Wall clock time and date at job start Tue Mar 31 2020 16:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52996 * 109.46975 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46998 * 179.97438 * 4 3 2 6 6 C 1.34776 * 119.99811 * 180.02562 * 5 4 3 7 7 O 1.21283 * 120.00497 * 359.97438 * 6 5 4 8 8 C 1.50705 * 120.00162 * 180.02562 * 6 5 4 9 9 H 1.09004 * 109.49401 * 60.00155 * 8 6 5 10 10 C 1.53039 * 109.50124 * 180.02562 * 8 6 5 11 11 C 1.53038 * 109.53916 * 181.31617 * 10 8 6 12 12 C 1.53187 * 109.31274 * 298.63612 * 11 10 8 13 13 N 1.46930 * 108.77643 * 54.63513 * 12 11 10 14 14 C 1.34783 * 120.63130 * 126.43035 * 13 12 11 15 15 O 1.21281 * 120.00134 * 179.97438 * 14 13 12 16 16 C 1.50698 * 119.99903 * 0.02562 * 14 13 12 17 17 S 1.81000 * 109.47126 * 179.97438 * 16 14 13 18 18 C 1.76196 * 100.00199 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99732 * 0.02562 * 18 17 16 20 20 C 1.38794 * 120.00001 * 180.02562 * 18 17 16 21 21 N 1.31622 * 120.00086 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99850 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46892 * 90.00326 * 22 20 18 24 24 H 1.48498 * 109.47060 * 210.00074 * 22 20 18 25 25 H 1.48499 * 109.47244 * 330.00340 * 22 20 18 26 26 C 1.46929 * 118.76373 * 306.41028 * 13 12 11 27 27 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 30 30 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 31 31 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 32 32 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 33 33 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 34 34 H 1.09001 * 109.47367 * 299.99815 * 4 3 2 35 35 H 1.09004 * 109.47368 * 60.00217 * 4 3 2 36 36 H 0.96993 * 120.00140 * 0.02562 * 5 4 3 37 37 H 1.09001 * 109.45897 * 301.33948 * 10 8 6 38 38 H 1.08997 * 109.45543 * 61.31232 * 10 8 6 39 39 H 1.09001 * 109.49408 * 58.58927 * 11 10 8 40 40 H 1.08993 * 109.49963 * 178.65162 * 11 10 8 41 41 H 1.09005 * 109.58436 * 174.42020 * 12 11 10 42 42 H 1.08992 * 109.59199 * 294.84677 * 12 11 10 43 43 H 1.09000 * 109.47292 * 300.00091 * 16 14 13 44 44 H 1.09001 * 109.47117 * 60.00081 * 16 14 13 45 45 H 0.97010 * 119.99977 * 180.02562 * 21 20 18 46 46 H 1.08992 * 109.56446 * 293.78451 * 26 13 12 47 47 H 1.09002 * 109.61449 * 173.35479 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8237 0.0000 6 6 5.3835 3.0699 -0.0001 7 8 6.1716 2.1481 0.0008 8 6 5.8859 4.4907 -0.0001 9 1 5.5229 5.0049 0.8898 10 6 7.4163 4.4914 -0.0009 11 6 7.9275 5.9335 0.0322 12 6 7.4431 6.6716 -1.2197 13 7 5.9811 6.5514 -1.3035 14 6 5.2077 7.6485 -1.4258 15 8 4.0021 7.5360 -1.4945 16 6 5.8412 9.0148 -1.4783 17 16 4.5501 10.2724 -1.6446 18 6 5.5431 11.7275 -1.6812 19 1 6.6179 11.6496 -1.6091 20 6 4.9441 12.9736 -1.8028 21 7 3.6342 13.0684 -1.8902 22 14 5.9970 14.5161 -1.8425 23 1 6.3620 14.8303 -3.2472 24 1 5.2341 15.6511 -1.2636 25 1 7.2317 14.2932 -1.0481 26 6 5.3776 5.2127 -1.2520 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.9330 0.9287 0.8909 35 1 3.9338 0.9285 -0.8891 36 1 3.4281 3.5609 -0.0003 37 1 7.7801 3.9569 0.8766 38 1 7.7791 3.9983 -0.9027 39 1 7.5447 6.4348 0.9211 40 1 9.0172 5.9328 0.0558 41 1 7.7200 7.7238 -1.1536 42 1 7.8975 6.2269 -2.1049 43 1 6.4037 9.1901 -0.5613 44 1 6.5144 9.0705 -2.3338 45 1 3.2155 13.9393 -1.9756 46 1 5.6633 4.6492 -2.1401 47 1 4.2922 5.3021 -1.2068 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050738637.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:53 Heat of formation + Delta-G solvation = -122.303886 kcal Electronic energy + Delta-G solvation = -25459.537825 eV Core-core repulsion = 21766.417989 eV Total energy + Delta-G solvation = -3693.119836 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.62681 -40.52858 -38.19902 -37.13479 -34.77598 -34.57341 -34.11329 -32.60526 -30.76219 -29.65997 -27.68139 -26.24400 -25.46229 -24.03312 -22.43105 -22.25472 -21.02747 -20.37074 -19.52975 -18.38027 -17.79866 -17.26594 -17.05911 -16.86871 -16.76387 -16.53663 -16.02407 -15.73734 -15.21336 -15.06334 -14.99787 -14.53661 -14.48661 -14.36440 -14.21913 -14.10966 -13.56369 -13.44776 -13.28671 -13.14508 -12.88595 -12.60697 -12.58604 -12.45534 -12.15081 -12.01570 -11.98691 -11.97715 -11.70297 -11.64212 -11.52929 -11.13111 -11.05470 -10.77094 -10.24409 -10.16083 -9.73953 -8.65129 -8.33463 -6.11066 1.24168 1.41317 1.43464 1.49617 1.56925 1.60960 2.01359 2.20839 2.28733 3.00890 3.25180 3.53731 3.59187 3.76141 3.83518 3.84244 3.99374 4.01820 4.11568 4.17462 4.23036 4.28414 4.42503 4.45437 4.51110 4.56417 4.61563 4.65627 4.72091 4.78227 4.89915 4.91177 4.91960 5.03531 5.05791 5.13977 5.23418 5.33796 5.35081 5.41346 5.43550 5.45583 5.47702 6.20968 6.24741 6.42796 7.08173 7.10696 7.12747 8.75564 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016336 B = 0.002327 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.545503 B =12028.412225 C =13564.759726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.127 4.127 4 C 0.119 3.881 5 N -0.724 5.724 6 C 0.524 3.476 7 O -0.572 6.572 8 C -0.115 4.115 9 H 0.107 0.893 10 C -0.094 4.094 11 C -0.127 4.127 12 C 0.096 3.904 13 N -0.605 5.605 14 C 0.536 3.464 15 O -0.561 6.561 16 C -0.125 4.125 17 S -0.150 6.150 18 C -0.545 4.545 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.997 3.003 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.257 1.257 26 C 0.126 3.874 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.412 0.588 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.271 0.729 46 H 0.079 0.921 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.788 -23.485 4.810 24.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.165 4.165 4 C -0.005 4.005 5 N -0.375 5.375 6 C 0.310 3.690 7 O -0.451 6.451 8 C -0.137 4.137 9 H 0.125 0.875 10 C -0.132 4.132 11 C -0.165 4.165 12 C -0.026 4.026 13 N -0.339 5.339 14 C 0.324 3.676 15 O -0.439 6.439 16 C -0.276 4.276 17 S 0.078 5.922 18 C -0.692 4.692 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.819 3.181 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.181 1.181 26 C 0.003 3.997 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.248 0.752 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.124 0.876 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.097 0.903 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.416 -24.227 4.692 24.912 hybrid contribution 1.150 1.396 0.006 1.809 sum 4.566 -22.831 4.698 23.752 Atomic orbital electron populations 1.21771 0.95154 1.02144 1.02011 1.21426 0.96393 0.95363 1.02631 1.21803 0.92533 0.98719 1.03412 1.21431 0.95040 0.82210 1.01790 1.46135 1.06973 1.09967 1.74468 1.20625 0.82375 0.91039 0.74946 1.90682 1.56214 1.47159 1.51067 1.21696 0.99318 0.91960 1.00693 0.87536 1.21308 0.91256 0.97078 1.03596 1.21924 1.02700 0.94448 0.97448 1.22114 0.77547 1.03059 0.99863 1.48035 1.08140 1.04875 1.72840 1.20108 0.86505 0.85880 0.75073 1.90671 1.15910 1.86706 1.50631 1.23383 1.03239 0.94535 1.06448 1.85552 1.11831 0.98651 1.96191 1.23195 0.95311 0.92534 1.58200 0.89857 1.26106 0.96641 1.02571 0.93833 1.70179 1.10805 1.26091 1.47662 0.84975 0.78081 0.76190 0.78880 1.19405 1.20419 1.18111 1.21451 0.99421 0.81984 0.96867 0.92727 0.92083 0.92584 0.91451 0.91590 0.90910 0.90710 0.91998 0.92128 0.75221 0.90879 0.91135 0.91464 0.87636 0.88705 0.89283 0.87250 0.87421 0.92036 0.90303 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 71.98 0.71 -0.79 16 2 C -0.12 -1.23 5.93 30.60 0.18 -1.04 16 3 C -0.13 -1.44 5.33 30.59 0.16 -1.27 16 4 C 0.12 1.80 5.67 86.38 0.49 2.29 16 5 N -0.72 -12.21 5.46 -463.04 -2.53 -14.74 16 6 C 0.52 11.03 7.16 87.66 0.63 11.65 16 7 O -0.57 -15.75 15.98 -3.04 -0.05 -15.80 16 8 C -0.11 -2.15 2.67 -11.46 -0.03 -2.18 16 9 H 0.11 1.96 8.14 -2.38 -0.02 1.94 16 10 C -0.09 -1.60 4.46 30.62 0.14 -1.47 16 11 C -0.13 -1.86 6.08 30.67 0.19 -1.68 16 12 C 0.10 1.73 6.34 86.36 0.55 2.28 16 13 N -0.60 -15.25 2.97 -818.90 -2.43 -17.69 16 14 C 0.54 19.12 7.72 87.66 0.68 19.80 16 15 O -0.56 -24.63 15.27 -3.03 -0.05 -24.68 16 16 C -0.13 -4.79 4.50 71.24 0.32 -4.47 16 17 S -0.15 -8.11 20.57 -56.49 -1.16 -9.27 16 18 C -0.54 -30.45 9.50 67.95 0.65 -29.80 16 19 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 20 C 0.01 0.74 5.49 84.86 0.47 1.21 16 21 N -0.91 -55.21 13.22 21.65 0.29 -54.93 16 22 Si 1.00 42.88 29.55 68.60 2.03 44.90 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 24 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 25 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 26 C 0.13 2.74 5.57 86.36 0.48 3.23 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.41 5.83 8.02 -92.71 -0.74 5.09 16 37 H 0.07 1.28 8.07 -2.39 -0.02 1.26 16 38 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 39 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.09 1.71 5.94 -2.38 -0.01 1.69 16 42 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.11 3.76 7.69 -2.39 -0.02 3.74 16 44 H 0.11 3.74 7.94 -2.39 -0.02 3.72 16 45 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 46 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.09 2.10 6.61 -2.39 -0.02 2.09 16 Total: -1.00 -76.44 393.19 1.90 -74.54 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.21 Total: 19.91 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 5.61 Total: -2.25 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -4.68 Total: -87.35 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -0.09 Total: -40.48 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: -8.11 SS G_CDS: -1.16 Total: -9.27 kcal Total: -76.44 1.90 -74.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050738637.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.767 kcal (2) G-P(sol) polarization free energy of solvation -76.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds