Wall clock time and date at job start Tue Mar 31 2020 14:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.47095 * 2 1 4 4 C 1.38120 * 126.29760 * 275.17056 * 3 2 1 5 5 C 1.47291 * 126.42763 * 0.02562 * 4 3 2 6 6 O 1.21533 * 119.99774 * 0.28568 * 5 4 3 7 7 O 1.34751 * 120.00229 * 180.27812 * 5 4 3 8 8 C 1.45196 * 116.99988 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.47493 * 330.00354 * 8 7 5 10 10 C 1.53005 * 109.46961 * 90.00078 * 8 7 5 11 11 C 1.50706 * 109.47294 * 210.00081 * 8 7 5 12 12 H 1.08005 * 119.99507 * 0.02562 * 11 8 7 13 13 C 1.37873 * 119.99945 * 180.02562 * 11 8 7 14 14 N 1.31512 * 120.00006 * 0.02562 * 13 11 8 15 15 Si 1.86802 * 119.99791 * 179.97438 * 13 11 8 16 16 H 1.48510 * 109.46662 * 90.00114 * 15 13 11 17 17 H 1.48497 * 109.47310 * 209.99996 * 15 13 11 18 18 H 1.48499 * 109.47339 * 330.00553 * 15 13 11 19 19 C 1.41340 * 107.14598 * 180.26335 * 4 3 2 20 20 N 1.30432 * 108.01373 * 359.74180 * 19 4 3 21 21 N 1.34225 * 126.29207 * 94.99088 * 3 2 1 22 22 C 1.46494 * 125.74582 * 359.97438 * 21 3 2 23 23 C 1.50700 * 109.46969 * 95.37631 * 22 21 3 24 24 C 1.38244 * 120.00091 * 84.67612 * 23 22 21 25 25 C 1.38231 * 120.00076 * 180.02562 * 24 23 22 26 26 C 1.38239 * 119.99759 * 359.97438 * 25 24 23 27 27 C 1.38229 * 120.00257 * 0.25504 * 26 25 24 28 28 C 1.38234 * 120.00184 * 264.69056 * 23 22 21 29 29 H 1.08994 * 109.47375 * 175.00875 * 1 2 3 30 30 H 1.08994 * 109.47271 * 295.01505 * 1 2 3 31 31 H 1.09002 * 109.46645 * 55.01028 * 1 2 3 32 32 H 1.08999 * 109.47049 * 239.99872 * 2 1 3 33 33 H 1.08996 * 109.46991 * 119.99728 * 2 1 3 34 34 H 1.09000 * 109.47060 * 60.00297 * 10 8 7 35 35 H 1.09000 * 109.46895 * 179.97438 * 10 8 7 36 36 H 1.08990 * 109.47425 * 300.00140 * 10 8 7 37 37 H 0.97010 * 119.99620 * 180.02562 * 14 13 11 38 38 H 1.08005 * 125.99225 * 179.74948 * 19 4 3 39 39 H 1.09002 * 109.47384 * 335.37403 * 22 21 3 40 40 H 1.09006 * 109.47209 * 215.37152 * 22 21 3 41 41 H 1.07998 * 119.99455 * 359.97438 * 24 23 22 42 42 H 1.07994 * 119.99991 * 179.97438 * 25 24 23 43 43 H 1.08000 * 119.99707 * 179.97438 * 26 25 24 44 44 H 1.08001 * 120.00188 * 179.72870 * 27 26 25 45 45 H 1.08007 * 119.99770 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2103 2.2252 -1.1087 5 6 1.9445 1.8552 -2.5094 6 8 1.5212 0.7475 -2.7754 7 8 2.1705 2.7450 -3.4958 8 6 1.8857 2.3120 -4.8521 9 1 2.0394 1.2357 -4.9298 10 6 0.4336 2.6461 -5.1997 11 6 2.8076 3.0216 -5.8101 12 1 3.5352 3.7271 -5.4367 13 6 2.7222 2.7701 -7.1630 14 7 1.8359 1.9114 -7.6175 15 14 3.8645 3.6502 -8.3505 16 1 5.1021 2.8496 -8.5319 17 1 3.1851 3.8151 -9.6605 18 1 4.2146 4.9854 -7.8028 19 6 2.7006 3.4680 -0.6474 20 7 2.8008 3.4051 0.6515 21 7 2.3859 2.1385 1.0778 22 6 2.3491 1.6724 2.4661 23 6 3.7106 1.1605 2.8603 24 6 4.6753 2.0407 3.3140 25 6 5.9243 1.5712 3.6751 26 6 6.2085 0.2215 3.5830 27 6 5.2455 -0.6580 3.1249 28 6 3.9950 -0.1891 2.7680 29 1 -0.3634 -1.0237 -0.0894 30 1 -0.3633 0.4345 0.9312 31 1 -0.3633 0.5893 -0.8420 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.2798 3.7224 -5.1221 35 1 0.2199 2.3214 -6.2181 36 1 -0.2332 2.1329 -4.5069 37 1 1.7762 1.7342 -8.5694 38 1 2.9487 4.3203 -1.2627 39 1 1.6178 0.8697 2.5606 40 1 2.0684 2.4985 3.1195 41 1 4.4532 3.0952 3.3855 42 1 6.6780 2.2589 4.0291 43 1 7.1845 -0.1452 3.8648 44 1 5.4690 -1.7118 3.0488 45 1 3.2416 -0.8767 2.4129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113690816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:59 Heat of formation + Delta-G solvation = 2.618261 kcal Electronic energy + Delta-G solvation = -27454.278771 eV Core-core repulsion = 23631.132014 eV Total energy + Delta-G solvation = -3823.146757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.45792 -39.49556 -38.86148 -35.55326 -34.64644 -33.63723 -33.14054 -31.22959 -30.86040 -29.70972 -28.97859 -26.71686 -25.24977 -24.14367 -22.93010 -22.66567 -22.07556 -21.08454 -19.88381 -19.02627 -17.54878 -17.03835 -16.49708 -15.98431 -15.90065 -15.52735 -15.13680 -14.99939 -14.50576 -14.44184 -14.26082 -14.18149 -13.71641 -13.33612 -13.11498 -12.95247 -12.86748 -12.55968 -12.34669 -12.10613 -11.84668 -11.57469 -11.55036 -11.39239 -11.16535 -11.08904 -10.99566 -10.77989 -10.60146 -10.27857 -10.21935 -9.51660 -9.41524 -9.38703 -9.23875 -9.16727 -8.81623 -8.50078 -8.40363 -6.12546 -4.18599 0.84843 1.08669 1.61966 2.38568 2.40425 3.28805 3.34068 3.38437 3.50834 3.84749 3.88058 4.24870 4.28683 4.41392 4.49532 4.61428 4.68628 4.78422 4.91421 4.97589 5.14154 5.17623 5.20808 5.25928 5.29223 5.44573 5.51668 5.59961 5.67334 5.70970 5.82711 6.06239 6.10564 6.17997 6.19655 6.22774 6.29243 6.61002 6.64019 6.75011 6.85833 6.98266 7.01393 7.28886 7.66385 7.67886 7.81883 8.03414 8.22985 8.76539 9.01752 9.46786 10.94956 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016392 B = 0.002815 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.692252 B = 9945.116640 C =10611.055521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C 0.159 3.841 4 C -0.268 4.268 5 C 0.532 3.468 6 O -0.529 6.529 7 O -0.352 6.352 8 C 0.218 3.782 9 H 0.046 0.954 10 C -0.154 4.154 11 C -0.518 4.518 12 H 0.069 0.931 13 C 0.062 3.938 14 N -0.890 5.890 15 Si 0.910 3.090 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.271 1.271 19 C 0.105 3.895 20 N -0.304 5.304 21 N -0.359 5.359 22 C 0.172 3.828 23 C -0.118 4.118 24 C -0.087 4.087 25 C -0.123 4.123 26 C -0.110 4.110 27 C -0.123 4.123 28 C -0.101 4.101 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.036 0.964 35 H 0.098 0.902 36 H 0.016 0.984 37 H 0.265 0.735 38 H 0.197 0.803 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.400 -3.792 24.375 24.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.106 4.106 3 C 0.028 3.972 4 C -0.280 4.280 5 C 0.377 3.623 6 O -0.421 6.421 7 O -0.268 6.268 8 C 0.165 3.835 9 H 0.064 0.936 10 C -0.212 4.212 11 C -0.556 4.556 12 H 0.087 0.913 13 C -0.140 4.140 14 N -0.528 5.528 15 Si 0.737 3.263 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.196 1.196 19 C -0.083 4.083 20 N -0.123 5.123 21 N -0.137 5.137 22 C 0.052 3.948 23 C -0.119 4.119 24 C -0.106 4.106 25 C -0.141 4.141 26 C -0.129 4.129 27 C -0.141 4.141 28 C -0.119 4.119 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.128 0.872 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.116 0.884 36 H 0.035 0.965 37 H 0.075 0.925 38 H 0.214 0.786 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.515 -3.550 25.271 25.642 hybrid contribution 0.406 -0.022 -1.531 1.584 sum 2.922 -3.571 23.740 24.184 Atomic orbital electron populations 1.21645 0.93297 1.02765 1.02093 1.20448 0.97241 0.88507 1.04440 1.21446 0.94612 0.94822 0.86318 1.19377 1.20313 0.96600 0.91738 1.19850 0.74285 0.82880 0.85311 1.90724 1.44136 1.22618 1.84648 1.86526 1.77432 1.43716 1.19173 1.20583 0.93647 0.97146 0.72088 0.93589 1.22151 0.96408 0.99257 1.03348 1.21051 1.18480 1.25550 0.90566 0.91325 1.24874 0.95925 0.95302 0.97899 1.69906 1.34333 1.34025 1.14547 0.86296 0.80292 0.79944 0.79728 1.20459 1.21016 1.19586 1.24214 0.94864 0.97850 0.91329 1.77155 1.23329 0.98284 1.13490 1.48388 1.49768 1.09994 1.05600 1.20582 0.94901 1.00741 0.78607 1.19975 0.96094 0.94046 1.01786 1.21107 0.92955 0.99657 0.96870 1.21190 0.96805 0.95771 1.00373 1.21250 0.99299 0.93611 0.98695 1.21157 0.93415 1.00019 0.99478 1.21117 0.97315 0.94724 0.98768 0.91473 0.93339 0.91280 0.87156 0.91144 0.94527 0.88361 0.96520 0.92500 0.78585 0.87830 0.87637 0.85551 0.85789 0.85905 0.85719 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.90 37.16 0.37 -1.24 16 2 C -0.07 -0.84 5.31 -27.88 -0.15 -0.98 16 3 C 0.16 2.37 6.26 -81.59 -0.51 1.86 16 4 C -0.27 -4.85 6.13 -105.08 -0.64 -5.49 16 5 C 0.53 11.79 7.93 34.41 0.27 12.06 16 6 O -0.53 -12.46 14.17 -19.29 -0.27 -12.73 16 7 O -0.35 -8.70 9.71 -40.63 -0.39 -9.09 16 8 C 0.22 5.96 2.56 -27.88 -0.07 5.89 16 9 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 10 C -0.15 -3.98 9.33 37.16 0.35 -3.63 16 11 C -0.52 -14.80 8.90 -34.44 -0.31 -15.10 16 12 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 13 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 14 N -0.89 -25.57 11.32 55.43 0.63 -24.94 16 15 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 C 0.10 1.72 11.87 -16.97 -0.20 1.51 16 20 N -0.30 -4.60 12.50 30.87 0.39 -4.21 16 21 N -0.36 -4.71 3.56 -57.76 -0.21 -4.92 16 22 C 0.17 1.56 6.23 -5.20 -0.03 1.53 16 23 C -0.12 -1.12 5.46 -104.62 -0.57 -1.69 16 24 C -0.09 -0.83 9.72 -39.58 -0.38 -1.22 16 25 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 26 C -0.11 -0.91 10.05 -39.58 -0.40 -1.30 16 27 C -0.12 -1.02 10.05 -39.59 -0.40 -1.42 16 28 C -0.10 -0.89 9.67 -39.58 -0.38 -1.27 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 32 H 0.11 1.63 6.80 -51.93 -0.35 1.27 16 33 H 0.07 0.64 6.08 -51.93 -0.32 0.32 16 34 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.10 2.70 6.07 -51.93 -0.32 2.38 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.20 2.89 8.06 -52.48 -0.42 2.47 16 39 H 0.10 0.70 7.16 -51.93 -0.37 0.33 16 40 H 0.11 0.82 8.12 -51.93 -0.42 0.39 16 41 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 45 H 0.12 0.88 6.80 -52.48 -0.36 0.52 16 LS Contribution 382.07 15.07 5.76 5.76 Total: -1.00 -33.08 382.07 -8.95 -42.03 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.28 Total: 2.10 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -3.55 Total: -10.33 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.81 Total: -34.07 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.67 Total: -21.83 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.08 -8.95 -42.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113690816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.647 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds