Wall clock time and date at job start Tue Mar 31 2020 15:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47147 * 2 1 4 4 C 1.52996 * 109.47384 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47282 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.46997 * 179.97438 * 5 4 3 7 7 C 1.34782 * 120.00049 * 179.97438 * 6 5 4 8 8 O 1.21652 * 119.99758 * 0.02562 * 7 6 5 9 9 C 1.47118 * 119.99987 * 179.97438 * 7 6 5 10 10 C 1.43204 * 120.00278 * 352.53036 * 9 7 6 11 11 N 7.67527 * 165.90169 * 8.89197 * 2 1 3 12 12 C 1.37858 * 119.99830 * 172.53111 * 9 7 6 13 13 C 1.46382 * 120.00024 * 348.97432 * 12 9 7 14 14 C 1.40304 * 120.11849 * 315.86307 * 13 12 9 15 15 C 1.36543 * 119.87156 * 179.71919 * 14 13 12 16 16 C 1.39273 * 120.12221 * 0.55429 * 15 14 13 17 17 O 1.35502 * 119.87406 * 179.69370 * 16 15 14 18 18 C 1.34748 * 116.99584 * 177.03282 * 17 16 15 19 19 H 1.07998 * 120.00408 * 5.00000 * 18 17 16 20 20 C 1.38776 * 119.99724 * 184.99509 * 18 17 16 21 21 N 1.31463 * 120.00201 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00031 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47210 * 89.99960 * 22 20 18 24 24 H 1.48496 * 109.47463 * 210.00418 * 22 20 18 25 25 H 1.48507 * 109.47150 * 330.00408 * 22 20 18 26 26 C 1.39278 * 120.24626 * 359.72072 * 16 15 14 27 27 C 1.36537 * 120.12740 * 359.97438 * 26 16 15 28 28 H 1.08996 * 109.47278 * 59.99706 * 1 2 3 29 29 H 1.09000 * 109.47336 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47141 * 299.99518 * 1 2 3 31 31 H 1.09004 * 109.46813 * 240.00147 * 2 1 3 32 32 H 1.08996 * 109.47278 * 120.00294 * 2 1 3 33 33 H 1.09004 * 109.47144 * 60.00350 * 3 2 1 34 34 H 1.09010 * 109.47249 * 300.00304 * 3 2 1 35 35 H 1.08996 * 109.47031 * 59.99516 * 4 3 2 36 36 H 1.09010 * 109.46798 * 300.00118 * 4 3 2 37 37 H 1.08996 * 109.47785 * 59.99608 * 5 4 3 38 38 H 1.09003 * 109.47027 * 299.99230 * 5 4 3 39 39 H 0.97006 * 120.00438 * 0.02562 * 6 5 4 40 40 H 1.08001 * 119.99910 * 169.24905 * 12 9 7 41 41 H 1.08002 * 120.06634 * 359.97438 * 14 13 12 42 42 H 1.08004 * 119.93622 * 180.27287 * 15 14 13 43 43 H 0.97003 * 120.00185 * 179.97438 * 21 20 18 44 44 H 1.08000 * 119.93453 * 179.97438 * 26 16 15 45 45 H 1.07998 * 120.06639 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8850 0.0000 6 7 5.5449 2.8850 0.0000 7 6 6.2188 4.0522 0.0000 8 8 5.6106 5.1057 0.0005 9 6 7.6900 4.0522 0.0006 10 6 8.4060 2.8226 0.1623 11 7 8.9741 1.8471 0.2890 12 6 8.3794 5.2359 -0.1546 13 6 7.6679 6.4496 -0.5588 14 6 6.7186 6.3986 -1.5907 15 6 6.0538 7.5327 -1.9598 16 6 6.3247 8.7407 -1.3219 17 8 5.6664 9.8643 -1.6964 18 6 5.9284 10.9876 -0.9999 19 1 6.6941 10.9846 -0.2382 20 6 5.2145 12.1486 -1.2614 21 7 4.2823 12.1523 -2.1883 22 14 5.5782 13.7061 -0.2964 23 1 6.6274 14.4892 -0.9974 24 1 4.3418 14.5213 -0.1877 25 1 6.0549 13.3461 1.0632 26 6 7.2701 8.7982 -0.3008 27 6 7.9365 7.6692 0.0807 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9329 0.9288 -0.8908 36 1 3.9337 0.9285 0.8892 37 1 3.7170 3.3984 0.8903 38 1 3.7163 3.3993 -0.8896 39 1 6.0300 2.0449 -0.0008 40 1 9.4451 5.2668 0.0177 41 1 6.5113 5.4634 -2.0894 42 1 5.3197 7.4937 -2.7511 43 1 3.7830 12.9637 -2.3709 44 1 7.4766 9.7377 0.1903 45 1 8.6691 7.7148 0.8728 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073117176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:11 Heat of formation + Delta-G solvation = -5.005752 kcal Electronic energy + Delta-G solvation = -26195.975467 eV Core-core repulsion = 22372.498108 eV Total energy + Delta-G solvation = -3823.477359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.98084 -38.98179 -37.10871 -36.58385 -36.40196 -34.43030 -33.21297 -32.36281 -31.11695 -30.41573 -28.65158 -26.39901 -25.62406 -23.71718 -22.25025 -21.98090 -21.53680 -21.11222 -20.17695 -18.55264 -18.08669 -17.17447 -16.26936 -16.02666 -15.33877 -15.18982 -14.88109 -14.65187 -14.44063 -14.13839 -14.03186 -13.76627 -13.60267 -13.46414 -13.32987 -13.27905 -12.98086 -12.80370 -12.64742 -12.43174 -12.34676 -11.94837 -11.83873 -11.55506 -11.40991 -11.32827 -11.13379 -11.03688 -10.99606 -10.83466 -10.73430 -10.52939 -9.67394 -9.57783 -9.27657 -9.04109 -8.85120 -8.15792 -7.04111 -6.63916 -4.16427 0.58607 2.33210 2.40906 2.61931 2.82572 3.05079 3.06456 3.10980 3.20916 3.72760 3.83861 4.01424 4.46054 4.53812 4.59610 4.70373 4.86977 4.92683 4.96379 5.04526 5.15455 5.25496 5.26749 5.38841 5.42447 5.53585 5.56443 5.63696 5.64380 5.74600 5.76978 5.87675 5.92839 5.99278 6.01499 6.07067 6.15865 6.40221 6.44895 6.59196 6.87219 6.95157 7.21196 7.26567 7.33569 7.48158 7.52568 7.74654 7.82932 8.38459 8.80971 9.50116 10.52674 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010633 B = 0.002607 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.663288 B =10737.802908 C =12935.473757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.132 4.132 5 C 0.121 3.879 6 N -0.737 5.737 7 C 0.568 3.432 8 O -0.501 6.501 9 C -0.202 4.202 10 C 0.264 3.736 11 N -0.444 5.444 12 C 0.122 3.878 13 C -0.215 4.215 14 C 0.024 3.976 15 C -0.203 4.203 16 C 0.179 3.821 17 O -0.159 6.159 18 C -0.390 4.390 19 H 0.098 0.902 20 C 0.041 3.959 21 N -0.850 5.850 22 Si 0.945 3.055 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.265 1.265 26 C -0.252 4.252 27 C -0.021 4.021 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.394 0.606 40 H 0.132 0.868 41 H 0.107 0.893 42 H 0.117 0.883 43 H 0.274 0.726 44 H 0.129 0.871 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.156 -17.420 4.055 17.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.170 4.170 5 C -0.003 4.003 6 N -0.389 5.389 7 C 0.355 3.645 8 O -0.376 6.376 9 C -0.210 4.210 10 C -0.049 4.049 11 N -0.122 5.122 12 C 0.098 3.902 13 C -0.217 4.217 14 C 0.005 3.995 15 C -0.223 4.223 16 C 0.122 3.878 17 O -0.059 6.059 18 C -0.466 4.466 19 H 0.116 0.884 20 C -0.165 4.165 21 N -0.482 5.482 22 Si 0.769 3.231 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.189 1.189 26 C -0.272 4.272 27 C -0.039 4.039 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.227 0.773 40 H 0.150 0.850 41 H 0.125 0.875 42 H 0.135 0.865 43 H 0.084 0.916 44 H 0.147 0.853 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.150 -17.895 3.956 18.328 hybrid contribution 0.179 0.609 0.549 0.839 sum 0.029 -17.286 4.505 17.864 Atomic orbital electron populations 1.21781 0.95810 1.01532 1.02014 1.21522 0.95954 0.96746 1.01959 1.21535 0.94180 0.97051 1.02836 1.21817 0.96459 0.96102 1.02614 1.21342 0.79362 0.96751 1.02827 1.45977 1.07324 1.08471 1.77161 1.17638 0.86189 0.83800 0.76910 1.91002 1.68587 1.29745 1.48240 1.17939 0.91968 0.88157 1.22887 1.25717 0.93507 0.92963 0.92670 1.81238 1.08260 1.10964 1.11722 1.22964 0.98111 0.89919 0.79175 1.18110 1.06643 0.91853 1.05056 1.20323 0.90023 0.95896 0.93280 1.19787 1.05873 0.90771 1.05826 1.19668 0.89845 0.87303 0.90976 1.83874 1.56143 1.14641 1.51267 1.21516 1.20909 0.85499 1.18639 0.88419 1.25414 0.95099 0.99071 0.96954 1.69997 1.20109 1.29255 1.28853 0.85649 0.78390 0.79652 0.79450 1.19641 1.20065 1.18916 1.20742 1.03402 0.99427 1.03600 1.20555 0.96206 0.90921 0.96232 0.92620 0.92882 0.92666 0.92054 0.92103 0.91508 0.91420 0.91389 0.91491 0.91333 0.91142 0.77264 0.84998 0.87540 0.86475 0.91571 0.85310 0.87096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.12 -0.81 5.93 -26.73 -0.16 -0.97 16 3 C -0.12 -0.86 5.21 -26.73 -0.14 -0.99 16 4 C -0.13 -1.01 5.33 -26.74 -0.14 -1.15 16 5 C 0.12 1.25 5.67 -4.04 -0.02 1.23 16 6 N -0.74 -8.38 5.51 -61.48 -0.34 -8.72 16 7 C 0.57 8.02 6.80 -12.66 -0.09 7.93 16 8 O -0.50 -8.92 12.36 5.23 0.06 -8.86 16 9 C -0.20 -2.56 5.74 -104.51 -0.60 -3.16 16 10 C 0.26 3.29 14.21 -22.48 -0.32 2.97 16 11 N -0.44 -6.13 18.54 41.83 0.78 -5.35 16 12 C 0.12 1.54 9.52 -36.45 -0.35 1.19 16 13 C -0.22 -3.50 4.56 -105.07 -0.48 -3.98 16 14 C 0.02 0.42 6.61 -39.42 -0.26 0.16 16 15 C -0.20 -4.22 9.93 -39.81 -0.40 -4.61 16 16 C 0.18 4.16 6.67 -38.81 -0.26 3.90 16 17 O -0.16 -4.34 9.74 1.04 0.01 -4.33 16 18 C -0.39 -10.35 9.48 30.93 0.29 -10.06 16 19 H 0.10 2.37 5.17 -52.49 -0.27 2.10 16 20 C 0.04 1.08 5.50 -17.51 -0.10 0.98 16 21 N -0.85 -23.81 13.67 55.49 0.76 -23.05 16 22 Si 0.94 19.46 29.55 -169.99 -5.02 14.44 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 26 C -0.25 -5.18 9.10 -39.81 -0.36 -5.54 16 27 C -0.02 -0.35 9.75 -39.42 -0.38 -0.73 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.39 3.88 7.38 -40.82 -0.30 3.58 16 40 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.11 1.71 7.09 -52.49 -0.37 1.33 16 42 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 43 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.13 2.61 5.59 -52.49 -0.29 2.32 16 45 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 387.90 15.07 5.85 5.85 Total: -1.00 -30.39 387.90 -7.59 -37.98 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.29 Total: 5.50 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -3.39 Total: -13.44 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 1.20 Total: -37.12 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.07 Total: -13.19 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.39 -7.59 -37.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073117176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.974 kcal (2) G-P(sol) polarization free energy of solvation -30.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds