 -16.53623 -16.02523 -15.73753 -15.21325 -15.06434 -14.99793 -14.53733 -14.48745 -14.36277 -14.21855 -14.10966 -13.56283 -13.44907 -13.28652 -13.14085 -12.91076 -12.59429 -12.58576 -12.45538 -12.15046 -12.01560 -11.98539 -11.97788 -11.69042 -11.63778 -11.52944 -11.14865 -11.05496 -10.77141 -10.24112 -10.16075 -9.73891 -8.65189 -8.33826 -6.11288 1.24201 1.41245 1.42265 1.49773 1.57491 1.61120 2.01404 2.20797 2.28405 3.00633 3.25081 3.53679 3.59176 3.76187 3.83472 3.84217 3.99398 4.01830 4.11563 4.17476 4.23024 4.28385 4.42503 4.45424 4.51089 4.56347 4.61573 4.65632 4.72109 4.78228 4.89913 4.91176 4.91968 5.03513 5.05747 5.14005 5.23416 5.33807 5.35081 5.41363 5.43765 5.45597 5.47729 6.21074 6.24765 6.42750 7.07994 7.10689 7.12735 8.75471 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016332 B = 0.002328 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.029679 B =12023.071816 C =13559.125685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.127 4.127 4 C 0.119 3.881 5 N -0.724 5.724 6 C 0.524 3.476 7 O -0.572 6.572 8 C -0.115 4.115 9 H 0.107 0.893 10 C -0.094 4.094 11 C -0.127 4.127 12 C 0.096 3.904 13 N -0.605 5.605 14 C 0.536 3.464 15 O -0.561 6.561 16 C -0.125 4.125 17 S -0.150 6.150 18 C -0.544 4.544 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.997 3.003 23 H -0.256 1.256 24 H -0.275 1.275 25 H -0.275 1.275 26 C 0.126 3.874 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.412 0.588 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.067 0.933 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.271 0.729 46 H 0.079 0.921 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.810 -23.510 -4.635 24.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.165 4.165 4 C -0.005 4.005 5 N -0.375 5.375 6 C 0.310 3.690 7 O -0.451 6.451 8 C -0.137 4.137 9 H 0.125 0.875 10 C -0.132 4.132 11 C -0.165 4.165 12 C -0.026 4.026 13 N -0.339 5.339 14 C 0.324 3.676 15 O -0.439 6.439 16 C -0.276 4.276 17 S 0.078 5.922 18 C -0.692 4.692 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.819 3.181 23 H -0.179 1.179 24 H -0.200 1.200 25 H -0.201 1.201 26 C 0.003 3.997 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.248 0.752 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.124 0.876 40 H 0.085 0.915 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.080 0.920 46 H 0.097 0.903 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.441 -24.254 -4.525 24.911 hybrid contribution 1.140 1.402 -0.015 1.807 sum 4.581 -22.851 -4.539 23.744 Atomic orbital electron populations 1.21771 0.95155 1.02144 1.02011 1.21425 0.96393 0.95362 1.02632 1.21803 0.92533 0.98719 1.03411 1.21430 0.95040 0.82212 1.01791 1.46134 1.06975 1.09966 1.74464 1.20622 0.82374 0.91037 0.74946 1.90682 1.56221 1.47151 1.51070 1.21696 0.99311 0.91952 1.00722 0.87548 1.21308 0.91252 0.97074 1.03599 1.21928 1.02686 0.94441 0.97478 1.22116 0.77540 1.03046 0.99887 1.48036 1.08103 1.04832 1.72921 1.20108 0.86510 0.85880 0.75062 1.90669 1.15880 1.86725 1.50634 1.23384 1.03234 0.94528 1.06457 1.85555 1.11762 0.98596 1.96330 1.23229 0.95269 0.92488 1.58174 0.89853 1.26110 0.96645 1.02582 0.93841 1.70186 1.10754 1.26001 1.47814 0.84923 0.78526 0.76613 0.78005 1.17940 1.20016 1.20066 1.21454 0.99416 0.81965 0.96899 0.92724 0.92587 0.92083 0.91453 0.91588 0.90913 0.90709 0.92013 0.92114 0.75221 0.91123 0.90888 0.87641 0.91471 0.88712 0.89260 0.87431 0.87242 0.92035 0.90267 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 71.98 0.71 -0.79 16 2 C -0.12 -1.23 5.93 30.60 0.18 -1.04 16 3 C -0.13 -1.44 5.33 30.60 0.16 -1.28 16 4 C 0.12 1.80 5.67 86.38 0.49 2.29 16 5 N -0.72 -12.22 5.46 -463.06 -2.53 -14.74 16 6 C 0.52 11.03 7.16 87.66 0.63 11.66 16 7 O -0.57 -15.76 15.98 -3.05 -0.05 -15.81 16 8 C -0.11 -2.15 2.68 -11.46 -0.03 -2.19 16 9 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 10 C -0.09 -1.60 4.46 30.62 0.14 -1.47 16 11 C -0.13 -1.87 6.08 30.67 0.19 -1.68 16 12 C 0.10 1.73 6.34 86.36 0.55 2.28 16 13 N -0.60 -15.24 2.97 -818.90 -2.43 -17.68 16 14 C 0.54 19.12 7.72 87.66 0.68 19.79 16 15 O -0.56 -24.61 15.27 -3.02 -0.05 -24.66 16 16 C -0.13 -4.79 4.50 71.24 0.32 -4.47 16 17 S -0.15 -8.11 20.57 -56.49 -1.16 -9.28 16 18 C -0.54 -30.41 9.50 67.95 0.65 -29.76 16 19 H 0.08 4.32 7.80 -2.91 -0.02 4.29 16 20 C 0.01 0.73 5.49 84.86 0.47 1.19 16 21 N -0.91 -55.20 13.22 21.65 0.29 -54.92 16 22 Si 1.00 42.91 29.55 68.60 2.03 44.94 16 23 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 26 C 0.13 2.74 5.57 86.36 0.48 3.22 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.41 5.84 8.01 -92.71 -0.74 5.10 16 37 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 38 H 0.07 1.28 8.07 -2.39 -0.02 1.26 16 39 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 1.71 5.93 -2.38 -0.01 1.69 16 42 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.11 3.74 7.95 -2.40 -0.02 3.72 16 44 H 0.11 3.76 7.69 -2.39 -0.02 3.75 16 45 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 46 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.09 2.10 6.60 -2.38 -0.02 2.08 16 Total: -1.00 -76.46 393.17 1.91 -74.56 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.21 Total: 19.83 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 5.61 Total: -2.24 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -4.68 Total: -87.34 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -0.09 Total: -40.47 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: -8.11 SS G_CDS: -1.16 Total: -9.28 kcal Total: -76.46 1.91 -74.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050738636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.801 kcal (2) G-P(sol) polarization free energy of solvation -76.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds