Wall clock time and date at job start Tue Mar 31 2020 14:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.47043 * 2 1 4 4 N 1.30172 * 126.80304 * 270.02563 * 3 2 1 5 5 O 1.20920 * 111.60531 * 179.97438 * 4 3 2 6 6 C 1.34035 * 111.57087 * 359.75944 * 5 4 3 7 7 C 1.50696 * 126.78361 * 180.28543 * 6 5 4 8 8 C 1.52997 * 109.47433 * 270.11428 * 7 6 5 9 9 C 1.35454 * 106.44317 * 0.37854 * 6 5 4 10 10 C 1.50700 * 128.00911 * 179.90912 * 9 6 5 11 11 C 1.50697 * 109.47285 * 269.68237 * 10 9 6 12 12 O 1.21285 * 120.00263 * 0.02562 * 11 10 9 13 13 N 1.34784 * 120.00155 * 179.97438 * 11 10 9 14 14 C 1.39240 * 120.00003 * 184.03416 * 13 11 10 15 15 C 1.39473 * 119.83330 * 324.50131 * 14 13 11 16 16 C 1.36373 * 120.16985 * 179.71895 * 15 14 13 17 17 C 1.40870 * 119.82617 * 0.57481 * 16 15 14 18 18 C 1.41150 * 120.16468 * 179.67480 * 17 16 15 19 19 H 1.07997 * 120.00243 * 214.80183 * 18 17 16 20 20 C 1.39904 * 119.99824 * 34.80574 * 18 17 16 21 21 N 1.30871 * 120.00283 * 355.55388 * 20 18 17 22 22 Si 1.86805 * 119.99785 * 175.55931 * 20 18 17 23 23 H 1.48499 * 109.47154 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47299 * 119.99991 * 22 20 18 25 25 H 1.48503 * 109.47109 * 239.99506 * 22 20 18 26 26 C 1.40868 * 119.67222 * 359.69893 * 17 16 15 27 27 C 1.36374 * 119.82724 * 359.97438 * 26 17 16 28 28 H 1.08999 * 109.46726 * 60.00426 * 1 2 3 29 29 H 1.08999 * 109.47028 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47171 * 299.99833 * 1 2 3 31 31 H 1.08996 * 109.47827 * 239.99862 * 2 1 3 32 32 H 1.08999 * 109.46726 * 119.99574 * 2 1 3 33 33 H 1.09003 * 109.46986 * 30.11675 * 7 6 5 34 34 H 1.09007 * 109.47117 * 150.10874 * 7 6 5 35 35 H 1.08998 * 109.47152 * 59.99652 * 8 7 6 36 36 H 1.09003 * 109.47128 * 179.97438 * 8 7 6 37 37 H 1.08997 * 109.47050 * 299.99392 * 8 7 6 38 38 H 1.08998 * 109.47368 * 149.68336 * 10 9 6 39 39 H 1.09004 * 109.46900 * 29.68121 * 10 9 6 40 40 H 0.96993 * 119.99480 * 4.30767 * 13 11 10 41 41 H 1.08003 * 119.91540 * 0.02562 * 15 14 13 42 42 H 1.07997 * 120.09043 * 180.25198 * 16 15 14 43 43 H 0.97000 * 120.00302 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.09073 * 179.97438 * 26 17 16 45 45 H 1.07998 * 119.91849 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2918 2.1562 -1.0423 5 8 2.6805 3.2565 -0.7253 6 6 2.7253 3.3985 0.6068 7 6 3.1509 4.6264 1.3695 8 6 4.6575 4.5684 1.6300 9 6 2.3144 2.2195 1.1320 10 6 2.1824 1.8473 2.5864 11 6 3.4779 1.2494 3.0715 12 8 4.4162 1.1371 2.3113 13 7 3.5942 0.8405 4.3505 14 6 4.8157 0.3661 4.8215 15 6 5.6461 -0.3705 3.9771 16 6 6.8464 -0.8335 4.4294 17 6 7.2414 -0.5764 5.7569 18 6 8.4791 -1.0581 6.2346 19 1 8.5736 -1.3795 7.2613 20 6 9.5836 -1.1190 5.3781 21 7 9.4484 -0.8123 4.1130 22 14 11.2514 -1.6385 6.0401 23 1 11.1388 -1.9298 7.4919 24 1 11.7108 -2.8560 5.3246 25 1 12.2307 -0.5420 5.8301 26 6 6.3947 0.1635 6.6055 27 6 5.2003 0.6257 6.1368 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8935 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.9173 5.5164 0.7851 34 1 2.6190 4.6662 2.3202 35 1 5.1893 4.5286 0.6794 36 1 4.9654 5.4568 2.1814 37 1 4.8911 3.6786 2.2146 38 1 1.3799 1.1191 2.7037 39 1 1.9526 2.7387 3.1701 40 1 2.8260 0.8729 4.9417 41 1 5.3399 -0.5706 2.9609 42 1 7.4902 -1.4004 3.7732 43 1 10.2141 -0.8549 3.5190 44 1 6.6906 0.3643 7.6246 45 1 4.5502 1.1934 6.7860 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087004646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:01 Heat of formation + Delta-G solvation = 27.151795 kcal Electronic energy + Delta-G solvation = -27618.050479 eV Core-core repulsion = 23795.967576 eV Total energy + Delta-G solvation = -3822.082903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.86229 -39.70354 -37.38161 -35.78524 -34.92960 -34.39629 -32.93839 -31.95577 -30.71639 -29.57753 -29.26791 -28.14297 -24.94833 -24.66114 -23.68560 -22.20702 -21.35156 -20.79238 -19.87018 -19.43413 -17.57714 -17.31353 -17.13296 -16.68633 -16.20791 -15.49555 -15.12153 -14.88037 -14.38653 -14.25770 -13.97558 -13.85589 -13.54154 -13.16916 -13.08142 -12.86963 -12.72166 -12.54749 -12.24960 -12.07214 -11.86380 -11.74354 -11.52518 -11.47479 -11.40920 -11.24155 -11.14153 -10.90581 -10.74726 -10.51702 -9.97465 -9.90590 -9.83541 -9.50292 -9.17281 -8.96493 -8.73609 -7.53986 -6.90712 -6.60338 -4.34462 1.51266 2.21855 2.55631 2.98176 3.07893 3.10221 3.11459 3.15081 3.32529 3.77413 3.98242 4.14509 4.36774 4.68421 4.71358 4.79247 4.93649 5.08509 5.11128 5.12198 5.19005 5.26459 5.29481 5.39610 5.61122 5.65903 5.68194 5.73524 5.79081 5.89613 5.94480 6.00344 6.10909 6.15205 6.33247 6.36788 6.77590 6.98038 7.03152 7.19013 7.28322 7.62125 7.66063 7.96353 8.08465 8.17658 8.32465 8.34628 8.65983 8.75000 8.92612 9.00203 10.30437 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016114 B = 0.002868 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.245170 B = 9761.463940 C = 9943.860936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.048 4.048 3 C 0.039 3.961 4 N -0.369 5.369 5 O 0.095 5.905 6 C -0.015 4.015 7 C -0.039 4.039 8 C -0.153 4.153 9 C -0.175 4.175 10 C -0.062 4.062 11 C 0.497 3.503 12 O -0.515 6.515 13 N -0.654 5.654 14 C 0.005 3.995 15 C -0.093 4.093 16 C -0.144 4.144 17 C 0.100 3.900 18 C -0.463 4.463 19 H 0.076 0.924 20 C 0.069 3.931 21 N -0.807 5.807 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.275 1.275 26 C -0.204 4.204 27 C -0.113 4.113 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.394 0.606 41 H 0.106 0.894 42 H 0.130 0.870 43 H 0.278 0.722 44 H 0.096 0.904 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.947 6.928 -3.446 17.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 C -0.120 4.120 4 N -0.074 5.074 5 O 0.031 5.969 6 C -0.079 4.079 7 C -0.078 4.078 8 C -0.211 4.211 9 C -0.179 4.179 10 C -0.103 4.103 11 C 0.283 3.717 12 O -0.390 6.390 13 N -0.298 5.298 14 C -0.087 4.087 15 C -0.113 4.113 16 C -0.164 4.164 17 C 0.098 3.902 18 C -0.494 4.494 19 H 0.094 0.906 20 C -0.146 4.146 21 N -0.434 5.434 22 Si 0.739 3.261 23 H -0.186 1.186 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.224 4.224 27 C -0.133 4.133 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.227 0.773 41 H 0.124 0.876 42 H 0.147 0.853 43 H 0.089 0.911 44 H 0.114 0.886 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.189 6.695 -5.565 17.507 hybrid contribution 0.477 -0.159 1.318 1.411 sum -14.711 6.536 -4.247 16.649 Atomic orbital electron populations 1.21718 0.94054 1.02221 1.02207 1.19932 0.96043 0.88481 1.04125 1.23281 1.01585 0.98788 0.88388 1.73779 1.16892 0.92860 1.23909 1.84765 1.62818 1.26856 1.22421 1.24184 1.01117 0.98865 0.83743 1.20111 0.98077 0.91454 0.98122 1.21800 0.93089 1.03348 1.02840 1.20170 1.08353 0.93477 0.95917 1.19900 0.97280 1.02564 0.90521 1.20384 0.89488 0.79236 0.82585 1.90745 1.39921 1.54000 1.54295 1.42980 1.11996 1.63229 1.11575 1.17253 0.88852 1.07869 0.94710 1.20624 0.95353 0.97139 0.98178 1.21303 0.94698 1.02746 0.97658 1.17727 0.91776 0.88976 0.91745 1.19519 0.93961 1.38140 0.97752 0.90602 1.25894 1.01304 0.93016 0.94432 1.69794 1.32188 1.37097 1.04295 0.86168 0.81175 0.78738 0.80002 1.18610 1.19981 1.19995 1.20688 0.96572 1.05250 0.99935 1.20065 0.97222 1.02006 0.94040 0.92527 0.91648 0.92403 0.90054 0.89576 0.89656 0.88955 0.92156 0.91540 0.90961 0.87990 0.87975 0.77256 0.87632 0.85251 0.91128 0.88574 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.90 37.16 0.37 -0.91 16 2 C -0.05 -0.56 6.44 -27.88 -0.18 -0.74 16 3 C 0.04 0.55 6.58 -82.10 -0.54 0.01 16 4 N -0.37 -5.78 12.07 33.42 0.40 -5.37 16 5 O 0.10 1.41 11.20 17.19 0.19 1.60 16 6 C -0.02 -0.20 6.74 -35.30 -0.24 -0.44 16 7 C -0.04 -0.39 6.35 -27.89 -0.18 -0.57 16 8 C -0.15 -1.84 9.89 37.16 0.37 -1.48 16 9 C -0.17 -2.34 4.82 -104.42 -0.50 -2.84 16 10 C -0.06 -0.70 6.03 -29.04 -0.18 -0.87 16 11 C 0.50 8.04 7.65 -10.98 -0.08 7.96 16 12 O -0.51 -10.85 12.92 5.55 0.07 -10.78 16 13 N -0.65 -10.52 5.30 -9.74 -0.05 -10.57 16 14 C 0.01 0.11 6.30 -83.57 -0.53 -0.41 16 15 C -0.09 -2.27 8.61 -39.79 -0.34 -2.61 16 16 C -0.14 -3.83 8.62 -39.26 -0.34 -4.17 16 17 C 0.10 2.66 5.55 -106.80 -0.59 2.06 16 18 C -0.46 -12.28 9.02 -37.85 -0.34 -12.62 16 19 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 20 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 21 N -0.81 -21.53 10.60 55.55 0.59 -20.94 16 22 Si 0.91 19.09 29.56 -169.99 -5.03 14.06 16 23 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 26 C -0.20 -4.84 9.74 -39.26 -0.38 -5.22 16 27 C -0.11 -2.38 9.90 -39.79 -0.39 -2.77 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.73 7.44 -51.93 -0.39 0.35 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.12 7.58 -51.93 -0.39 0.73 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.10 0.86 7.44 -51.93 -0.39 0.47 16 40 H 0.39 4.68 8.82 -40.82 -0.36 4.32 16 41 H 0.11 2.61 6.25 -52.48 -0.33 2.29 16 42 H 0.13 3.64 6.13 -52.49 -0.32 3.31 16 43 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 44 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 45 H 0.09 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 379.72 15.07 5.72 5.72 Total: -1.00 -32.18 379.72 -8.64 -40.83 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -6.37 Total: 9.41 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -4.17 Total: -23.96 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.94 Total: -36.89 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.26 Total: -9.18 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.18 -8.64 -40.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087004646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.977 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds