Wall clock time and date at job start Tue Mar 31 2020 16:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52996 * 109.46975 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46998 * 179.97438 * 4 3 2 6 6 C 1.34776 * 119.99811 * 180.02562 * 5 4 3 7 7 O 1.21283 * 120.00497 * 359.97438 * 6 5 4 8 8 C 1.50705 * 120.00162 * 180.02562 * 6 5 4 9 9 H 1.09004 * 109.49401 * 60.00155 * 8 6 5 10 10 C 1.53039 * 109.50124 * 180.02562 * 8 6 5 11 11 C 1.53038 * 109.53916 * 181.31617 * 10 8 6 12 12 C 1.53187 * 109.31274 * 298.63612 * 11 10 8 13 13 N 1.46930 * 108.77643 * 54.63513 * 12 11 10 14 14 C 1.34783 * 120.63130 * 126.43035 * 13 12 11 15 15 O 1.21281 * 120.00134 * 179.97438 * 14 13 12 16 16 C 1.50698 * 119.99903 * 0.02562 * 14 13 12 17 17 S 1.81000 * 109.47126 * 179.97438 * 16 14 13 18 18 C 1.76196 * 100.00199 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99732 * 0.02562 * 18 17 16 20 20 C 1.38794 * 120.00001 * 180.02562 * 18 17 16 21 21 N 1.31622 * 120.00086 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99850 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46892 * 90.00326 * 22 20 18 24 24 H 1.48498 * 109.47060 * 210.00074 * 22 20 18 25 25 H 1.48499 * 109.47244 * 330.00340 * 22 20 18 26 26 C 1.46929 * 118.76373 * 306.41028 * 13 12 11 27 27 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 30 30 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 31 31 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 32 32 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 33 33 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 34 34 H 1.09001 * 109.47367 * 299.99815 * 4 3 2 35 35 H 1.09004 * 109.47368 * 60.00217 * 4 3 2 36 36 H 0.96993 * 120.00140 * 0.02562 * 5 4 3 37 37 H 1.09001 * 109.45897 * 301.33948 * 10 8 6 38 38 H 1.08997 * 109.45543 * 61.31232 * 10 8 6 39 39 H 1.09001 * 109.49408 * 58.58927 * 11 10 8 40 40 H 1.08993 * 109.49963 * 178.65162 * 11 10 8 41 41 H 1.09005 * 109.58436 * 174.42020 * 12 11 10 42 42 H 1.08992 * 109.59199 * 294.84677 * 12 11 10 43 43 H 1.09000 * 109.47292 * 300.00091 * 16 14 13 44 44 H 1.09001 * 109.47117 * 60.00081 * 16 14 13 45 45 H 0.97010 * 119.99977 * 180.02562 * 21 20 18 46 46 H 1.08992 * 109.56446 * 293.78451 * 26 13 12 47 47 H 1.09002 * 109.61449 * 173.35479 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8237 0.0000 6 6 5.3835 3.0699 -0.0001 7 8 6.1716 2.1481 0.0008 8 6 5.8859 4.4907 -0.0001 9 1 5.5229 5.0049 0.8898 10 6 7.4163 4.4914 -0.0009 11 6 7.9275 5.9335 0.0322 12 6 7.4431 6.6716 -1.2197 13 7 5.9811 6.5514 -1.3035 14 6 5.2077 7.6485 -1.4258 15 8 4.0021 7.5360 -1.4945 16 6 5.8412 9.0148 -1.4783 17 16 4.5501 10.2724 -1.6446 18 6 5.5431 11.7275 -1.6812 19 1 6.6179 11.6496 -1.6091 20 6 4.9441 12.9736 -1.8028 21 7 3.6342 13.0684 -1.8902 22 14 5.9970 14.5161 -1.8425 23 1 6.3620 14.8303 -3.2472 24 1 5.2341 15.6511 -1.2636 25 1 7.2317 14.2932 -1.0481 26 6 5.3776 5.2127 -1.2520 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.9330 0.9287 0.8909 35 1 3.9338 0.9285 -0.8891 36 1 3.4281 3.5609 -0.0003 37 1 7.7801 3.9569 0.8766 38 1 7.7791 3.9983 -0.9027 39 1 7.5447 6.4348 0.9211 40 1 9.0172 5.9328 0.0558 41 1 7.7200 7.7238 -1.1536 42 1 7.8975 6.2269 -2.1049 43 1 6.4037 9.1901 -0.5613 44 1 6.5144 9.0705 -2.3338 45 1 3.2155 13.9393 -1.9756 46 1 5.6633 4.6492 -2.1401 47 1 4.2922 5.3021 -1.2068 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050738637.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:54 Heat of formation + Delta-G solvation = -99.872964 kcal Electronic energy + Delta-G solvation = -25458.565148 eV Core-core repulsion = 21766.417989 eV Total energy + Delta-G solvation = -3692.147158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.62806 -39.38467 -37.12653 -36.40309 -34.07226 -33.03299 -32.45445 -31.73194 -29.50583 -28.85302 -25.60032 -25.27453 -24.53924 -23.33118 -21.73437 -21.49795 -20.12284 -19.13308 -17.84766 -17.15466 -16.69330 -16.39206 -16.20972 -15.86637 -15.32099 -14.97462 -14.82580 -14.41766 -14.26562 -14.12531 -13.97905 -13.86150 -13.42116 -13.27736 -13.05947 -12.80606 -12.71378 -12.51452 -11.98651 -11.94182 -11.65926 -11.58651 -11.54165 -11.15906 -11.12385 -11.07760 -11.05561 -11.04345 -10.83307 -10.76393 -10.05868 -9.82597 -9.42385 -9.35175 -9.09092 -8.61190 -8.26083 -6.53248 -6.24176 -3.95007 2.35517 2.80190 2.95507 2.99438 3.20678 3.24175 3.28563 3.55127 4.17660 4.37596 4.39051 4.42190 4.50409 4.63473 4.66627 4.82063 4.90409 4.95663 4.97564 5.04804 5.11179 5.13460 5.23262 5.29900 5.37146 5.38317 5.44935 5.55684 5.57430 5.59273 5.62387 5.70191 5.71133 5.80792 5.81876 5.83671 5.89504 5.91916 6.08263 6.10206 6.17610 6.51489 7.20629 7.47114 7.57276 7.96095 8.32661 8.47334 9.21293 10.83197 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016336 B = 0.002327 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.545503 B =12028.412225 C =13564.759726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.135 4.135 4 C 0.118 3.882 5 N -0.732 5.732 6 C 0.523 3.477 7 O -0.539 6.539 8 C -0.124 4.124 9 H 0.103 0.897 10 C -0.097 4.097 11 C -0.136 4.136 12 C 0.105 3.895 13 N -0.619 5.619 14 C 0.537 3.463 15 O -0.517 6.517 16 C -0.151 4.151 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.125 3.875 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.404 0.596 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.268 0.732 46 H 0.068 0.932 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.696 -23.168 4.488 23.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.173 4.173 4 C -0.005 4.005 5 N -0.384 5.384 6 C 0.309 3.691 7 O -0.416 6.416 8 C -0.146 4.146 9 H 0.121 0.879 10 C -0.135 4.135 11 C -0.174 4.174 12 C -0.018 4.018 13 N -0.355 5.355 14 C 0.325 3.675 15 O -0.391 6.391 16 C -0.301 4.301 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C 0.002 3.998 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.239 0.761 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.087 0.913 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.087 0.913 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.304 -23.876 4.364 24.307 hybrid contribution 1.774 1.461 0.101 2.301 sum 3.078 -22.415 4.465 23.062 Atomic orbital electron populations 1.21771 0.95412 1.01791 1.02101 1.21426 0.96218 0.95826 1.02417 1.21859 0.94003 0.98176 1.03214 1.21380 0.93885 0.82926 1.02341 1.46114 1.07368 1.09173 1.75775 1.20525 0.82048 0.91153 0.75371 1.90694 1.55339 1.46302 1.49259 1.21777 0.98677 0.92709 1.01448 0.87899 1.21321 0.92021 0.96538 1.03638 1.21963 1.01252 0.95560 0.98664 1.21787 0.79728 1.02292 0.97991 1.48076 1.06991 1.05470 1.74945 1.20371 0.86917 0.85369 0.74851 1.90683 1.14131 1.86174 1.48149 1.23558 1.05713 0.96019 1.04828 1.85387 1.06799 0.95433 1.95823 1.22852 0.94886 0.92128 1.58463 0.90914 1.24990 0.95304 0.98758 0.94528 1.70015 1.08662 1.25158 1.46427 0.86169 0.79762 0.81129 0.78452 1.20262 1.20752 1.19678 1.21361 0.99863 0.82966 0.95642 0.92525 0.92617 0.92605 0.91739 0.91677 0.90953 0.91103 0.91557 0.91484 0.76080 0.90905 0.90984 0.91116 0.90137 0.88923 0.91284 0.89146 0.89167 0.92172 0.91325 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.12 -0.67 5.93 -26.73 -0.16 -0.83 16 3 C -0.13 -0.82 5.33 -26.73 -0.14 -0.96 16 4 C 0.12 0.93 5.67 -4.04 -0.02 0.91 16 5 N -0.73 -6.44 5.46 -60.29 -0.33 -6.77 16 6 C 0.52 5.76 7.16 -10.98 -0.08 5.68 16 7 O -0.54 -7.64 15.98 5.55 0.09 -7.55 16 8 C -0.12 -1.26 2.67 -91.65 -0.25 -1.50 16 9 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 10 C -0.10 -0.94 4.46 -26.69 -0.12 -1.06 16 11 C -0.14 -1.21 6.08 -26.62 -0.16 -1.37 16 12 C 0.11 1.11 6.34 -3.71 -0.02 1.08 16 13 N -0.62 -8.34 2.97 -172.77 -0.51 -8.85 16 14 C 0.54 9.74 7.72 -10.98 -0.08 9.65 16 15 O -0.52 -11.17 15.27 5.56 0.08 -11.09 16 16 C -0.15 -2.96 4.50 36.00 0.16 -2.80 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 18 C -0.54 -14.97 9.50 30.94 0.29 -14.68 16 19 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 20 C 0.07 2.07 5.49 -17.44 -0.10 1.97 16 21 N -0.87 -25.83 13.22 55.49 0.73 -25.09 16 22 Si 0.92 21.12 29.55 -169.99 -5.02 16.10 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 C 0.13 1.45 5.57 -3.71 -0.02 1.43 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.40 3.01 8.02 -40.82 -0.33 2.68 16 37 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 38 H 0.07 0.73 8.13 -51.93 -0.42 0.30 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.98 5.94 -51.93 -0.31 0.68 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.64 7.69 -51.92 -0.40 1.24 16 44 H 0.09 1.64 7.94 -51.91 -0.41 1.23 16 45 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.10 1.19 6.61 -51.93 -0.34 0.84 16 LS Contribution 393.19 15.07 5.93 5.93 Total: -1.00 -34.72 393.19 -9.67 -44.39 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -8.09 Total: -0.30 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -0.33 Total: -2.92 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: -0.11 Total: -40.72 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.17 Total: -18.64 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.72 -9.67 -44.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050738637.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.484 kcal (2) G-P(sol) polarization free energy of solvation -34.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds