Wall clock time and date at job start Tue Mar 31 2020 15:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.50691 * 109.47318 * 90.00113 * 3 2 1 5 5 H 1.08001 * 119.99896 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00413 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99924 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00255 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47271 * 60.00212 * 8 6 4 10 10 H 1.48499 * 109.47272 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47293 * 300.00056 * 8 6 4 12 12 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 13 13 O 1.21279 * 120.00410 * 179.97438 * 12 2 1 14 14 C 1.50703 * 119.99541 * 359.97438 * 12 2 1 15 15 H 1.08992 * 108.70416 * 300.70035 * 14 12 2 16 16 C 1.54562 * 108.75565 * 58.95940 * 14 12 2 17 17 S 1.84210 * 101.32744 * 144.06327 * 16 14 12 18 18 C 1.84074 * 93.91002 * 327.74209 * 17 16 14 19 19 N 1.45502 * 108.75198 * 182.44626 * 14 12 2 20 20 C 1.34773 * 122.43224 * 60.10280 * 19 14 12 21 21 O 1.21284 * 120.00153 * 0.02562 * 20 19 14 22 22 C 1.50698 * 120.00281 * 179.97438 * 20 19 14 23 23 C 1.53002 * 109.47100 * 180.02562 * 22 20 19 24 24 C 1.52998 * 109.47398 * 59.99985 * 23 22 20 25 25 C 1.53004 * 109.47107 * 179.97438 * 23 22 20 26 26 C 1.53001 * 109.47042 * 299.99725 * 23 22 20 27 27 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 28 28 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 29 29 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 30 30 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 31 31 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 32 32 H 0.96995 * 120.00442 * 179.97438 * 7 6 4 33 33 H 1.09002 * 111.05218 * 262.07730 * 16 14 12 34 34 H 1.08998 * 111.05128 * 26.00843 * 16 14 12 35 35 H 1.08997 * 110.77988 * 151.72505 * 18 17 16 36 36 H 1.09003 * 110.77944 * 274.95930 * 18 17 16 37 37 H 1.09001 * 109.47084 * 300.00048 * 22 20 19 38 38 H 1.08998 * 109.47268 * 60.00372 * 22 20 19 39 39 H 1.09008 * 109.46771 * 60.00102 * 24 23 22 40 40 H 1.08999 * 109.46977 * 179.97438 * 24 23 22 41 41 H 1.09001 * 109.47085 * 300.00508 * 24 23 22 42 42 H 1.09008 * 109.46503 * 59.99929 * 25 23 22 43 43 H 1.08998 * 109.47045 * 179.97438 * 25 23 22 44 44 H 1.08995 * 109.47187 * 300.00183 * 25 23 22 45 45 H 1.08999 * 109.46694 * 60.00560 * 26 23 22 46 46 H 1.08995 * 109.46890 * 179.97438 * 26 23 22 47 47 H 1.08995 * 109.47505 * 300.00456 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4207 5 1 2.0982 1.0958 2.2416 6 6 3.1270 2.8774 1.6727 7 7 3.5543 3.6176 0.6731 8 14 3.4390 3.4163 3.4339 9 1 4.2414 2.3810 4.1335 10 1 4.1814 4.7024 3.4339 11 1 2.1416 3.5942 4.1343 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 1 0.7545 -2.5116 0.8874 16 6 0.4828 -2.5250 -1.2542 17 16 0.5756 -4.3120 -1.6919 18 6 2.3008 -4.5019 -1.0789 19 7 2.3436 -3.5657 0.0577 20 6 3.2097 -3.7141 1.0795 21 8 3.2084 -2.9195 1.9958 22 6 4.1789 -4.8680 1.0843 23 6 5.0412 -4.8046 2.3465 24 6 4.1432 -4.8878 3.5825 25 6 6.0249 -5.9765 2.3517 26 6 5.8176 -3.4864 2.3680 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5139 29 1 -0.3633 -0.8900 0.5139 30 1 3.1499 1.1384 -0.5139 31 1 1.6084 2.0284 -0.5139 32 1 4.0311 4.4434 0.8503 33 1 -0.5395 -2.2334 -1.0132 34 1 0.8866 -1.9039 -2.0537 35 1 2.4829 -5.5240 -0.7469 36 1 3.0182 -4.2131 -1.8471 37 1 3.6258 -5.8072 1.0694 38 1 4.8185 -4.8090 0.2036 39 1 3.5901 -5.8270 3.5671 40 1 4.7577 -4.8431 4.4817 41 1 3.4421 -4.0532 3.5790 42 1 6.6647 -5.9176 1.4711 43 1 6.6395 -5.9311 3.2507 44 1 5.4715 -6.9154 2.3365 45 1 5.1165 -2.6518 2.3647 46 1 6.4316 -3.4410 3.2675 47 1 6.4574 -3.4270 1.4876 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078494141.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:18 Heat of formation + Delta-G solvation = -79.130913 kcal Electronic energy + Delta-G solvation = -27913.229380 eV Core-core repulsion = 24221.981664 eV Total energy + Delta-G solvation = -3691.247716 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.86240 -40.36237 -37.96664 -36.77731 -36.61169 -34.85512 -32.87458 -29.83489 -29.04160 -28.40152 -28.14104 -27.98913 -27.45797 -25.65050 -24.06479 -21.65379 -19.97674 -19.57499 -18.80650 -18.48688 -18.33926 -17.81543 -16.99887 -16.56093 -16.41378 -16.19305 -15.71044 -15.40040 -15.34958 -15.12281 -14.90440 -14.66789 -14.39895 -14.03052 -13.88103 -13.64945 -13.50492 -13.39985 -13.21272 -12.99328 -12.95075 -12.87109 -12.76581 -12.67167 -12.54650 -12.28176 -12.22956 -12.06891 -11.84325 -11.76246 -11.64213 -11.55378 -10.73572 -10.68085 -10.44343 -9.79526 -9.44942 -8.92425 -8.26527 -6.40035 0.55201 0.85218 1.29849 1.34831 1.41664 1.48518 1.71000 1.83032 2.30642 2.43967 3.02833 3.13607 3.50090 3.56945 3.74042 3.86084 3.88495 4.05783 4.20349 4.25433 4.32079 4.34212 4.45530 4.55602 4.59986 4.64756 4.65695 4.80844 4.84840 4.90630 4.91987 4.95493 5.05603 5.10787 5.16435 5.18681 5.23997 5.37950 5.51269 5.53029 5.62747 5.80043 6.03302 6.19094 6.64864 6.72687 7.20192 7.25871 7.43634 8.80025 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009965 B = 0.005063 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.092965 B = 5529.461485 C = 7751.087725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.607 5.607 3 C 0.266 3.734 4 C -0.540 4.540 5 H 0.043 0.957 6 C 0.012 3.988 7 N -0.925 5.925 8 Si 0.960 3.040 9 H -0.286 1.286 10 H -0.272 1.272 11 H -0.259 1.259 12 C 0.492 3.508 13 O -0.573 6.573 14 C 0.127 3.873 15 H 0.108 0.892 16 C -0.058 4.058 17 S -0.251 6.251 18 C 0.151 3.849 19 N -0.608 5.608 20 C 0.521 3.479 21 O -0.544 6.544 22 C -0.119 4.119 23 C -0.050 4.050 24 C -0.149 4.149 25 C -0.132 4.132 26 C -0.152 4.152 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.087 0.913 30 H -0.005 1.005 31 H 0.029 0.971 32 H 0.268 0.732 33 H 0.160 0.840 34 H 0.101 0.899 35 H 0.151 0.849 36 H 0.100 0.900 37 H 0.130 0.870 38 H 0.107 0.893 39 H 0.069 0.931 40 H 0.049 0.951 41 H 0.048 0.952 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.041 0.959 46 H 0.050 0.950 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.860 -22.757 -3.668 23.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.339 5.339 3 C 0.145 3.855 4 C -0.578 4.578 5 H 0.061 0.939 6 C -0.187 4.187 7 N -0.565 5.565 8 Si 0.785 3.215 9 H -0.212 1.212 10 H -0.197 1.197 11 H -0.183 1.183 12 C 0.277 3.723 13 O -0.452 6.452 14 C 0.017 3.983 15 H 0.126 0.874 16 C -0.206 4.206 17 S -0.025 6.025 18 C -0.082 4.082 19 N -0.344 5.344 20 C 0.310 3.690 21 O -0.421 6.421 22 C -0.158 4.158 23 C -0.050 4.050 24 C -0.206 4.206 25 C -0.190 4.190 26 C -0.209 4.209 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.013 0.987 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.178 0.822 34 H 0.120 0.880 35 H 0.169 0.831 36 H 0.118 0.882 37 H 0.148 0.852 38 H 0.125 0.875 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.060 0.940 46 H 0.069 0.931 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.946 -22.957 -3.735 24.007 hybrid contribution 1.328 2.068 1.326 2.793 sum -4.619 -20.889 -2.409 21.529 Atomic orbital electron populations 1.22143 0.77950 1.03911 1.03135 1.48078 1.08344 1.06064 1.71451 1.18688 0.90990 0.80250 0.95612 1.21611 1.36848 1.06273 0.93105 0.93887 1.25751 0.94900 0.96445 1.01624 1.70018 1.38929 1.14808 1.32765 0.85589 0.78916 0.77319 0.79716 1.21247 1.19704 1.18344 1.21273 0.88117 0.86293 0.76573 1.90636 1.16143 1.87470 1.50975 1.21140 0.90745 0.84860 1.01588 0.87420 1.24664 1.04371 0.95121 0.96493 1.88187 1.18971 1.12356 1.82943 1.24459 0.95389 0.98256 0.90065 1.48299 1.37165 1.26119 1.22849 1.21294 0.80268 0.87192 0.80200 1.90674 1.68964 1.45677 1.36764 1.21870 0.96680 0.96455 1.00829 1.20294 0.95210 0.95512 0.94005 1.22030 0.99699 1.02104 0.96739 1.21819 0.98237 0.96554 1.02345 1.22043 0.99731 0.98512 1.00623 0.89694 0.91431 0.89432 0.98696 0.95309 0.92349 0.82183 0.88029 0.83094 0.88188 0.85179 0.87532 0.91238 0.93167 0.93319 0.91900 0.92475 0.90399 0.94002 0.93133 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.04 8.85 127.77 1.13 3.17 16 2 N -0.61 -26.08 2.86 -851.12 -2.43 -28.51 16 3 C 0.27 14.71 5.16 85.63 0.44 15.15 16 4 C -0.54 -32.69 9.39 25.60 0.24 -32.45 16 5 H 0.04 2.66 7.81 -2.91 -0.02 2.64 16 6 C 0.01 0.72 5.46 84.65 0.46 1.18 16 7 N -0.93 -57.40 13.29 21.45 0.28 -57.11 16 8 Si 0.96 47.42 29.54 68.60 2.03 49.45 16 9 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 10 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 12 C 0.49 21.03 6.29 87.66 0.55 21.58 16 13 O -0.57 -30.72 14.31 14.60 0.21 -30.51 16 14 C 0.13 3.72 2.13 44.97 0.10 3.82 16 15 H 0.11 3.13 7.34 -2.39 -0.02 3.11 16 16 C -0.06 -1.17 5.43 72.51 0.39 -0.78 16 17 S -0.25 -4.50 23.43 -56.49 -1.32 -5.82 16 18 C 0.15 2.67 7.19 127.61 0.92 3.59 16 19 N -0.61 -16.60 2.74 -808.24 -2.21 -18.81 16 20 C 0.52 16.33 6.16 87.66 0.54 16.87 16 21 O -0.54 -23.01 10.10 14.58 0.15 -22.86 16 22 C -0.12 -2.49 3.55 29.85 0.11 -2.38 16 23 C -0.05 -1.17 0.77 -52.18 -0.04 -1.21 16 24 C -0.15 -3.72 8.17 71.98 0.59 -3.13 16 25 C -0.13 -2.12 8.47 71.98 0.61 -1.51 16 26 C -0.15 -4.89 8.18 71.98 0.59 -4.31 16 27 H 0.08 1.82 7.69 -2.39 -0.02 1.81 16 28 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 29 H 0.09 1.96 5.71 -2.38 -0.01 1.94 16 30 H -0.01 -0.33 7.42 -2.39 -0.02 -0.34 16 31 H 0.03 1.59 8.07 -2.38 -0.02 1.57 16 32 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 33 H 0.16 2.21 6.76 -2.39 -0.02 2.20 16 34 H 0.10 2.22 7.85 -2.39 -0.02 2.20 16 35 H 0.15 1.57 7.11 -2.39 -0.02 1.55 16 36 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.13 1.65 7.62 -2.39 -0.02 1.63 16 38 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.05 1.60 5.51 -2.39 -0.01 1.59 16 42 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 43 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.04 1.80 5.51 -2.39 -0.01 1.78 16 46 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -85.71 376.84 4.27 -81.43 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.95 Total: 13.17 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 6.63 Total: 19.58 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -4.36 Total: -104.43 kcal Atomic # 8 Polarization: -53.73 SS G_CDS: 0.36 Total: -53.37 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Atomic # 16 Polarization: -4.50 SS G_CDS: -1.32 Total: -5.82 kcal Total: -85.71 4.27 -81.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078494141.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.301 kcal (2) G-P(sol) polarization free energy of solvation -85.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds