Wall clock time and date at job start Tue Mar 31 2020 14:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.47043 * 2 1 4 4 N 1.30172 * 126.80304 * 270.02563 * 3 2 1 5 5 O 1.20920 * 111.60531 * 179.97438 * 4 3 2 6 6 C 1.34035 * 111.57087 * 359.75944 * 5 4 3 7 7 C 1.50696 * 126.78361 * 180.28543 * 6 5 4 8 8 C 1.52997 * 109.47433 * 270.11428 * 7 6 5 9 9 C 1.35454 * 106.44317 * 0.37854 * 6 5 4 10 10 C 1.50700 * 128.00911 * 179.90912 * 9 6 5 11 11 C 1.50697 * 109.47285 * 269.68237 * 10 9 6 12 12 O 1.21285 * 120.00263 * 0.02562 * 11 10 9 13 13 N 1.34784 * 120.00155 * 179.97438 * 11 10 9 14 14 C 1.39240 * 120.00003 * 184.03416 * 13 11 10 15 15 C 1.39473 * 119.83330 * 324.50131 * 14 13 11 16 16 C 1.36373 * 120.16985 * 179.71895 * 15 14 13 17 17 C 1.40870 * 119.82617 * 0.57481 * 16 15 14 18 18 C 1.41150 * 120.16468 * 179.67480 * 17 16 15 19 19 H 1.07997 * 120.00243 * 214.80183 * 18 17 16 20 20 C 1.39904 * 119.99824 * 34.80574 * 18 17 16 21 21 N 1.30871 * 120.00283 * 355.55388 * 20 18 17 22 22 Si 1.86805 * 119.99785 * 175.55931 * 20 18 17 23 23 H 1.48499 * 109.47154 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47299 * 119.99991 * 22 20 18 25 25 H 1.48503 * 109.47109 * 239.99506 * 22 20 18 26 26 C 1.40868 * 119.67222 * 359.69893 * 17 16 15 27 27 C 1.36374 * 119.82724 * 359.97438 * 26 17 16 28 28 H 1.08999 * 109.46726 * 60.00426 * 1 2 3 29 29 H 1.08999 * 109.47028 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47171 * 299.99833 * 1 2 3 31 31 H 1.08996 * 109.47827 * 239.99862 * 2 1 3 32 32 H 1.08999 * 109.46726 * 119.99574 * 2 1 3 33 33 H 1.09003 * 109.46986 * 30.11675 * 7 6 5 34 34 H 1.09007 * 109.47117 * 150.10874 * 7 6 5 35 35 H 1.08998 * 109.47152 * 59.99652 * 8 7 6 36 36 H 1.09003 * 109.47128 * 179.97438 * 8 7 6 37 37 H 1.08997 * 109.47050 * 299.99392 * 8 7 6 38 38 H 1.08998 * 109.47368 * 149.68336 * 10 9 6 39 39 H 1.09004 * 109.46900 * 29.68121 * 10 9 6 40 40 H 0.96993 * 119.99480 * 4.30767 * 13 11 10 41 41 H 1.08003 * 119.91540 * 0.02562 * 15 14 13 42 42 H 1.07997 * 120.09043 * 180.25198 * 16 15 14 43 43 H 0.97000 * 120.00302 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.09073 * 179.97438 * 26 17 16 45 45 H 1.07998 * 119.91849 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2918 2.1562 -1.0423 5 8 2.6805 3.2565 -0.7253 6 6 2.7253 3.3985 0.6068 7 6 3.1509 4.6264 1.3695 8 6 4.6575 4.5684 1.6300 9 6 2.3144 2.2195 1.1320 10 6 2.1824 1.8473 2.5864 11 6 3.4779 1.2494 3.0715 12 8 4.4162 1.1371 2.3113 13 7 3.5942 0.8405 4.3505 14 6 4.8157 0.3661 4.8215 15 6 5.6461 -0.3705 3.9771 16 6 6.8464 -0.8335 4.4294 17 6 7.2414 -0.5764 5.7569 18 6 8.4791 -1.0581 6.2346 19 1 8.5736 -1.3795 7.2613 20 6 9.5836 -1.1190 5.3781 21 7 9.4484 -0.8123 4.1130 22 14 11.2514 -1.6385 6.0401 23 1 11.1388 -1.9298 7.4919 24 1 11.7108 -2.8560 5.3246 25 1 12.2307 -0.5420 5.8301 26 6 6.3947 0.1635 6.6055 27 6 5.2003 0.6257 6.1368 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8935 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.9173 5.5164 0.7851 34 1 2.6190 4.6662 2.3202 35 1 5.1893 4.5286 0.6794 36 1 4.9654 5.4568 2.1814 37 1 4.8911 3.6786 2.2146 38 1 1.3799 1.1191 2.7037 39 1 1.9526 2.7387 3.1701 40 1 2.8260 0.8729 4.9417 41 1 5.3399 -0.5706 2.9609 42 1 7.4902 -1.4004 3.7732 43 1 10.2141 -0.8549 3.5190 44 1 6.6906 0.3643 7.6246 45 1 4.5502 1.1934 6.7860 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087004646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:00 Heat of formation + Delta-G solvation = 8.694066 kcal Electronic energy + Delta-G solvation = -27618.850866 eV Core-core repulsion = 23795.967576 eV Total energy + Delta-G solvation = -3822.883290 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -45.91750 -41.16081 -39.09583 -36.85435 -36.10544 -35.79935 -34.66911 -32.90052 -31.79142 -31.38408 -30.87198 -29.41914 -26.69701 -25.56529 -24.63090 -23.56213 -23.07942 -22.29951 -21.11109 -20.62934 -19.22107 -18.70795 -18.43153 -17.87358 -17.62364 -16.99350 -16.47226 -15.95081 -15.77333 -15.45468 -15.12857 -15.09546 -14.84658 -14.53754 -14.43800 -14.07259 -13.93748 -13.77792 -13.65591 -13.43657 -13.29306 -13.15901 -12.86864 -12.68149 -12.62504 -12.38717 -12.31494 -12.30769 -12.07969 -11.74485 -11.66820 -11.65559 -11.22061 -10.94616 -10.71663 -10.44715 -10.09346 -9.42396 -8.71393 -8.49125 -6.31944 0.48926 0.83913 1.15516 1.17442 1.37962 1.43578 1.53759 1.85999 2.17270 2.23115 2.50036 2.83198 3.17324 3.44090 3.70556 3.74151 3.89407 4.05889 4.12510 4.24967 4.29665 4.32887 4.41467 4.45153 4.47893 4.50718 4.57621 4.74391 4.86127 4.93334 4.96223 5.01410 5.04872 5.07841 5.13871 5.14872 5.21625 5.30161 5.34622 5.37020 5.46505 5.73388 5.90621 6.11120 6.17331 6.38399 6.73128 6.79262 6.97510 7.04770 7.30904 7.49716 8.43491 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016114 B = 0.002868 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.245170 B = 9761.463940 C = 9943.860936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.050 4.050 3 C 0.028 3.972 4 N -0.401 5.401 5 O 0.079 5.921 6 C -0.017 4.017 7 C -0.036 4.036 8 C -0.150 4.150 9 C -0.190 4.190 10 C -0.049 4.049 11 C 0.498 3.502 12 O -0.568 6.568 13 N -0.643 5.643 14 C 0.028 3.972 15 C -0.109 4.109 16 C -0.170 4.170 17 C 0.065 3.935 18 C -0.497 4.497 19 H 0.079 0.921 20 C 0.022 3.978 21 N -0.849 5.849 22 Si 0.989 3.011 23 H -0.253 1.253 24 H -0.269 1.269 25 H -0.270 1.270 26 C -0.209 4.209 27 C -0.106 4.106 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.123 0.877 35 H 0.043 0.957 36 H 0.089 0.911 37 H 0.033 0.967 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.421 0.579 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.280 0.720 44 H 0.112 0.888 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.538 8.551 -1.282 20.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.088 4.088 3 C -0.131 4.131 4 N -0.109 5.109 5 O 0.018 5.982 6 C -0.081 4.081 7 C -0.074 4.074 8 C -0.207 4.207 9 C -0.194 4.194 10 C -0.088 4.088 11 C 0.286 3.714 12 O -0.447 6.447 13 N -0.289 5.289 14 C -0.066 4.066 15 C -0.129 4.129 16 C -0.190 4.190 17 C 0.062 3.938 18 C -0.528 4.528 19 H 0.097 0.903 20 C -0.189 4.189 21 N -0.477 5.477 22 Si 0.810 3.190 23 H -0.176 1.176 24 H -0.194 1.194 25 H -0.195 1.195 26 C -0.229 4.229 27 C -0.126 4.126 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.130 0.870 34 H 0.141 0.859 35 H 0.062 0.938 36 H 0.108 0.892 37 H 0.052 0.948 38 H 0.155 0.845 39 H 0.162 0.838 40 H 0.259 0.741 41 H 0.111 0.889 42 H 0.117 0.883 43 H 0.090 0.910 44 H 0.130 0.870 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.844 8.339 -3.374 19.984 hybrid contribution 1.125 -0.594 0.574 1.395 sum -16.720 7.746 -2.800 18.638 Atomic orbital electron populations 1.21676 0.91592 1.03490 1.02564 1.20047 0.98118 0.87083 1.03585 1.23812 1.00907 0.99682 0.88663 1.73765 1.18493 0.93567 1.25094 1.84721 1.63145 1.26749 1.23615 1.24868 0.99898 1.00103 0.83206 1.20313 0.96414 0.91090 0.99548 1.21744 0.94880 1.02511 1.01594 1.20496 1.08725 0.93381 0.96828 1.19980 0.94723 1.04848 0.89272 1.21304 0.90573 0.77819 0.81658 1.90753 1.42389 1.55859 1.55658 1.42867 1.11081 1.62652 1.12311 1.17294 0.89885 1.05108 0.94294 1.20623 0.95614 0.98397 0.98257 1.21143 0.95594 1.04226 0.98024 1.18043 0.92897 0.90631 0.92193 1.19792 0.94880 1.39897 0.98213 0.90301 1.26826 1.05089 0.92583 0.94420 1.69927 1.33298 1.38808 1.05671 0.85057 0.76000 0.78346 0.79626 1.17595 1.19427 1.19523 1.20968 0.97137 1.04510 1.00291 1.20454 0.96789 1.01081 0.94272 0.93233 0.89921 0.90932 0.91092 0.89628 0.87046 0.85859 0.93819 0.89172 0.94801 0.84500 0.83796 0.74058 0.88945 0.88264 0.90953 0.87024 0.84232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.90 71.98 0.71 -1.41 16 2 C -0.05 -1.13 6.44 29.85 0.19 -0.94 16 3 C 0.03 0.79 6.58 43.58 0.29 1.08 16 4 N -0.40 -12.70 12.07 -49.56 -0.60 -13.30 16 5 O 0.08 2.33 11.20 71.68 0.80 3.13 16 6 C -0.02 -0.42 6.74 25.04 0.17 -0.25 16 7 C -0.04 -0.61 6.35 29.85 0.19 -0.42 16 8 C -0.15 -3.43 9.89 71.98 0.71 -2.72 16 9 C -0.19 -4.71 4.82 -19.73 -0.10 -4.80 16 10 C -0.05 -0.89 6.03 29.10 0.18 -0.71 16 11 C 0.50 14.97 7.65 87.66 0.67 15.64 16 12 O -0.57 -24.15 12.92 -3.04 -0.04 -24.19 16 13 N -0.64 -18.55 5.30 -303.11 -1.61 -20.16 16 14 C 0.03 1.14 6.30 38.56 0.24 1.38 16 15 C -0.11 -5.47 8.61 22.13 0.19 -5.28 16 16 C -0.17 -9.53 8.62 22.48 0.19 -9.34 16 17 C 0.06 3.53 5.55 -21.28 -0.12 3.42 16 18 C -0.50 -27.29 9.02 23.39 0.21 -27.08 16 19 H 0.08 4.10 7.85 -2.91 -0.02 4.08 16 20 C 0.02 1.15 5.42 85.24 0.46 1.61 16 21 N -0.85 -47.89 10.60 21.82 0.23 -47.66 16 22 Si 0.99 40.17 29.56 68.60 2.03 42.20 16 23 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 24 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 25 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 26 C -0.21 -9.72 9.74 22.48 0.22 -9.50 16 27 C -0.11 -4.16 9.90 22.13 0.22 -3.94 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.12 1.34 7.44 -2.38 -0.02 1.32 16 35 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.03 1.03 7.58 -2.39 -0.02 1.02 16 38 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.14 1.51 7.44 -2.38 -0.02 1.49 16 40 H 0.42 7.79 8.82 -92.71 -0.82 6.97 16 41 H 0.09 4.82 6.25 -2.91 -0.02 4.80 16 42 H 0.10 6.07 6.13 -2.91 -0.02 6.05 16 43 H 0.28 14.54 8.30 -92.71 -0.77 13.77 16 44 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 45 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -77.55 379.72 5.65 -71.90 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: 0.20 Total: 31.35 kcal Atomic # 6 Polarization: -47.90 SS G_CDS: 4.63 Total: -43.27 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -1.97 Total: -81.12 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: 0.76 Total: -21.06 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -77.55 5.65 -71.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087004646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.589 kcal (2) G-P(sol) polarization free energy of solvation -77.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds