Wall clock time and date at job start Tue Mar 31 2020 15:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46508 * 119.99851 * 2 1 4 4 C 1.50699 * 109.47042 * 270.00446 * 3 2 1 5 5 H 1.07998 * 120.00170 * 359.97438 * 4 3 2 6 6 C 1.37869 * 119.99903 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00161 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00279 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.46809 * 90.00008 * 8 6 4 10 10 H 1.48492 * 109.47250 * 210.00110 * 8 6 4 11 11 H 1.48502 * 109.46851 * 329.99941 * 8 6 4 12 12 C 1.34773 * 120.00460 * 180.02562 * 2 1 3 13 13 O 1.21282 * 120.00296 * 174.36380 * 12 2 1 14 14 C 1.50707 * 119.99800 * 354.63156 * 12 2 1 15 15 H 1.08996 * 109.46278 * 24.44439 * 14 12 2 16 16 C 1.55395 * 109.47153 * 264.45353 * 14 12 2 17 17 S 1.84245 * 99.76450 * 199.61234 * 16 14 12 18 18 C 1.83561 * 94.86045 * 33.14533 * 17 16 14 19 19 N 1.46129 * 109.46883 * 144.38991 * 14 12 2 20 20 C 1.34780 * 122.50216 * 330.77286 * 19 14 12 21 21 O 1.21280 * 119.99634 * 354.17844 * 20 19 14 22 22 C 1.50693 * 120.00090 * 174.17185 * 20 19 14 23 23 C 1.53002 * 109.47186 * 179.97438 * 22 20 19 24 24 C 1.53002 * 109.46976 * 60.00016 * 23 22 20 25 25 C 1.52998 * 109.47368 * 180.02562 * 23 22 20 26 26 C 1.52999 * 109.47198 * 300.00554 * 23 22 20 27 27 H 1.09003 * 109.46974 * 265.56876 * 1 2 3 28 28 H 1.08995 * 109.47217 * 25.56956 * 1 2 3 29 29 H 1.09008 * 109.47114 * 145.57213 * 1 2 3 30 30 H 1.08997 * 109.46687 * 30.00056 * 3 2 1 31 31 H 1.08995 * 109.46982 * 149.99810 * 3 2 1 32 32 H 0.96997 * 119.99940 * 179.97438 * 7 6 4 33 33 H 1.09006 * 111.34775 * 317.24748 * 16 14 12 34 34 H 1.09003 * 111.34810 * 81.92922 * 16 14 12 35 35 H 1.08994 * 110.33895 * 100.36655 * 18 17 16 36 36 H 1.08999 * 110.33690 * 222.61656 * 18 17 16 37 37 H 1.09001 * 109.47529 * 299.99880 * 22 20 19 38 38 H 1.09006 * 109.47380 * 60.00524 * 22 20 19 39 39 H 1.09010 * 109.46940 * 60.00306 * 24 23 22 40 40 H 1.08998 * 109.47441 * 179.97438 * 24 23 22 41 41 H 1.08999 * 109.47176 * 300.00742 * 24 23 22 42 42 H 1.09002 * 109.46634 * 60.00430 * 25 23 22 43 43 H 1.09004 * 109.47177 * 180.02562 * 25 23 22 44 44 H 1.08998 * 109.47088 * 300.00457 * 25 23 22 45 45 H 1.09001 * 109.47396 * 59.99424 * 26 23 22 46 46 H 1.09004 * 109.47150 * 179.97438 * 26 23 22 47 47 H 1.08997 * 109.47188 * 299.99354 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1258 2.8781 -1.6727 7 7 3.5523 3.6187 -0.6731 8 14 3.4376 3.4171 -3.4339 9 1 2.3074 4.2593 -3.9012 10 1 4.6975 4.2006 -3.4961 11 1 3.5559 2.2198 -4.3044 12 6 2.1389 -1.1671 -0.0005 13 8 3.3474 -1.1696 -0.1037 14 6 1.3904 -2.4695 0.1210 15 1 0.3671 -2.3343 -0.2291 16 6 1.3737 -2.9205 1.6080 17 16 0.9952 -4.7101 1.3875 18 6 1.9043 -4.8670 -0.1995 19 7 2.0515 -3.4888 -0.6911 20 6 2.7444 -3.1883 -1.8073 21 8 2.7494 -2.0517 -2.2304 22 6 3.5132 -4.2645 -2.5296 23 6 4.2044 -3.6627 -3.7547 24 6 5.1673 -2.5611 -3.3072 25 6 4.9844 -4.7555 -4.4884 26 6 3.1522 -3.0697 -4.6940 27 1 -0.3633 -0.0794 1.0246 28 1 -0.3633 0.9270 -0.4435 29 1 -0.3634 -0.8477 -0.5811 30 1 1.6084 2.0284 0.5138 31 1 3.1498 1.1385 0.5138 32 1 4.0291 4.4446 -0.8504 33 1 2.3467 -2.7756 2.0776 34 1 0.5872 -2.4139 2.1675 35 1 2.8832 -5.3162 -0.0325 36 1 1.3290 -5.4625 -0.9083 37 1 4.2625 -4.6872 -1.8603 38 1 2.8271 -5.0491 -2.8489 39 1 5.9170 -2.9836 -2.6380 40 1 5.6601 -2.1326 -4.1799 41 1 4.6113 -1.7827 -2.7847 42 1 4.2980 -5.5399 -4.8073 43 1 5.4772 -4.3266 -5.3610 44 1 5.7339 -5.1783 -3.8195 45 1 2.5962 -2.2912 -4.1715 46 1 3.6447 -2.6405 -5.5666 47 1 2.4663 -3.8544 -5.0129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078494142.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:21 Heat of formation + Delta-G solvation = -75.582442 kcal Electronic energy + Delta-G solvation = -28302.569653 eV Core-core repulsion = 24611.475811 eV Total energy + Delta-G solvation = -3691.093842 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.87935 -40.17597 -37.96613 -36.77798 -36.49879 -34.74890 -32.74698 -29.90220 -29.16067 -28.27136 -28.15416 -27.97037 -27.34673 -25.72905 -24.03369 -21.68186 -19.91763 -19.47232 -18.73860 -18.54096 -18.25700 -17.70005 -17.00864 -16.51732 -16.22462 -16.12356 -15.81196 -15.47390 -15.29903 -15.18661 -14.89234 -14.53432 -14.33277 -13.98436 -13.75982 -13.65108 -13.52353 -13.46778 -13.26430 -13.08186 -12.99516 -12.93951 -12.78290 -12.67219 -12.54167 -12.24536 -12.19304 -12.03209 -11.74950 -11.68732 -11.65416 -11.55655 -10.64977 -10.61973 -10.37375 -9.82155 -9.38406 -8.88476 -8.23090 -6.34385 0.52757 0.85261 1.28575 1.32366 1.42113 1.47060 1.76333 1.98257 2.32076 2.44485 3.05900 3.22398 3.52808 3.65676 3.75163 3.79424 3.89276 4.15466 4.20484 4.23020 4.26450 4.38332 4.49136 4.53868 4.60181 4.65205 4.68393 4.79883 4.83230 4.92054 4.93531 4.94225 5.04026 5.10267 5.16120 5.20431 5.23620 5.37479 5.53065 5.57106 5.64690 5.84736 6.08957 6.19835 6.70790 6.79261 7.24214 7.31642 7.52811 8.83636 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009902 B = 0.005741 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.141444 B = 4876.198468 C = 7141.008552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.607 5.607 3 C 0.269 3.731 4 C -0.524 4.524 5 H 0.041 0.959 6 C 0.009 3.991 7 N -0.929 5.929 8 Si 0.958 3.042 9 H -0.260 1.260 10 H -0.278 1.278 11 H -0.284 1.284 12 C 0.515 3.485 13 O -0.571 6.571 14 C 0.118 3.882 15 H 0.118 0.882 16 C -0.060 4.060 17 S -0.244 6.244 18 C 0.152 3.848 19 N -0.618 5.618 20 C 0.509 3.491 21 O -0.525 6.525 22 C -0.115 4.115 23 C -0.049 4.049 24 C -0.152 4.152 25 C -0.131 4.131 26 C -0.148 4.148 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.026 0.974 31 H -0.006 1.006 32 H 0.266 0.734 33 H 0.090 0.910 34 H 0.151 0.849 35 H 0.114 0.886 36 H 0.135 0.865 37 H 0.108 0.892 38 H 0.129 0.871 39 H 0.049 0.951 40 H 0.043 0.957 41 H 0.042 0.958 42 H 0.078 0.922 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.045 0.955 46 H 0.044 0.956 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.818 -22.893 -0.467 23.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.340 5.340 3 C 0.148 3.852 4 C -0.563 4.563 5 H 0.059 0.941 6 C -0.189 4.189 7 N -0.570 5.570 8 Si 0.783 3.217 9 H -0.185 1.185 10 H -0.203 1.203 11 H -0.209 1.209 12 C 0.301 3.699 13 O -0.450 6.450 14 C 0.009 3.991 15 H 0.135 0.865 16 C -0.209 4.209 17 S -0.017 6.017 18 C -0.080 4.080 19 N -0.357 5.357 20 C 0.298 3.702 21 O -0.400 6.400 22 C -0.154 4.154 23 C -0.050 4.050 24 C -0.209 4.209 25 C -0.188 4.188 26 C -0.206 4.206 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.044 0.956 31 H 0.012 0.988 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.169 0.831 35 H 0.132 0.868 36 H 0.153 0.847 37 H 0.127 0.873 38 H 0.147 0.853 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.728 -22.923 -0.064 23.890 hybrid contribution 1.200 2.007 -1.269 2.661 sum -5.528 -20.916 -1.333 21.675 Atomic orbital electron populations 1.21958 0.78288 1.03414 1.02804 1.47998 1.08042 1.06161 1.71751 1.18661 0.90776 0.80178 0.95612 1.21590 1.35972 1.05606 0.93098 0.94062 1.25720 0.95210 0.96598 1.01376 1.70030 1.39540 1.14856 1.32526 0.85559 0.78306 0.77833 0.79984 1.18505 1.20302 1.20941 1.20482 0.87661 0.85517 0.76263 1.90638 1.16663 1.87216 1.50508 1.21884 0.97936 0.86907 0.92339 0.86513 1.24604 1.07455 0.93761 0.95130 1.88045 1.71146 1.13254 1.29247 1.24222 1.04498 0.84320 0.94978 1.48378 1.55047 1.06286 1.25984 1.21375 0.78362 0.90714 0.79742 1.90804 1.60493 1.23786 1.64876 1.21819 1.00165 0.96391 0.97061 1.20288 0.95107 0.95380 0.94219 1.22045 0.98934 0.99542 1.00371 1.21807 1.00019 0.97139 0.99845 1.22022 0.98803 1.01224 0.98516 0.89851 0.91497 0.90378 0.95559 0.98760 0.92525 0.89100 0.83085 0.86809 0.84681 0.87349 0.85269 0.93232 0.93831 0.93880 0.90332 0.92798 0.91651 0.93641 0.93714 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.42 10.04 127.77 1.28 3.70 16 2 N -0.61 -26.91 2.86 -851.12 -2.43 -29.34 16 3 C 0.27 15.16 5.10 85.63 0.44 15.59 16 4 C -0.52 -32.36 9.39 25.60 0.24 -32.12 16 5 H 0.04 2.66 7.81 -2.91 -0.02 2.63 16 6 C 0.01 0.56 5.46 84.65 0.46 1.03 16 7 N -0.93 -58.46 13.29 21.44 0.28 -58.17 16 8 Si 0.96 48.55 29.54 68.60 2.03 50.58 16 9 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 11 H -0.28 -14.80 7.11 99.48 0.71 -14.09 16 12 C 0.51 22.09 4.98 87.66 0.44 22.53 16 13 O -0.57 -30.60 14.27 19.34 0.28 -30.33 16 14 C 0.12 3.43 2.82 45.14 0.13 3.56 16 15 H 0.12 2.98 5.72 -2.39 -0.01 2.96 16 16 C -0.06 -1.34 7.04 72.81 0.51 -0.83 16 17 S -0.24 -4.36 23.32 -56.49 -1.32 -5.68 16 18 C 0.15 2.46 6.86 127.66 0.88 3.34 16 19 N -0.62 -16.38 3.13 -806.69 -2.52 -18.91 16 20 C 0.51 16.19 6.31 87.65 0.55 16.74 16 21 O -0.53 -23.17 8.49 19.35 0.16 -23.01 16 22 C -0.11 -2.47 3.71 29.85 0.11 -2.36 16 23 C -0.05 -1.26 0.77 -52.18 -0.04 -1.30 16 24 C -0.15 -5.27 8.18 71.98 0.59 -4.68 16 25 C -0.13 -2.28 8.47 71.98 0.61 -1.67 16 26 C -0.15 -4.20 8.17 71.98 0.59 -3.62 16 27 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.07 2.23 8.04 -2.39 -0.02 2.21 16 29 H 0.08 2.05 6.13 -2.38 -0.01 2.03 16 30 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 31 H -0.01 -0.37 7.51 -2.39 -0.02 -0.39 16 32 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 33 H 0.09 2.35 8.10 -2.38 -0.02 2.33 16 34 H 0.15 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.11 1.49 7.98 -2.39 -0.02 1.47 16 36 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.11 1.97 8.06 -2.39 -0.02 1.96 16 38 H 0.13 1.70 8.11 -2.38 -0.02 1.68 16 39 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.04 2.00 5.51 -2.39 -0.01 1.99 16 42 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 44 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.04 1.69 5.51 -2.39 -0.01 1.68 16 46 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 47 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -86.19 379.80 4.21 -81.98 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.95 Total: 12.98 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: 6.78 Total: 19.90 kcal Atomic # 7 Polarization: -101.75 SS G_CDS: -4.67 Total: -106.42 kcal Atomic # 8 Polarization: -53.77 SS G_CDS: 0.44 Total: -53.33 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.03 Total: 50.58 kcal Atomic # 16 Polarization: -4.36 SS G_CDS: -1.32 Total: -5.68 kcal Total: -86.19 4.21 -81.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078494142.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.394 kcal (2) G-P(sol) polarization free energy of solvation -86.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds