Wall clock time and date at job start Tue Mar 31 2020 14:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.46938 * 2 1 4 4 N 1.30172 * 126.80064 * 270.02066 * 3 2 1 5 5 O 1.20918 * 111.60283 * 179.97438 * 4 3 2 6 6 C 1.34041 * 111.56761 * 0.02562 * 5 4 3 7 7 C 1.50708 * 126.77515 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47151 * 269.95886 * 7 6 5 9 9 C 1.35448 * 106.44884 * 359.97438 * 6 5 4 10 10 C 1.50698 * 128.00946 * 180.25971 * 9 6 5 11 11 C 1.50704 * 109.46895 * 269.67883 * 10 9 6 12 12 O 1.21273 * 120.00382 * 354.93447 * 11 10 9 13 13 N 1.34781 * 119.99548 * 174.93875 * 11 10 9 14 14 C 1.37137 * 120.00118 * 6.00191 * 13 11 10 15 15 H 1.08005 * 120.00237 * 53.62240 * 14 13 11 16 16 C 1.38891 * 119.99941 * 233.62129 * 14 13 11 17 17 N 1.31422 * 119.99774 * 5.46707 * 16 14 13 18 18 Si 1.86799 * 120.00147 * 185.46795 * 16 14 13 19 19 H 1.48496 * 109.46999 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47018 * 119.99802 * 18 16 14 21 21 H 1.48496 * 109.47273 * 240.00125 * 18 16 14 22 22 C 1.39787 * 119.99509 * 185.99980 * 13 11 10 23 23 C 1.38960 * 120.07968 * 8.28328 * 22 13 11 24 24 C 1.38086 * 119.91841 * 179.78696 * 23 22 13 25 25 C 1.38317 * 120.08110 * 0.46969 * 24 23 22 26 26 C 1.38307 * 120.15474 * 359.78454 * 25 24 23 27 27 C 1.38084 * 120.07642 * 359.97438 * 26 25 24 28 28 H 1.08991 * 109.47271 * 300.00161 * 1 2 3 29 29 H 1.09003 * 109.46908 * 60.00486 * 1 2 3 30 30 H 1.09003 * 109.46498 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47224 * 240.00336 * 2 1 3 32 32 H 1.08998 * 109.47675 * 119.99933 * 2 1 3 33 33 H 1.08994 * 109.47258 * 29.96127 * 7 6 5 34 34 H 1.08996 * 109.46802 * 149.96129 * 7 6 5 35 35 H 1.09008 * 109.47350 * 300.00324 * 8 7 6 36 36 H 1.09006 * 109.47265 * 59.99928 * 8 7 6 37 37 H 1.09001 * 109.47063 * 180.02562 * 8 7 6 38 38 H 1.08994 * 109.47048 * 29.67408 * 10 9 6 39 39 H 1.09001 * 109.47166 * 149.67949 * 10 9 6 40 40 H 0.96997 * 119.99934 * 184.99369 * 17 16 14 41 41 H 1.07993 * 120.04151 * 359.97438 * 23 22 13 42 42 H 1.07998 * 119.95994 * 180.25276 * 24 23 22 43 43 H 1.08000 * 119.92189 * 179.76572 * 25 24 23 44 44 H 1.07990 * 119.96343 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.03982 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2918 2.1562 -1.0423 5 8 2.6804 3.2565 -0.7253 6 6 2.7306 3.3965 0.6068 7 6 3.1631 4.6222 1.3696 8 6 4.6697 4.5570 1.6277 9 6 2.3147 2.2193 1.1321 10 6 2.1787 1.8486 2.5864 11 6 3.4712 1.2466 3.0743 12 8 4.3786 1.0453 2.2953 13 7 3.6187 0.9318 4.3765 14 6 2.5541 1.0435 5.2338 15 1 1.6208 0.5514 5.0028 16 6 2.6762 1.7892 6.3991 17 7 3.7735 2.4752 6.6283 18 14 1.2807 1.8173 7.6406 19 1 0.1648 0.9692 7.1501 20 1 1.7659 1.2933 8.9426 21 1 0.8018 3.2119 7.8157 22 6 4.8568 0.4915 4.8532 23 6 5.9767 0.5403 4.0319 24 6 7.1990 0.1086 4.5077 25 6 7.3076 -0.3811 5.7967 26 6 6.1940 -0.4361 6.6151 27 6 4.9695 -0.0014 6.1476 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.9327 5.5134 0.7859 34 1 2.6329 4.6639 2.3210 35 1 4.9001 3.6657 2.2114 36 1 5.2000 4.5152 0.6763 37 1 4.9824 5.4433 2.1798 38 1 1.9509 2.7411 3.1691 39 1 1.3734 1.1233 2.7027 40 1 3.8890 2.9372 7.4733 41 1 5.8918 0.9183 3.0239 42 1 8.0706 0.1501 3.8713 43 1 8.2641 -0.7216 6.1649 44 1 6.2822 -0.8193 7.6208 45 1 4.1002 -0.0450 6.7871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087209333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:10 Heat of formation + Delta-G solvation = 37.524625 kcal Electronic energy + Delta-G solvation = -28971.049654 eV Core-core repulsion = 25149.416551 eV Total energy + Delta-G solvation = -3821.633103 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.87517 -41.42859 -39.01239 -36.90159 -36.59661 -35.80620 -33.70279 -32.89722 -31.75845 -31.36280 -30.70738 -28.98837 -26.98623 -25.53545 -24.68681 -23.78101 -23.08026 -22.33124 -21.12193 -20.61515 -19.45149 -18.58965 -17.93143 -17.76130 -17.32116 -16.90568 -16.32538 -16.06115 -15.80383 -15.44325 -15.15286 -15.08624 -14.75814 -14.60070 -14.42737 -14.04618 -13.84549 -13.82181 -13.65907 -13.43890 -13.25991 -13.05620 -12.97840 -12.78235 -12.65409 -12.41944 -12.37098 -12.29272 -12.06702 -12.03723 -11.72801 -11.63981 -11.03284 -10.85472 -10.56539 -10.24686 -9.88486 -9.51321 -8.68235 -8.09062 -6.36777 0.51134 0.73052 0.83564 1.22533 1.43943 1.50251 1.60965 2.02835 2.16188 2.29219 2.88403 2.99876 3.20751 3.41270 3.49355 3.86653 3.98866 4.10883 4.17277 4.27952 4.30338 4.32686 4.33885 4.41618 4.46203 4.53062 4.59803 4.67803 4.82181 4.86914 4.93512 4.94511 4.96429 5.01613 5.07870 5.10408 5.12851 5.20618 5.29798 5.33804 5.42325 5.44915 5.81355 5.89653 5.91438 6.08056 6.29381 6.64636 7.05382 7.31242 7.46371 7.85435 8.70514 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010768 B = 0.004929 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.593903 B = 5678.977813 C = 6423.501626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.047 4.047 3 C 0.033 3.967 4 N -0.393 5.393 5 O 0.086 5.914 6 C -0.020 4.020 7 C -0.037 4.037 8 C -0.143 4.143 9 C -0.186 4.186 10 C -0.030 4.030 11 C 0.487 3.513 12 O -0.581 6.581 13 N -0.397 5.397 14 C -0.379 4.379 15 H 0.102 0.898 16 C 0.027 3.973 17 N -0.872 5.872 18 Si 0.975 3.025 19 H -0.253 1.253 20 H -0.280 1.280 21 H -0.277 1.277 22 C 0.169 3.831 23 C -0.208 4.208 24 C -0.119 4.119 25 C -0.169 4.169 26 C -0.120 4.120 27 C -0.126 4.126 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.027 0.973 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.273 0.727 41 H 0.148 0.852 42 H 0.129 0.871 43 H 0.139 0.861 44 H 0.133 0.867 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.034 0.789 -3.875 5.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.085 4.085 3 C -0.126 4.126 4 N -0.101 5.101 5 O 0.024 5.976 6 C -0.083 4.083 7 C -0.075 4.075 8 C -0.200 4.200 9 C -0.190 4.190 10 C -0.069 4.069 11 C 0.280 3.720 12 O -0.466 6.466 13 N -0.105 5.105 14 C -0.506 4.506 15 H 0.119 0.881 16 C -0.181 4.181 17 N -0.505 5.505 18 Si 0.798 3.202 19 H -0.176 1.176 20 H -0.206 1.206 21 H -0.203 1.203 22 C 0.072 3.928 23 C -0.228 4.228 24 C -0.138 4.138 25 C -0.188 4.188 26 C -0.138 4.138 27 C -0.147 4.147 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.135 0.865 34 H 0.117 0.883 35 H 0.046 0.954 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.083 0.917 41 H 0.164 0.836 42 H 0.147 0.853 43 H 0.157 0.843 44 H 0.150 0.850 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.681 0.730 -5.510 6.667 hybrid contribution -0.284 0.024 1.673 1.697 sum -3.966 0.753 -3.837 5.569 Atomic orbital electron populations 1.21678 0.91984 1.03527 1.02250 1.20011 0.97860 0.87108 1.03537 1.23701 1.00942 0.99679 0.88266 1.73706 1.18513 0.93407 1.24496 1.84693 1.63246 1.26730 1.22932 1.24635 1.00731 0.99710 0.83243 1.20224 0.96966 0.91511 0.98758 1.21680 0.94373 1.02136 1.01822 1.20592 1.07936 0.93937 0.96515 1.19535 0.95786 1.03020 0.88596 1.21228 0.89848 0.78728 0.82203 1.90298 1.43086 1.56816 1.56384 1.41253 1.08428 1.53559 1.07243 1.19658 0.92893 1.33199 1.04823 0.88091 1.26273 0.98966 0.92457 1.00369 1.70082 1.27752 1.28101 1.24517 0.85147 0.78779 0.78429 0.77867 1.17611 1.20552 1.20296 1.18493 0.86644 0.93738 0.93879 1.22362 0.92432 1.05064 1.02905 1.21178 0.96683 0.99513 0.96420 1.21148 0.98946 1.04316 0.94345 1.21109 0.92379 1.00390 0.99971 1.20787 0.98253 1.00760 0.94874 0.92192 0.92631 0.89609 0.89961 0.90461 0.86499 0.88257 0.95378 0.92240 0.89683 0.87412 0.87126 0.91748 0.83566 0.85278 0.84322 0.84952 0.87190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.89 71.98 0.71 -2.35 16 2 C -0.05 -1.35 6.44 29.85 0.19 -1.16 16 3 C 0.03 1.14 6.58 43.58 0.29 1.43 16 4 N -0.39 -14.11 12.07 -49.57 -0.60 -14.71 16 5 O 0.09 2.93 11.20 71.63 0.80 3.73 16 6 C -0.02 -0.65 6.74 25.04 0.17 -0.48 16 7 C -0.04 -0.97 6.35 29.85 0.19 -0.78 16 8 C -0.14 -4.21 9.89 71.98 0.71 -3.50 16 9 C -0.19 -6.56 4.82 -19.74 -0.10 -6.65 16 10 C -0.03 -1.08 4.85 29.10 0.14 -0.94 16 11 C 0.49 22.03 7.52 87.66 0.66 22.69 16 12 O -0.58 -28.53 12.37 -3.01 -0.04 -28.57 16 13 N -0.40 -19.10 2.66 -458.88 -1.22 -20.32 16 14 C -0.38 -17.44 7.40 84.02 0.62 -16.82 16 15 H 0.10 4.35 7.78 -2.91 -0.02 4.32 16 16 C 0.03 1.22 3.85 84.91 0.33 1.55 16 17 N -0.87 -43.34 11.62 21.65 0.25 -43.09 16 18 Si 0.97 35.78 29.56 68.60 2.03 37.80 16 19 H -0.25 -8.71 7.11 99.48 0.71 -8.01 16 20 H -0.28 -10.37 7.11 99.48 0.71 -9.67 16 21 H -0.28 -10.14 7.11 99.48 0.71 -9.44 16 22 C 0.17 8.35 5.71 38.22 0.22 8.57 16 23 C -0.21 -9.89 8.97 22.41 0.20 -9.69 16 24 C -0.12 -4.82 10.04 22.25 0.22 -4.59 16 25 C -0.17 -6.22 10.04 22.30 0.22 -5.99 16 26 C -0.12 -4.74 10.04 22.25 0.22 -4.51 16 27 C -0.13 -5.83 7.86 22.41 0.18 -5.66 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.10 2.58 7.43 -2.39 -0.02 2.56 16 35 H 0.03 1.06 7.94 -2.38 -0.02 1.04 16 36 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.11 3.86 7.35 -2.39 -0.02 3.84 16 39 H 0.11 3.67 8.08 -2.39 -0.02 3.65 16 40 H 0.27 12.93 8.32 -92.71 -0.77 12.16 16 41 H 0.15 7.44 4.75 -42.81 -0.20 7.24 16 42 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 43 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 44 H 0.13 4.36 8.06 -2.92 -0.02 4.34 16 45 H 0.11 5.26 6.03 -2.91 -0.02 5.24 16 Total: -1.00 -60.95 374.78 7.21 -53.73 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: 0.81 Total: 40.31 kcal Atomic # 6 Polarization: -34.07 SS G_CDS: 5.18 Total: -28.89 kcal Atomic # 7 Polarization: -76.55 SS G_CDS: -1.57 Total: -78.11 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: 0.76 Total: -24.84 kcal Atomic # 14 Polarization: 35.78 SS G_CDS: 2.03 Total: 37.80 kcal Total: -60.95 7.21 -53.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087209333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.257 kcal (2) G-P(sol) polarization free energy of solvation -60.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds