Wall clock time and date at job start Tue Mar 31 2020 15:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.50691 * 109.47318 * 90.00113 * 3 2 1 5 5 H 1.08001 * 119.99896 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00413 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99924 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00255 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47271 * 60.00212 * 8 6 4 10 10 H 1.48499 * 109.47272 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47293 * 300.00056 * 8 6 4 12 12 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 13 13 O 1.21279 * 120.00410 * 179.97438 * 12 2 1 14 14 C 1.50703 * 119.99541 * 359.97438 * 12 2 1 15 15 H 1.08992 * 108.70416 * 300.70035 * 14 12 2 16 16 C 1.54562 * 108.75565 * 58.95940 * 14 12 2 17 17 S 1.84210 * 101.32744 * 144.06327 * 16 14 12 18 18 C 1.84074 * 93.91002 * 327.74209 * 17 16 14 19 19 N 1.45502 * 108.75198 * 182.44626 * 14 12 2 20 20 C 1.34773 * 122.43224 * 60.10280 * 19 14 12 21 21 O 1.21284 * 120.00153 * 0.02562 * 20 19 14 22 22 C 1.50698 * 120.00281 * 179.97438 * 20 19 14 23 23 C 1.53002 * 109.47100 * 180.02562 * 22 20 19 24 24 C 1.52998 * 109.47398 * 59.99985 * 23 22 20 25 25 C 1.53004 * 109.47107 * 179.97438 * 23 22 20 26 26 C 1.53001 * 109.47042 * 299.99725 * 23 22 20 27 27 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 28 28 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 29 29 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 30 30 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 31 31 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 32 32 H 0.96995 * 120.00442 * 179.97438 * 7 6 4 33 33 H 1.09002 * 111.05218 * 262.07730 * 16 14 12 34 34 H 1.08998 * 111.05128 * 26.00843 * 16 14 12 35 35 H 1.08997 * 110.77988 * 151.72505 * 18 17 16 36 36 H 1.09003 * 110.77944 * 274.95930 * 18 17 16 37 37 H 1.09001 * 109.47084 * 300.00048 * 22 20 19 38 38 H 1.08998 * 109.47268 * 60.00372 * 22 20 19 39 39 H 1.09008 * 109.46771 * 60.00102 * 24 23 22 40 40 H 1.08999 * 109.46977 * 179.97438 * 24 23 22 41 41 H 1.09001 * 109.47085 * 300.00508 * 24 23 22 42 42 H 1.09008 * 109.46503 * 59.99929 * 25 23 22 43 43 H 1.08998 * 109.47045 * 179.97438 * 25 23 22 44 44 H 1.08995 * 109.47187 * 300.00183 * 25 23 22 45 45 H 1.08999 * 109.46694 * 60.00560 * 26 23 22 46 46 H 1.08995 * 109.46890 * 179.97438 * 26 23 22 47 47 H 1.08995 * 109.47505 * 300.00456 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4207 5 1 2.0982 1.0958 2.2416 6 6 3.1270 2.8774 1.6727 7 7 3.5543 3.6176 0.6731 8 14 3.4390 3.4163 3.4339 9 1 4.2414 2.3810 4.1335 10 1 4.1814 4.7024 3.4339 11 1 2.1416 3.5942 4.1343 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 1 0.7545 -2.5116 0.8874 16 6 0.4828 -2.5250 -1.2542 17 16 0.5756 -4.3120 -1.6919 18 6 2.3008 -4.5019 -1.0789 19 7 2.3436 -3.5657 0.0577 20 6 3.2097 -3.7141 1.0795 21 8 3.2084 -2.9195 1.9958 22 6 4.1789 -4.8680 1.0843 23 6 5.0412 -4.8046 2.3465 24 6 4.1432 -4.8878 3.5825 25 6 6.0249 -5.9765 2.3517 26 6 5.8176 -3.4864 2.3680 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5139 29 1 -0.3633 -0.8900 0.5139 30 1 3.1499 1.1384 -0.5139 31 1 1.6084 2.0284 -0.5139 32 1 4.0311 4.4434 0.8503 33 1 -0.5395 -2.2334 -1.0132 34 1 0.8866 -1.9039 -2.0537 35 1 2.4829 -5.5240 -0.7469 36 1 3.0182 -4.2131 -1.8471 37 1 3.6258 -5.8072 1.0694 38 1 4.8185 -4.8090 0.2036 39 1 3.5901 -5.8270 3.5671 40 1 4.7577 -4.8431 4.4817 41 1 3.4421 -4.0532 3.5790 42 1 6.6647 -5.9176 1.4711 43 1 6.6395 -5.9311 3.2507 44 1 5.4715 -6.9154 2.3365 45 1 5.1165 -2.6518 2.3647 46 1 6.4316 -3.4410 3.2675 47 1 6.4574 -3.4270 1.4876 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078494141.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:19 Heat of formation + Delta-G solvation = -56.174505 kcal Electronic energy + Delta-G solvation = -27912.233915 eV Core-core repulsion = 24221.981664 eV Total energy + Delta-G solvation = -3690.252251 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.61980 -38.94785 -36.81485 -35.60000 -34.87609 -32.79318 -31.57086 -28.39999 -27.61173 -27.42872 -27.11512 -26.98152 -26.00981 -24.00221 -22.53145 -20.33886 -18.75330 -18.41659 -17.41452 -17.06904 -16.75768 -16.44535 -15.38666 -15.27649 -15.14851 -14.62774 -14.39066 -14.32765 -14.18521 -13.90068 -13.74231 -13.59681 -12.84715 -12.66035 -12.53452 -12.43793 -12.22178 -12.12161 -12.06677 -11.76965 -11.70555 -11.64942 -11.19375 -11.16742 -10.97586 -10.88320 -10.81302 -10.68153 -10.57399 -10.55449 -10.12573 -9.62904 -9.35904 -9.18672 -8.51284 -8.40317 -8.10792 -7.68067 -6.01864 -4.05722 1.39352 1.74095 2.59460 2.87607 3.25226 3.35426 3.39075 3.45178 3.89919 4.21067 4.48261 4.56968 4.66428 4.70365 4.72607 4.87892 4.97754 5.06556 5.19669 5.23015 5.33304 5.40600 5.46996 5.49040 5.52245 5.59099 5.64552 5.79971 5.83152 5.93265 6.00716 6.08687 6.15492 6.20107 6.25147 6.32676 6.59874 6.84158 7.01008 7.28012 7.41080 7.51275 7.94722 8.25145 8.31351 8.36928 8.90662 9.05353 9.59216 11.06313 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009965 B = 0.005063 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.092965 B = 5529.461485 C = 7751.087725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.599 5.599 3 C 0.249 3.751 4 C -0.523 4.523 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.502 3.498 13 O -0.516 6.516 14 C 0.115 3.885 15 H 0.106 0.894 16 C -0.060 4.060 17 S -0.274 6.274 18 C 0.158 3.842 19 N -0.603 5.603 20 C 0.533 3.467 21 O -0.491 6.491 22 C -0.125 4.125 23 C -0.051 4.051 24 C -0.153 4.153 25 C -0.140 4.140 26 C -0.155 4.155 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.042 0.958 31 H 0.033 0.967 32 H 0.263 0.737 33 H 0.130 0.870 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.043 0.957 40 H 0.050 0.950 41 H 0.084 0.916 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.052 0.948 45 H 0.091 0.909 46 H 0.048 0.952 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.437 -19.754 -3.389 20.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.332 5.332 3 C 0.130 3.870 4 C -0.562 4.562 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.203 1.203 12 C 0.285 3.715 13 O -0.391 6.391 14 C 0.005 3.995 15 H 0.124 0.876 16 C -0.209 4.209 17 S -0.048 6.048 18 C -0.076 4.076 19 N -0.341 5.341 20 C 0.321 3.679 21 O -0.364 6.364 22 C -0.165 4.165 23 C -0.051 4.051 24 C -0.210 4.210 25 C -0.197 4.197 26 C -0.212 4.212 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.148 0.852 34 H 0.125 0.875 35 H 0.133 0.867 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.103 0.897 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.110 0.890 46 H 0.067 0.933 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.457 -19.921 -3.416 20.698 hybrid contribution 0.876 1.128 1.281 1.919 sum -3.581 -18.793 -2.136 19.250 Atomic orbital electron populations 1.21805 0.81714 1.02814 1.00347 1.48086 1.05978 1.07587 1.71576 1.19277 0.92374 0.77713 0.97602 1.21384 1.36418 1.06105 0.92256 0.92460 1.24908 0.95318 0.96389 0.97379 1.69919 1.38536 1.14410 1.30764 0.86571 0.78409 0.77745 0.84812 1.20103 1.21218 1.20262 1.20204 0.88338 0.84638 0.78320 1.90675 1.13381 1.86365 1.48638 1.21210 0.90986 0.87766 0.99489 0.87633 1.24664 1.03794 0.93800 0.98604 1.88220 1.19307 1.14118 1.83139 1.24139 0.95094 0.97260 0.91122 1.48129 1.37702 1.26091 1.22169 1.20418 0.80005 0.86748 0.80758 1.90673 1.67558 1.43616 1.34551 1.21777 0.97270 0.96586 1.00846 1.20278 0.94853 0.96302 0.93673 1.22107 1.00124 1.02390 0.96366 1.21888 0.98762 0.97185 1.01909 1.22114 1.00545 0.97944 1.00582 0.93473 0.90386 0.92619 0.93988 0.94954 0.92730 0.85234 0.87493 0.86709 0.88624 0.89296 0.88936 0.93782 0.93082 0.89733 0.92729 0.92402 0.92911 0.89014 0.93318 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.16 8.85 59.85 0.53 1.69 16 2 N -0.60 -12.46 2.86 -182.95 -0.52 -12.98 16 3 C 0.25 6.52 5.16 -5.20 -0.03 6.49 16 4 C -0.52 -15.12 9.39 -34.45 -0.32 -15.45 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 7 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 8 Si 0.90 22.55 29.54 -169.99 -5.02 17.52 16 9 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.50 10.35 6.29 -10.98 -0.07 10.28 16 13 O -0.52 -12.94 14.31 -12.87 -0.18 -13.13 16 14 C 0.11 1.73 2.13 -68.80 -0.15 1.58 16 15 H 0.11 1.58 7.34 -51.93 -0.38 1.20 16 16 C -0.06 -0.68 5.43 37.98 0.21 -0.47 16 17 S -0.27 -2.92 23.43 -107.50 -2.52 -5.44 16 18 C 0.16 1.63 7.19 60.29 0.43 2.07 16 19 N -0.60 -8.55 2.74 -169.40 -0.46 -9.02 16 20 C 0.53 8.36 6.16 -10.99 -0.07 8.29 16 21 O -0.49 -9.82 10.10 -12.88 -0.13 -9.95 16 22 C -0.12 -1.44 3.55 -27.88 -0.10 -1.54 16 23 C -0.05 -0.62 0.77 -154.51 -0.12 -0.74 16 24 C -0.15 -1.96 8.17 37.16 0.30 -1.65 16 25 C -0.14 -1.34 8.47 37.16 0.31 -1.02 16 26 C -0.15 -2.38 8.18 37.16 0.30 -2.07 16 27 H 0.05 0.56 7.69 -51.93 -0.40 0.17 16 28 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 29 H 0.06 0.68 5.71 -51.93 -0.30 0.38 16 30 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 31 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.13 1.15 6.76 -51.93 -0.35 0.80 16 34 H 0.11 1.27 7.85 -51.93 -0.41 0.86 16 35 H 0.11 0.86 7.11 -51.93 -0.37 0.50 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.09 0.77 7.62 -51.93 -0.40 0.38 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.04 0.48 8.14 -51.92 -0.42 0.06 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 1.34 5.51 -51.93 -0.29 1.05 16 42 H 0.05 0.49 8.14 -51.92 -0.42 0.06 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.09 1.82 5.51 -51.93 -0.29 1.53 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 376.84 15.07 5.68 5.68 Total: -1.00 -35.54 376.84 -9.03 -44.56 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -7.75 Total: -0.17 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 1.14 Total: 9.15 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.25 Total: -48.23 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.31 Total: -23.08 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Atomic # 16 Polarization: -2.92 SS G_CDS: -2.52 Total: -5.44 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.54 -9.03 -44.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078494141.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.610 kcal (2) G-P(sol) polarization free energy of solvation -35.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds