Wall clock time and date at job start Tue Mar 31 2020 15:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47147 * 2 1 4 4 C 1.52996 * 109.47384 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47282 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.46997 * 179.97438 * 5 4 3 7 7 C 1.34782 * 120.00049 * 179.97438 * 6 5 4 8 8 O 1.21652 * 119.99758 * 0.02562 * 7 6 5 9 9 C 1.47118 * 119.99987 * 179.97438 * 7 6 5 10 10 C 1.43204 * 120.00278 * 352.53036 * 9 7 6 11 11 N 7.67527 * 165.90169 * 8.89197 * 2 1 3 12 12 C 1.37858 * 119.99830 * 172.53111 * 9 7 6 13 13 C 1.46382 * 120.00024 * 348.97432 * 12 9 7 14 14 C 1.40304 * 120.11849 * 315.86307 * 13 12 9 15 15 C 1.36543 * 119.87156 * 179.71919 * 14 13 12 16 16 C 1.39273 * 120.12221 * 0.55429 * 15 14 13 17 17 O 1.35502 * 119.87406 * 179.69370 * 16 15 14 18 18 C 1.34748 * 116.99584 * 177.03282 * 17 16 15 19 19 H 1.07998 * 120.00408 * 5.00000 * 18 17 16 20 20 C 1.38776 * 119.99724 * 184.99509 * 18 17 16 21 21 N 1.31463 * 120.00201 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00031 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47210 * 89.99960 * 22 20 18 24 24 H 1.48496 * 109.47463 * 210.00418 * 22 20 18 25 25 H 1.48507 * 109.47150 * 330.00408 * 22 20 18 26 26 C 1.39278 * 120.24626 * 359.72072 * 16 15 14 27 27 C 1.36537 * 120.12740 * 359.97438 * 26 16 15 28 28 H 1.08996 * 109.47278 * 59.99706 * 1 2 3 29 29 H 1.09000 * 109.47336 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47141 * 299.99518 * 1 2 3 31 31 H 1.09004 * 109.46813 * 240.00147 * 2 1 3 32 32 H 1.08996 * 109.47278 * 120.00294 * 2 1 3 33 33 H 1.09004 * 109.47144 * 60.00350 * 3 2 1 34 34 H 1.09010 * 109.47249 * 300.00304 * 3 2 1 35 35 H 1.08996 * 109.47031 * 59.99516 * 4 3 2 36 36 H 1.09010 * 109.46798 * 300.00118 * 4 3 2 37 37 H 1.08996 * 109.47785 * 59.99608 * 5 4 3 38 38 H 1.09003 * 109.47027 * 299.99230 * 5 4 3 39 39 H 0.97006 * 120.00438 * 0.02562 * 6 5 4 40 40 H 1.08001 * 119.99910 * 169.24905 * 12 9 7 41 41 H 1.08002 * 120.06634 * 359.97438 * 14 13 12 42 42 H 1.08004 * 119.93622 * 180.27287 * 15 14 13 43 43 H 0.97003 * 120.00185 * 179.97438 * 21 20 18 44 44 H 1.08000 * 119.93453 * 179.97438 * 26 16 15 45 45 H 1.07998 * 120.06639 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8850 0.0000 6 7 5.5449 2.8850 0.0000 7 6 6.2188 4.0522 0.0000 8 8 5.6106 5.1057 0.0005 9 6 7.6900 4.0522 0.0006 10 6 8.4060 2.8226 0.1623 11 7 8.9741 1.8471 0.2890 12 6 8.3794 5.2359 -0.1546 13 6 7.6679 6.4496 -0.5588 14 6 6.7186 6.3986 -1.5907 15 6 6.0538 7.5327 -1.9598 16 6 6.3247 8.7407 -1.3219 17 8 5.6664 9.8643 -1.6964 18 6 5.9284 10.9876 -0.9999 19 1 6.6941 10.9846 -0.2382 20 6 5.2145 12.1486 -1.2614 21 7 4.2823 12.1523 -2.1883 22 14 5.5782 13.7061 -0.2964 23 1 6.6274 14.4892 -0.9974 24 1 4.3418 14.5213 -0.1877 25 1 6.0549 13.3461 1.0632 26 6 7.2701 8.7982 -0.3008 27 6 7.9365 7.6692 0.0807 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9329 0.9288 -0.8908 36 1 3.9337 0.9285 0.8892 37 1 3.7170 3.3984 0.8903 38 1 3.7163 3.3993 -0.8896 39 1 6.0300 2.0449 -0.0008 40 1 9.4451 5.2668 0.0177 41 1 6.5113 5.4634 -2.0894 42 1 5.3197 7.4937 -2.7511 43 1 3.7830 12.9637 -2.3709 44 1 7.4766 9.7377 0.1903 45 1 8.6691 7.7148 0.8728 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073117176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:10 Heat of formation + Delta-G solvation = -22.650350 kcal Electronic energy + Delta-G solvation = -26196.740594 eV Core-core repulsion = 22372.498108 eV Total energy + Delta-G solvation = -3824.242486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.26989 -40.52279 -38.44042 -37.74692 -37.35098 -35.34856 -34.63881 -34.03533 -31.95561 -31.92332 -30.02730 -27.62748 -27.04759 -24.94321 -23.54154 -23.16768 -22.46854 -21.91547 -21.51660 -19.97311 -19.47321 -18.87820 -17.18287 -17.01578 -16.62104 -16.39265 -16.31774 -16.02537 -15.79484 -15.51716 -15.16895 -14.97033 -14.79280 -14.52281 -14.37043 -14.26748 -14.19782 -13.96996 -13.85499 -13.77017 -13.54376 -13.21509 -13.01933 -12.63844 -12.60575 -12.46643 -12.33254 -12.11060 -12.01486 -11.96785 -11.69084 -11.40942 -11.22058 -11.03816 -10.76227 -10.43925 -10.11079 -9.64487 -8.61660 -8.49061 -6.14402 -0.57444 0.79190 0.93739 1.37496 1.47416 1.54478 1.55274 1.69787 2.18125 2.20650 2.60452 2.81803 2.90685 3.22649 3.50712 3.78835 3.84164 3.98318 4.01581 4.13316 4.16536 4.17346 4.30449 4.41384 4.54286 4.59999 4.66442 4.70966 4.79975 4.82802 4.90319 4.98293 5.01564 5.05068 5.09383 5.17561 5.18514 5.29130 5.36773 5.42180 5.45929 5.49889 5.63363 5.72345 5.73753 6.02695 6.21425 6.41854 6.50010 6.95460 7.26263 7.75428 8.73607 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010633 B = 0.002607 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.663288 B =10737.802908 C =12935.473757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.118 4.118 4 C -0.121 4.121 5 C 0.119 3.881 6 N -0.722 5.722 7 C 0.561 3.439 8 O -0.542 6.542 9 C -0.174 4.174 10 C 0.284 3.716 11 N -0.452 5.452 12 C 0.131 3.869 13 C -0.188 4.188 14 C 0.026 3.974 15 C -0.220 4.220 16 C 0.142 3.858 17 O -0.222 6.222 18 C -0.414 4.414 19 H 0.109 0.891 20 C -0.022 4.022 21 N -0.916 5.916 22 Si 1.020 2.980 23 H -0.261 1.261 24 H -0.273 1.273 25 H -0.251 1.251 26 C -0.261 4.261 27 C -0.019 4.019 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.405 0.595 40 H 0.184 0.816 41 H 0.126 0.874 42 H 0.105 0.895 43 H 0.274 0.726 44 H 0.125 0.875 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.643 -20.894 6.165 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.156 4.156 4 C -0.159 4.159 5 C -0.004 4.004 6 N -0.374 5.374 7 C 0.348 3.652 8 O -0.421 6.421 9 C -0.181 4.181 10 C -0.030 4.030 11 N -0.129 5.129 12 C 0.108 3.892 13 C -0.189 4.189 14 C 0.008 3.992 15 C -0.240 4.240 16 C 0.090 3.910 17 O -0.127 6.127 18 C -0.490 4.490 19 H 0.126 0.874 20 C -0.220 4.220 21 N -0.553 5.553 22 Si 0.839 3.161 23 H -0.186 1.186 24 H -0.198 1.198 25 H -0.174 1.174 26 C -0.280 4.280 27 C -0.037 4.037 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.240 0.760 40 H 0.201 0.799 41 H 0.144 0.856 42 H 0.124 0.876 43 H 0.083 0.917 44 H 0.143 0.857 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.696 -21.489 6.088 22.496 hybrid contribution -0.513 0.954 0.002 1.083 sum 2.184 -20.534 6.089 21.529 Atomic orbital electron populations 1.21797 0.95780 1.01938 1.01808 1.21504 0.95998 0.96050 1.02390 1.21531 0.93967 0.97669 1.02444 1.21743 0.96521 0.94108 1.03506 1.21403 0.78717 0.98529 1.01758 1.45938 1.07855 1.08275 1.75351 1.17967 0.86871 0.83866 0.76463 1.91022 1.69474 1.31266 1.50304 1.17840 0.91126 0.88437 1.20719 1.25299 0.93005 0.92399 0.92263 1.81307 1.08672 1.11247 1.11653 1.23221 1.00174 0.87615 0.78240 1.18506 1.04303 0.93306 1.02794 1.20562 0.89650 0.95325 0.93684 1.19950 1.06706 0.91347 1.05971 1.20200 0.90879 0.87286 0.92670 1.83859 1.59248 1.15839 1.53734 1.21951 1.21647 0.86074 1.19324 0.87394 1.26666 0.94789 1.02518 0.98025 1.70147 1.22826 1.30263 1.32108 0.84568 0.78327 0.74910 0.78320 1.18597 1.19810 1.17409 1.20896 1.03274 1.00859 1.03020 1.20990 0.96194 0.89705 0.96795 0.92918 0.92183 0.92841 0.91643 0.91596 0.91889 0.91964 0.90455 0.90511 0.92402 0.92333 0.75958 0.79930 0.85602 0.87639 0.91677 0.85728 0.82474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.91 71.98 0.71 -1.06 16 2 C -0.12 -1.37 5.93 30.59 0.18 -1.19 16 3 C -0.12 -1.55 5.21 30.59 0.16 -1.39 16 4 C -0.12 -1.58 5.33 30.59 0.16 -1.41 16 5 C 0.12 2.29 5.67 86.38 0.49 2.78 16 6 N -0.72 -14.33 5.51 -466.66 -2.57 -16.90 16 7 C 0.56 14.10 6.80 86.57 0.59 14.69 16 8 O -0.54 -18.40 12.36 -4.20 -0.05 -18.45 16 9 C -0.17 -3.55 5.74 -19.79 -0.11 -3.66 16 10 C 0.28 5.57 14.21 88.33 1.26 6.82 16 11 N -0.45 -10.27 18.54 19.00 0.35 -9.92 16 12 C 0.13 2.53 9.52 24.30 0.23 2.77 16 13 C -0.19 -5.46 4.56 -20.16 -0.09 -5.55 16 14 C 0.03 0.90 6.61 22.38 0.15 1.05 16 15 C -0.22 -9.57 9.93 22.12 0.22 -9.35 16 16 C 0.14 6.99 6.67 22.77 0.15 7.14 16 17 O -0.22 -13.21 9.74 -19.19 -0.19 -13.40 16 18 C -0.41 -23.58 9.48 67.95 0.64 -22.94 16 19 H 0.11 5.55 5.17 -2.91 -0.02 5.53 16 20 C -0.02 -1.21 5.50 84.88 0.47 -0.74 16 21 N -0.92 -55.59 13.67 21.63 0.30 -55.29 16 22 Si 1.02 41.79 29.55 68.60 2.03 43.82 16 23 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 24 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 25 H -0.25 -9.47 7.11 99.48 0.71 -8.77 16 26 C -0.26 -10.81 9.10 22.12 0.20 -10.61 16 27 C -0.02 -0.59 9.75 22.37 0.22 -0.37 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.40 6.43 7.38 -92.70 -0.68 5.74 16 40 H 0.18 1.96 8.06 -2.91 -0.02 1.93 16 41 H 0.13 3.78 7.09 -2.91 -0.02 3.76 16 42 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 43 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 44 H 0.13 5.17 5.59 -2.91 -0.02 5.16 16 45 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -73.61 387.90 5.82 -67.79 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.33 Total: 25.39 kcal Atomic # 6 Polarization: -28.67 SS G_CDS: 5.63 Total: -23.04 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -1.92 Total: -82.11 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.24 Total: -31.85 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -73.61 5.82 -67.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073117176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.136 kcal (2) G-P(sol) polarization free energy of solvation -73.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds