Wall clock time and date at job start Tue Mar 31 2020 16:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47664 * 2 1 4 4 C 1.52996 * 109.47376 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47263 * 180.02562 * 4 3 2 6 6 C 1.36885 * 126.39872 * 90.02343 * 5 4 3 7 7 C 1.50706 * 126.58786 * 359.70490 * 6 5 4 8 8 C 1.34668 * 106.81739 * 179.74288 * 6 5 4 9 9 C 1.50696 * 125.98675 * 180.02562 * 8 6 5 10 10 N 1.34129 * 108.02266 * 359.97438 * 8 6 5 11 11 C 1.30503 * 109.25413 * 359.97438 * 10 8 6 12 12 S 1.76202 * 125.64594 * 179.97438 * 11 10 8 13 13 O 1.42095 * 104.27862 * 26.07644 * 12 11 10 14 14 O 1.42104 * 104.27356 * 153.93518 * 12 11 10 15 15 C 1.81397 * 104.44723 * 270.00206 * 12 11 10 16 16 C 1.52998 * 109.47307 * 180.02562 * 15 12 11 17 17 C 1.52996 * 109.47851 * 179.97438 * 16 15 12 18 18 C 1.50702 * 109.47709 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99390 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00086 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00274 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99745 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47311 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47117 * 120.00156 * 22 20 18 25 25 H 1.48503 * 109.46869 * 240.00034 * 22 20 18 26 26 H 1.08997 * 109.47097 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46878 * 299.99954 * 1 2 3 28 28 H 1.09002 * 109.46925 * 59.99446 * 1 2 3 29 29 H 1.09005 * 109.47318 * 239.99887 * 2 1 3 30 30 H 1.09007 * 109.46943 * 120.00061 * 2 1 3 31 31 H 1.09005 * 109.46845 * 59.99597 * 3 2 1 32 32 H 1.09002 * 109.47402 * 300.00261 * 3 2 1 33 33 H 1.09001 * 109.46833 * 60.00249 * 4 3 2 34 34 H 1.08999 * 109.47564 * 299.99880 * 4 3 2 35 35 H 1.09003 * 109.46483 * 90.00210 * 7 6 5 36 36 H 1.08998 * 109.46454 * 210.00022 * 7 6 5 37 37 H 1.08995 * 109.47139 * 330.00031 * 7 6 5 38 38 H 1.08999 * 109.47554 * 89.99802 * 9 8 6 39 39 H 1.09003 * 109.46831 * 209.99935 * 9 8 6 40 40 H 1.09006 * 109.47069 * 329.99160 * 9 8 6 41 41 H 1.09003 * 109.47420 * 299.99941 * 15 12 11 42 42 H 1.09000 * 109.47386 * 60.00653 * 15 12 11 43 43 H 1.09004 * 109.47125 * 300.00296 * 16 15 12 44 44 H 1.09000 * 109.47289 * 59.99663 * 16 15 12 45 45 H 1.08996 * 109.47263 * 300.00532 * 17 16 15 46 46 H 1.09006 * 109.46818 * 59.99894 * 17 16 15 47 47 H 0.96995 * 120.00388 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 7 4.0585 2.8235 0.0013 6 6 4.3293 3.5889 1.1034 7 6 4.1764 3.1746 2.5443 8 6 4.7578 4.7833 0.6526 9 6 5.1748 5.9538 1.5052 10 7 4.7494 4.7482 -0.6882 11 6 4.3326 3.5770 -1.0854 12 16 4.1543 3.0648 -2.7619 13 8 5.0854 3.8675 -3.4745 14 8 4.2922 1.6513 -2.7129 15 6 2.4541 3.5237 -3.1969 16 6 2.1734 3.1252 -4.6472 17 6 0.7393 3.5116 -5.0141 18 6 0.4631 3.1196 -6.4427 19 1 1.2334 2.6421 -7.0302 20 6 -0.7729 3.3705 -6.9998 21 7 -1.7107 3.9524 -6.2846 22 14 -1.1154 2.8838 -8.7705 23 1 0.0947 2.2496 -9.3525 24 1 -2.2455 1.9213 -8.8096 25 1 -1.4678 4.0933 -9.5569 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.9337 0.9284 -0.8892 34 1 3.9331 0.9287 0.8908 35 1 5.1070 2.7281 2.8946 36 1 3.9421 4.0494 3.1508 37 1 3.3695 2.4468 2.6294 38 1 6.2428 5.8898 1.7130 39 1 4.9626 6.8828 0.9758 40 1 4.6202 5.9357 2.4435 41 1 1.7578 3.0061 -2.5371 42 1 2.3285 4.6007 -3.0850 43 1 2.8697 3.6424 -5.3074 44 1 2.2990 2.0482 -4.7588 45 1 0.0433 2.9941 -4.3539 46 1 0.6133 4.5886 -4.9024 47 1 -2.5801 4.1292 -6.6766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105723763.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:03 Heat of formation + Delta-G solvation = -70.726283 kcal Electronic energy + Delta-G solvation = -26777.058336 eV Core-core repulsion = 23086.175072 eV Total energy + Delta-G solvation = -3690.883263 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.44318 -38.58047 -37.35097 -37.14703 -36.53803 -34.57985 -34.21313 -33.84936 -30.61355 -29.77062 -29.11126 -27.18240 -25.69350 -25.09442 -22.78343 -22.15692 -22.04923 -21.14663 -20.16625 -18.70878 -18.47701 -17.57217 -17.24330 -16.95695 -16.76218 -16.49638 -16.41858 -15.88376 -14.92297 -14.83449 -14.64439 -14.52302 -14.16590 -14.02682 -13.90186 -13.79824 -13.72837 -13.63649 -13.40331 -13.31568 -13.10474 -13.08655 -12.95534 -12.82145 -12.77978 -12.66344 -12.43926 -12.26053 -12.16873 -12.00260 -11.79884 -11.53650 -11.39839 -11.24417 -11.09704 -10.71455 -10.57506 -9.57971 -8.22065 -6.32881 -1.25824 0.36545 1.40138 1.40676 1.41907 1.54837 1.58266 1.67585 2.40444 2.59111 2.88820 3.12027 3.43737 3.57777 3.59070 3.70950 3.80446 3.93756 4.04380 4.06223 4.12127 4.28221 4.41993 4.46217 4.55199 4.59177 4.65748 4.69582 4.79267 4.84874 4.86654 4.89616 4.96930 5.00568 5.01439 5.05841 5.15959 5.22179 5.31007 5.42813 5.45594 5.59693 5.60730 5.79109 5.79264 6.18829 6.59623 6.82538 7.36553 8.89707 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013124 B = 0.003441 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.056467 B = 8135.712060 C = 9168.583224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.119 4.119 3 C -0.139 4.139 4 C 0.056 3.944 5 N -0.395 5.395 6 C 0.034 3.966 7 C -0.083 4.083 8 C -0.037 4.037 9 C -0.064 4.064 10 N -0.432 5.432 11 C -0.364 4.364 12 S 2.533 3.467 13 O -0.951 6.951 14 O -0.941 6.941 15 C -0.574 4.574 16 C -0.105 4.105 17 C 0.032 3.968 18 C -0.549 4.549 19 H 0.063 0.937 20 C 0.004 3.996 21 N -0.930 5.930 22 Si 0.962 3.038 23 H -0.262 1.262 24 H -0.276 1.276 25 H -0.279 1.279 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.040 0.960 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.121 0.879 34 H 0.135 0.865 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.150 0.850 42 H 0.144 0.856 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.008 0.992 46 H 0.001 0.999 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.298 -5.770 23.406 25.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.157 4.157 3 C -0.177 4.177 4 C -0.064 4.064 5 N -0.076 5.076 6 C -0.088 4.088 7 C -0.141 4.141 8 C -0.172 4.172 9 C -0.122 4.122 10 N -0.153 5.153 11 C -0.701 4.701 12 S 2.712 3.288 13 O -0.947 6.947 14 O -0.938 6.938 15 C -0.707 4.707 16 C -0.145 4.145 17 C -0.006 4.006 18 C -0.587 4.587 19 H 0.081 0.919 20 C -0.195 4.195 21 N -0.570 5.570 22 Si 0.787 3.213 23 H -0.186 1.186 24 H -0.202 1.202 25 H -0.205 1.205 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.139 0.861 34 H 0.153 0.847 35 H 0.116 0.884 36 H 0.127 0.873 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.120 0.880 41 H 0.168 0.832 42 H 0.163 0.837 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.026 0.974 46 H 0.020 0.980 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.995 -5.665 22.361 25.139 hybrid contribution -1.110 -0.011 -0.273 1.144 sum 8.885 -5.676 22.087 24.475 Atomic orbital electron populations 1.21796 0.95448 1.02436 1.01777 1.21450 0.96218 0.94262 1.03726 1.22099 0.92303 0.99919 1.03385 1.23020 0.96644 0.77840 1.08924 1.45361 1.44575 1.13105 1.04556 1.22318 1.02529 0.91744 0.92233 1.20628 1.04469 1.04411 0.84557 1.21610 1.07759 0.97914 0.89929 1.20195 1.02169 0.92311 0.97520 1.70069 1.13548 1.17701 1.13958 1.35936 1.21502 0.97390 1.15238 1.04776 0.78339 0.74036 0.71679 1.93530 1.60261 1.71029 1.69907 1.93459 1.86720 1.28298 1.85320 1.30202 1.19408 1.13655 1.07452 1.21422 1.00899 1.02101 0.90039 1.18957 0.90371 0.95730 0.95549 1.21737 0.98592 1.39669 0.98702 0.91853 1.25915 0.96043 0.94953 1.02556 1.70077 1.04885 1.43483 1.38538 0.85436 0.78490 0.78099 0.79293 1.18620 1.20179 1.20465 0.91558 0.91831 0.94119 0.91613 0.89067 0.89539 0.92873 0.86063 0.84723 0.88399 0.87319 0.89370 0.90269 0.91794 0.88006 0.83156 0.83736 0.91126 0.90158 0.97370 0.98039 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.91 71.98 0.71 -1.85 16 2 C -0.12 -1.74 5.93 30.59 0.18 -1.56 16 3 C -0.14 -2.37 5.54 30.59 0.17 -2.20 16 4 C 0.06 1.02 5.53 86.38 0.48 1.50 16 5 N -0.39 -9.51 2.75 -511.45 -1.41 -10.92 16 6 C 0.03 0.69 6.95 40.95 0.28 0.97 16 7 C -0.08 -0.74 9.77 71.24 0.70 -0.04 16 8 C -0.04 -0.94 7.09 41.39 0.29 -0.65 16 9 C -0.06 -1.10 10.22 71.23 0.73 -0.37 16 10 N -0.43 -14.55 11.23 -185.77 -2.09 -16.64 16 11 C -0.36 -11.42 7.56 180.26 1.36 -10.05 16 12 S 2.53 84.61 5.24 -56.49 -0.30 84.32 16 13 O -0.95 -38.82 17.93 -127.65 -2.29 -41.11 16 14 O -0.94 -31.18 15.04 -127.65 -1.92 -33.10 16 15 C -0.57 -18.82 5.98 71.98 0.43 -18.39 16 16 C -0.11 -4.28 5.16 30.59 0.16 -4.12 16 17 C 0.03 1.66 4.97 29.85 0.15 1.81 16 18 C -0.55 -30.84 9.11 25.60 0.23 -30.61 16 19 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 20 C 0.00 0.20 5.46 84.65 0.46 0.66 16 21 N -0.93 -55.44 13.29 21.45 0.28 -55.16 16 22 Si 0.96 43.88 29.54 68.60 2.03 45.90 16 23 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.05 1.11 6.46 -2.39 -0.02 1.10 16 33 H 0.12 2.65 5.35 -2.39 -0.01 2.64 16 34 H 0.13 1.46 7.82 -2.39 -0.02 1.44 16 35 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.11 0.57 7.17 -2.39 -0.02 0.55 16 37 H 0.09 0.53 7.88 -2.39 -0.02 0.51 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.10 1.02 7.17 -2.38 -0.02 1.01 16 41 H 0.15 4.22 6.46 -2.39 -0.02 4.21 16 42 H 0.14 4.55 8.14 -2.39 -0.02 4.53 16 43 H 0.07 2.83 8.14 -2.38 -0.02 2.81 16 44 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 45 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 47 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -78.85 393.88 1.59 -77.26 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.94 Total: 14.33 kcal Atomic # 6 Polarization: -71.24 SS G_CDS: 6.34 Total: -64.90 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -3.21 Total: -82.71 kcal Atomic # 8 Polarization: -69.99 SS G_CDS: -4.21 Total: -74.20 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 84.61 SS G_CDS: -0.30 Total: 84.32 kcal Total: -78.85 1.59 -77.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105723763.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.532 kcal (2) G-P(sol) polarization free energy of solvation -78.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds