Wall clock time and date at job start Tue Mar 31 2020 14:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.46938 * 2 1 4 4 N 1.30172 * 126.80064 * 270.02066 * 3 2 1 5 5 O 1.20918 * 111.60283 * 179.97438 * 4 3 2 6 6 C 1.34041 * 111.56761 * 0.02562 * 5 4 3 7 7 C 1.50708 * 126.77515 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47151 * 269.95886 * 7 6 5 9 9 C 1.35448 * 106.44884 * 359.97438 * 6 5 4 10 10 C 1.50698 * 128.00946 * 180.25971 * 9 6 5 11 11 C 1.50704 * 109.46895 * 269.67883 * 10 9 6 12 12 O 1.21273 * 120.00382 * 354.93447 * 11 10 9 13 13 N 1.34781 * 119.99548 * 174.93875 * 11 10 9 14 14 C 1.37137 * 120.00118 * 6.00191 * 13 11 10 15 15 H 1.08005 * 120.00237 * 53.62240 * 14 13 11 16 16 C 1.38891 * 119.99941 * 233.62129 * 14 13 11 17 17 N 1.31422 * 119.99774 * 5.46707 * 16 14 13 18 18 Si 1.86799 * 120.00147 * 185.46795 * 16 14 13 19 19 H 1.48496 * 109.46999 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47018 * 119.99802 * 18 16 14 21 21 H 1.48496 * 109.47273 * 240.00125 * 18 16 14 22 22 C 1.39787 * 119.99509 * 185.99980 * 13 11 10 23 23 C 1.38960 * 120.07968 * 8.28328 * 22 13 11 24 24 C 1.38086 * 119.91841 * 179.78696 * 23 22 13 25 25 C 1.38317 * 120.08110 * 0.46969 * 24 23 22 26 26 C 1.38307 * 120.15474 * 359.78454 * 25 24 23 27 27 C 1.38084 * 120.07642 * 359.97438 * 26 25 24 28 28 H 1.08991 * 109.47271 * 300.00161 * 1 2 3 29 29 H 1.09003 * 109.46908 * 60.00486 * 1 2 3 30 30 H 1.09003 * 109.46498 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47224 * 240.00336 * 2 1 3 32 32 H 1.08998 * 109.47675 * 119.99933 * 2 1 3 33 33 H 1.08994 * 109.47258 * 29.96127 * 7 6 5 34 34 H 1.08996 * 109.46802 * 149.96129 * 7 6 5 35 35 H 1.09008 * 109.47350 * 300.00324 * 8 7 6 36 36 H 1.09006 * 109.47265 * 59.99928 * 8 7 6 37 37 H 1.09001 * 109.47063 * 180.02562 * 8 7 6 38 38 H 1.08994 * 109.47048 * 29.67408 * 10 9 6 39 39 H 1.09001 * 109.47166 * 149.67949 * 10 9 6 40 40 H 0.96997 * 119.99934 * 184.99369 * 17 16 14 41 41 H 1.07993 * 120.04151 * 359.97438 * 23 22 13 42 42 H 1.07998 * 119.95994 * 180.25276 * 24 23 22 43 43 H 1.08000 * 119.92189 * 179.76572 * 25 24 23 44 44 H 1.07990 * 119.96343 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.03982 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2918 2.1562 -1.0423 5 8 2.6804 3.2565 -0.7253 6 6 2.7306 3.3965 0.6068 7 6 3.1631 4.6222 1.3696 8 6 4.6697 4.5570 1.6277 9 6 2.3147 2.2193 1.1321 10 6 2.1787 1.8486 2.5864 11 6 3.4712 1.2466 3.0743 12 8 4.3786 1.0453 2.2953 13 7 3.6187 0.9318 4.3765 14 6 2.5541 1.0435 5.2338 15 1 1.6208 0.5514 5.0028 16 6 2.6762 1.7892 6.3991 17 7 3.7735 2.4752 6.6283 18 14 1.2807 1.8173 7.6406 19 1 0.1648 0.9692 7.1501 20 1 1.7659 1.2933 8.9426 21 1 0.8018 3.2119 7.8157 22 6 4.8568 0.4915 4.8532 23 6 5.9767 0.5403 4.0319 24 6 7.1990 0.1086 4.5077 25 6 7.3076 -0.3811 5.7967 26 6 6.1940 -0.4361 6.6151 27 6 4.9695 -0.0014 6.1476 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.9327 5.5134 0.7859 34 1 2.6329 4.6639 2.3210 35 1 4.9001 3.6657 2.2114 36 1 5.2000 4.5152 0.6763 37 1 4.9824 5.4433 2.1798 38 1 1.9509 2.7411 3.1691 39 1 1.3734 1.1233 2.7027 40 1 3.8890 2.9372 7.4733 41 1 5.8918 0.9183 3.0239 42 1 8.0706 0.1501 3.8713 43 1 8.2641 -0.7216 6.1649 44 1 6.2822 -0.8193 7.6208 45 1 4.1002 -0.0450 6.7871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087209333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:11 Heat of formation + Delta-G solvation = 49.081911 kcal Electronic energy + Delta-G solvation = -28970.548492 eV Core-core repulsion = 25149.416551 eV Total energy + Delta-G solvation = -3821.131942 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.53072 -39.73056 -37.36616 -35.49148 -34.98192 -34.56541 -31.94557 -31.64438 -30.42583 -29.69519 -29.17729 -27.48259 -25.23197 -24.38057 -23.44671 -22.25803 -21.44122 -20.81565 -19.60653 -19.18341 -17.78383 -17.21087 -16.54067 -16.15851 -15.60228 -15.28446 -14.95568 -14.48762 -14.39863 -14.03466 -13.96886 -13.58971 -13.33196 -13.14712 -12.81849 -12.67496 -12.48440 -12.30935 -12.18953 -12.14447 -11.63253 -11.61982 -11.53431 -11.34837 -11.16562 -11.15469 -11.07766 -10.86314 -10.80559 -10.49693 -10.40448 -10.07599 -9.52846 -9.31312 -8.86109 -8.81442 -8.24004 -7.82405 -6.94208 -6.36025 -4.57889 1.84537 2.39950 2.53690 2.58313 2.97455 3.08336 3.10660 3.44834 3.69400 3.90774 4.41547 4.56378 4.71009 4.73206 5.10410 5.17072 5.22618 5.30277 5.40123 5.44469 5.45324 5.60000 5.69177 5.82372 5.85901 5.92821 5.93863 6.04562 6.04668 6.11313 6.14831 6.19623 6.21237 6.29372 6.36075 6.50288 6.59958 6.65351 6.70271 6.87154 7.09892 7.19819 7.47021 7.58979 7.62117 7.74450 8.02308 8.37855 8.64837 8.79881 9.18478 9.57396 10.43099 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010768 B = 0.004929 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.593903 B = 5678.977813 C = 6423.501626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 C 0.037 3.963 4 N -0.376 5.376 5 O 0.090 5.910 6 C -0.026 4.026 7 C -0.038 4.038 8 C -0.149 4.149 9 C -0.163 4.163 10 C -0.044 4.044 11 C 0.495 3.505 12 O -0.559 6.559 13 N -0.384 5.384 14 C -0.372 4.372 15 H 0.093 0.907 16 C 0.059 3.941 17 N -0.838 5.838 18 Si 0.912 3.088 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.277 1.277 22 C 0.196 3.804 23 C -0.182 4.182 24 C -0.117 4.117 25 C -0.175 4.175 26 C -0.119 4.119 27 C -0.108 4.108 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.274 0.726 41 H 0.164 0.836 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.557 0.822 -4.496 5.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 C -0.122 4.122 4 N -0.082 5.082 5 O 0.026 5.974 6 C -0.089 4.089 7 C -0.076 4.076 8 C -0.206 4.206 9 C -0.168 4.168 10 C -0.084 4.084 11 C 0.286 3.714 12 O -0.442 6.442 13 N -0.092 5.092 14 C -0.499 4.499 15 H 0.111 0.889 16 C -0.152 4.152 17 N -0.469 5.469 18 Si 0.738 3.262 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.203 1.203 22 C 0.099 3.901 23 C -0.202 4.202 24 C -0.136 4.136 25 C -0.194 4.194 26 C -0.138 4.138 27 C -0.128 4.128 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.181 0.819 42 H 0.122 0.878 43 H 0.118 0.882 44 H 0.122 0.878 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.196 0.764 -6.120 6.946 hybrid contribution -0.551 0.041 1.886 1.965 sum -3.746 0.805 -4.233 5.710 Atomic orbital electron populations 1.21718 0.94234 1.02021 1.02262 1.19894 0.95955 0.88679 1.03797 1.23262 1.01651 0.98693 0.88567 1.73726 1.17455 0.92978 1.24053 1.84717 1.63193 1.26830 1.22656 1.24146 1.02243 0.99094 0.83426 1.20073 0.97954 0.91237 0.98363 1.21753 0.93394 1.03343 1.02135 1.20533 1.06383 0.93096 0.96746 1.19665 0.97468 1.02988 0.88243 1.20644 0.88838 0.79174 0.82700 1.90317 1.41973 1.55964 1.55958 1.41016 1.08300 1.53236 1.06667 1.19362 0.92742 1.33218 1.04559 0.88913 1.25599 0.97264 0.93222 0.99110 1.69962 1.25789 1.26998 1.24156 0.86091 0.81187 0.78557 0.80397 1.18834 1.20173 1.20259 1.18159 0.86022 0.92798 0.93080 1.22358 0.91174 1.03405 1.03281 1.20837 0.96877 1.00546 0.95372 1.20747 0.97630 1.05854 0.95198 1.20724 0.93073 1.01505 0.98541 1.20747 0.97432 0.99430 0.95221 0.92153 0.92712 0.91859 0.90461 0.89516 0.90059 0.88616 0.91033 0.92608 0.91757 0.87629 0.88502 0.91530 0.81905 0.87835 0.88216 0.87837 0.85958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.89 37.16 0.37 -1.35 16 2 C -0.05 -0.65 6.44 -27.88 -0.18 -0.83 16 3 C 0.04 0.64 6.58 -82.10 -0.54 0.10 16 4 N -0.38 -6.75 12.07 33.42 0.40 -6.35 16 5 O 0.09 1.54 11.20 17.18 0.19 1.74 16 6 C -0.03 -0.43 6.74 -35.30 -0.24 -0.66 16 7 C -0.04 -0.52 6.35 -27.88 -0.18 -0.70 16 8 C -0.15 -2.20 9.89 37.16 0.37 -1.83 16 9 C -0.16 -2.87 4.82 -104.42 -0.50 -3.37 16 10 C -0.04 -0.79 4.85 -29.03 -0.14 -0.93 16 11 C 0.49 10.83 7.52 -10.98 -0.08 10.75 16 12 O -0.56 -13.13 12.37 5.56 0.07 -13.06 16 13 N -0.38 -9.00 2.66 -58.97 -0.16 -9.16 16 14 C -0.37 -8.47 7.40 -14.94 -0.11 -8.58 16 15 H 0.09 2.00 7.78 -52.48 -0.41 1.60 16 16 C 0.06 1.34 3.85 -17.49 -0.07 1.27 16 17 N -0.84 -20.53 11.62 55.49 0.64 -19.89 16 18 Si 0.91 17.63 29.56 -169.99 -5.02 12.60 16 19 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 20 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 22 C 0.20 4.72 5.71 -83.69 -0.48 4.25 16 23 C -0.18 -4.24 8.97 -39.37 -0.35 -4.59 16 24 C -0.12 -2.42 10.04 -39.61 -0.40 -2.82 16 25 C -0.17 -3.42 10.04 -39.53 -0.40 -3.82 16 26 C -0.12 -2.45 10.04 -39.61 -0.40 -2.85 16 27 C -0.11 -2.47 7.86 -39.37 -0.31 -2.78 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.10 1.28 7.43 -51.93 -0.39 0.90 16 35 H 0.07 1.32 7.94 -51.92 -0.41 0.91 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.11 1.87 7.35 -51.93 -0.38 1.49 16 39 H 0.10 1.61 8.08 -51.93 -0.42 1.19 16 40 H 0.27 6.41 8.32 -40.82 -0.34 6.08 16 41 H 0.16 3.94 4.75 -55.01 -0.26 3.68 16 42 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 43 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.10 1.84 8.06 -52.49 -0.42 1.41 16 45 H 0.12 2.88 6.03 -52.49 -0.32 2.56 16 LS Contribution 374.78 15.07 5.65 5.65 Total: -1.00 -27.59 374.78 -8.23 -35.82 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -6.37 Total: 11.39 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -3.64 Total: -18.74 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.89 Total: -35.40 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.26 Total: -11.32 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.02 Total: 12.60 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.59 -8.23 -35.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087209333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.904 kcal (2) G-P(sol) polarization free energy of solvation -27.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds