Wall clock time and date at job start Tue Mar 31 2020 16:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47664 * 2 1 4 4 C 1.52996 * 109.47376 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47263 * 180.02562 * 4 3 2 6 6 C 1.36885 * 126.39872 * 90.02343 * 5 4 3 7 7 C 1.50706 * 126.58786 * 359.70490 * 6 5 4 8 8 C 1.34668 * 106.81739 * 179.74288 * 6 5 4 9 9 C 1.50696 * 125.98675 * 180.02562 * 8 6 5 10 10 N 1.34129 * 108.02266 * 359.97438 * 8 6 5 11 11 C 1.30503 * 109.25413 * 359.97438 * 10 8 6 12 12 S 1.76202 * 125.64594 * 179.97438 * 11 10 8 13 13 O 1.42095 * 104.27862 * 26.07644 * 12 11 10 14 14 O 1.42104 * 104.27356 * 153.93518 * 12 11 10 15 15 C 1.81397 * 104.44723 * 270.00206 * 12 11 10 16 16 C 1.52998 * 109.47307 * 180.02562 * 15 12 11 17 17 C 1.52996 * 109.47851 * 179.97438 * 16 15 12 18 18 C 1.50702 * 109.47709 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99390 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00086 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00274 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99745 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47311 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47117 * 120.00156 * 22 20 18 25 25 H 1.48503 * 109.46869 * 240.00034 * 22 20 18 26 26 H 1.08997 * 109.47097 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46878 * 299.99954 * 1 2 3 28 28 H 1.09002 * 109.46925 * 59.99446 * 1 2 3 29 29 H 1.09005 * 109.47318 * 239.99887 * 2 1 3 30 30 H 1.09007 * 109.46943 * 120.00061 * 2 1 3 31 31 H 1.09005 * 109.46845 * 59.99597 * 3 2 1 32 32 H 1.09002 * 109.47402 * 300.00261 * 3 2 1 33 33 H 1.09001 * 109.46833 * 60.00249 * 4 3 2 34 34 H 1.08999 * 109.47564 * 299.99880 * 4 3 2 35 35 H 1.09003 * 109.46483 * 90.00210 * 7 6 5 36 36 H 1.08998 * 109.46454 * 210.00022 * 7 6 5 37 37 H 1.08995 * 109.47139 * 330.00031 * 7 6 5 38 38 H 1.08999 * 109.47554 * 89.99802 * 9 8 6 39 39 H 1.09003 * 109.46831 * 209.99935 * 9 8 6 40 40 H 1.09006 * 109.47069 * 329.99160 * 9 8 6 41 41 H 1.09003 * 109.47420 * 299.99941 * 15 12 11 42 42 H 1.09000 * 109.47386 * 60.00653 * 15 12 11 43 43 H 1.09004 * 109.47125 * 300.00296 * 16 15 12 44 44 H 1.09000 * 109.47289 * 59.99663 * 16 15 12 45 45 H 1.08996 * 109.47263 * 300.00532 * 17 16 15 46 46 H 1.09006 * 109.46818 * 59.99894 * 17 16 15 47 47 H 0.96995 * 120.00388 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 7 4.0585 2.8235 0.0013 6 6 4.3293 3.5889 1.1034 7 6 4.1764 3.1746 2.5443 8 6 4.7578 4.7833 0.6526 9 6 5.1748 5.9538 1.5052 10 7 4.7494 4.7482 -0.6882 11 6 4.3326 3.5770 -1.0854 12 16 4.1543 3.0648 -2.7619 13 8 5.0854 3.8675 -3.4745 14 8 4.2922 1.6513 -2.7129 15 6 2.4541 3.5237 -3.1969 16 6 2.1734 3.1252 -4.6472 17 6 0.7393 3.5116 -5.0141 18 6 0.4631 3.1196 -6.4427 19 1 1.2334 2.6421 -7.0302 20 6 -0.7729 3.3705 -6.9998 21 7 -1.7107 3.9524 -6.2846 22 14 -1.1154 2.8838 -8.7705 23 1 0.0947 2.2496 -9.3525 24 1 -2.2455 1.9213 -8.8096 25 1 -1.4678 4.0933 -9.5569 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.9337 0.9284 -0.8892 34 1 3.9331 0.9287 0.8908 35 1 5.1070 2.7281 2.8946 36 1 3.9421 4.0494 3.1508 37 1 3.3695 2.4468 2.6294 38 1 6.2428 5.8898 1.7130 39 1 4.9626 6.8828 0.9758 40 1 4.6202 5.9357 2.4435 41 1 1.7578 3.0061 -2.5371 42 1 2.3285 4.6007 -3.0850 43 1 2.8697 3.6424 -5.3074 44 1 2.2990 2.0482 -4.7588 45 1 0.0433 2.9941 -4.3539 46 1 0.6133 4.5886 -4.9024 47 1 -2.5801 4.1292 -6.6766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105723763.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:04 Heat of formation + Delta-G solvation = -48.235883 kcal Electronic energy + Delta-G solvation = -26776.083079 eV Core-core repulsion = 23086.175072 eV Total energy + Delta-G solvation = -3689.908007 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.47133 -37.31827 -36.31943 -35.90121 -34.75604 -33.74159 -33.03736 -32.23887 -29.88674 -28.37652 -27.90886 -26.26401 -24.37781 -23.70704 -21.69899 -21.36283 -20.52058 -20.19897 -18.91613 -17.45189 -16.77815 -16.24920 -16.02283 -15.93433 -15.61537 -15.49671 -14.49514 -14.38651 -14.20016 -14.03028 -13.85210 -13.32922 -13.19716 -13.12298 -13.03220 -12.68659 -12.44596 -12.38294 -12.36230 -12.11291 -12.03828 -11.88981 -11.70733 -11.62613 -11.40406 -11.30943 -11.22474 -10.96488 -10.91893 -10.80845 -10.44018 -10.22179 -9.99879 -9.75238 -9.46974 -9.17694 -8.64268 -8.43033 -6.07634 -4.10859 0.03595 1.37147 2.35129 2.59339 2.85284 3.28601 3.36429 3.41091 3.85215 4.02185 4.33764 4.37586 4.40995 4.48989 4.65225 4.75952 4.76554 4.82314 5.01946 5.06800 5.08836 5.12784 5.19440 5.28728 5.29524 5.38591 5.44711 5.53039 5.54051 5.63342 5.66701 5.75893 5.77418 5.89668 5.95179 6.04349 6.11264 6.20158 6.37064 6.48878 6.67497 6.79983 7.53927 7.59420 7.62853 7.90075 8.29495 8.95402 9.54133 11.03542 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013124 B = 0.003441 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.056467 B = 8135.712060 C = 9168.583224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.139 4.139 4 C 0.063 3.937 5 N -0.398 5.398 6 C 0.015 3.985 7 C -0.082 4.082 8 C -0.009 4.009 9 C -0.066 4.066 10 N -0.393 5.393 11 C -0.331 4.331 12 S 2.508 3.492 13 O -0.910 6.910 14 O -0.937 6.937 15 C -0.576 4.576 16 C -0.107 4.107 17 C 0.031 3.969 18 C -0.525 4.525 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.894 3.106 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.283 1.283 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.137 0.863 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.130 0.870 42 H 0.139 0.861 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.021 0.979 46 H 0.023 0.977 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.040 -4.535 21.029 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.178 4.178 4 C -0.059 4.059 5 N -0.079 5.079 6 C -0.105 4.105 7 C -0.140 4.140 8 C -0.144 4.144 9 C -0.123 4.123 10 N -0.112 5.112 11 C -0.668 4.668 12 S 2.684 3.316 13 O -0.907 6.907 14 O -0.933 6.933 15 C -0.710 4.710 16 C -0.146 4.146 17 C -0.007 4.007 18 C -0.564 4.564 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.195 1.195 24 H -0.210 1.210 25 H -0.209 1.209 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.155 0.845 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.148 0.852 42 H 0.157 0.843 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.040 0.960 46 H 0.041 0.959 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.741 -4.401 20.039 22.711 hybrid contribution -1.038 -0.406 0.297 1.154 sum 8.702 -4.806 20.335 22.635 Atomic orbital electron populations 1.21777 0.94946 1.02121 1.02398 1.21447 0.96728 0.94868 1.02858 1.22086 0.92825 0.99215 1.03636 1.22798 0.96220 0.78983 1.07862 1.45136 1.45398 1.12454 1.04923 1.21496 1.05583 0.92800 0.90599 1.20352 1.02802 1.02846 0.87992 1.20855 1.07059 0.95773 0.90698 1.20060 1.01093 0.94209 0.96981 1.70130 1.12597 1.16836 1.11677 1.36659 1.18440 0.96449 1.15235 1.05892 0.79311 0.74745 0.71652 1.93586 1.59031 1.70070 1.67988 1.93470 1.86815 1.28204 1.84844 1.30297 1.18329 1.12941 1.09423 1.21614 1.04035 1.01413 0.87559 1.19079 0.87558 0.97385 0.96693 1.21267 0.98213 1.39668 0.97237 0.92204 1.25012 0.96208 0.95056 0.98049 1.69963 1.04382 1.42445 1.36551 0.86504 0.78342 0.78286 0.84730 1.19547 1.20973 1.20915 0.92303 0.92848 0.91854 0.90650 0.91749 0.91001 0.90846 0.84518 0.88332 0.90331 0.89400 0.91114 0.91223 0.90731 0.91191 0.85229 0.84269 0.91028 0.91191 0.96017 0.95860 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.12 -1.01 5.93 -26.73 -0.16 -1.17 16 3 C -0.14 -1.32 5.54 -26.73 -0.15 -1.47 16 4 C 0.06 0.64 5.53 -4.04 -0.02 0.62 16 5 N -0.40 -5.11 2.75 -113.01 -0.31 -5.42 16 6 C 0.02 0.18 6.95 -81.60 -0.57 -0.39 16 7 C -0.08 -0.56 9.77 36.01 0.35 -0.20 16 8 C -0.01 -0.12 7.09 -82.85 -0.59 -0.71 16 9 C -0.07 -0.62 10.22 36.00 0.37 -0.26 16 10 N -0.39 -6.57 11.23 -10.07 -0.11 -6.68 16 11 C -0.33 -5.19 7.56 -90.37 -0.68 -5.87 16 12 S 2.51 40.78 5.24 -107.50 -0.56 40.21 16 13 O -0.91 -17.84 17.93 -57.54 -1.03 -18.87 16 14 O -0.94 -15.33 15.04 -57.54 -0.87 -16.20 16 15 C -0.58 -9.15 5.98 37.16 0.22 -8.92 16 16 C -0.11 -2.10 5.16 -26.73 -0.14 -2.24 16 17 C 0.03 0.77 4.97 -27.88 -0.14 0.64 16 18 C -0.53 -14.48 9.11 -34.44 -0.31 -14.79 16 19 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 22 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.78 6.46 -51.93 -0.34 0.45 16 33 H 0.14 1.57 5.35 -51.93 -0.28 1.29 16 34 H 0.10 0.73 7.82 -51.93 -0.41 0.33 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.46 7.17 -51.93 -0.37 0.09 16 37 H 0.07 0.40 7.88 -51.93 -0.41 -0.01 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.47 7.17 -51.93 -0.37 0.10 16 41 H 0.13 1.77 6.46 -51.92 -0.34 1.43 16 42 H 0.14 2.08 8.14 -51.92 -0.42 1.66 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 393.88 15.07 5.94 5.94 Total: -1.00 -35.43 393.88 -10.75 -46.17 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -7.97 Total: -1.75 kcal Atomic # 6 Polarization: -32.69 SS G_CDS: -1.54 Total: -34.23 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.31 Total: -37.54 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -1.90 Total: -35.06 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 40.78 SS G_CDS: -0.56 Total: 40.21 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.43 -10.75 -46.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105723763.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.063 kcal (2) G-P(sol) polarization free energy of solvation -35.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds