Wall clock time and date at job start Tue Mar 31 2020 14:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.47095 * 2 1 4 4 C 1.38120 * 126.29760 * 275.17056 * 3 2 1 5 5 C 1.47291 * 126.42763 * 0.02562 * 4 3 2 6 6 O 1.21533 * 119.99774 * 0.28568 * 5 4 3 7 7 O 1.34751 * 120.00229 * 180.27812 * 5 4 3 8 8 C 1.45196 * 116.99988 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.47493 * 330.00354 * 8 7 5 10 10 C 1.53005 * 109.46961 * 90.00078 * 8 7 5 11 11 C 1.50706 * 109.47294 * 210.00081 * 8 7 5 12 12 H 1.08005 * 119.99507 * 0.02562 * 11 8 7 13 13 C 1.37873 * 119.99945 * 180.02562 * 11 8 7 14 14 N 1.31512 * 120.00006 * 0.02562 * 13 11 8 15 15 Si 1.86802 * 119.99791 * 179.97438 * 13 11 8 16 16 H 1.48510 * 109.46662 * 90.00114 * 15 13 11 17 17 H 1.48497 * 109.47310 * 209.99996 * 15 13 11 18 18 H 1.48499 * 109.47339 * 330.00553 * 15 13 11 19 19 C 1.41340 * 107.14598 * 180.26335 * 4 3 2 20 20 N 1.30432 * 108.01373 * 359.74180 * 19 4 3 21 21 N 1.34225 * 126.29207 * 94.99088 * 3 2 1 22 22 C 1.46494 * 125.74582 * 359.97438 * 21 3 2 23 23 C 1.50700 * 109.46969 * 95.37631 * 22 21 3 24 24 C 1.38244 * 120.00091 * 84.67612 * 23 22 21 25 25 C 1.38231 * 120.00076 * 180.02562 * 24 23 22 26 26 C 1.38239 * 119.99759 * 359.97438 * 25 24 23 27 27 C 1.38229 * 120.00257 * 0.25504 * 26 25 24 28 28 C 1.38234 * 120.00184 * 264.69056 * 23 22 21 29 29 H 1.08994 * 109.47375 * 175.00875 * 1 2 3 30 30 H 1.08994 * 109.47271 * 295.01505 * 1 2 3 31 31 H 1.09002 * 109.46645 * 55.01028 * 1 2 3 32 32 H 1.08999 * 109.47049 * 239.99872 * 2 1 3 33 33 H 1.08996 * 109.46991 * 119.99728 * 2 1 3 34 34 H 1.09000 * 109.47060 * 60.00297 * 10 8 7 35 35 H 1.09000 * 109.46895 * 179.97438 * 10 8 7 36 36 H 1.08990 * 109.47425 * 300.00140 * 10 8 7 37 37 H 0.97010 * 119.99620 * 180.02562 * 14 13 11 38 38 H 1.08005 * 125.99225 * 179.74948 * 19 4 3 39 39 H 1.09002 * 109.47384 * 335.37403 * 22 21 3 40 40 H 1.09006 * 109.47209 * 215.37152 * 22 21 3 41 41 H 1.07998 * 119.99455 * 359.97438 * 24 23 22 42 42 H 1.07994 * 119.99991 * 179.97438 * 25 24 23 43 43 H 1.08000 * 119.99707 * 179.97438 * 26 25 24 44 44 H 1.08001 * 120.00188 * 179.72870 * 27 26 25 45 45 H 1.08007 * 119.99770 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2103 2.2252 -1.1087 5 6 1.9445 1.8552 -2.5094 6 8 1.5212 0.7475 -2.7754 7 8 2.1705 2.7450 -3.4958 8 6 1.8857 2.3120 -4.8521 9 1 2.0394 1.2357 -4.9298 10 6 0.4336 2.6461 -5.1997 11 6 2.8076 3.0216 -5.8101 12 1 3.5352 3.7271 -5.4367 13 6 2.7222 2.7701 -7.1630 14 7 1.8359 1.9114 -7.6175 15 14 3.8645 3.6502 -8.3505 16 1 5.1021 2.8496 -8.5319 17 1 3.1851 3.8151 -9.6605 18 1 4.2146 4.9854 -7.8028 19 6 2.7006 3.4680 -0.6474 20 7 2.8008 3.4051 0.6515 21 7 2.3859 2.1385 1.0778 22 6 2.3491 1.6724 2.4661 23 6 3.7106 1.1605 2.8603 24 6 4.6753 2.0407 3.3140 25 6 5.9243 1.5712 3.6751 26 6 6.2085 0.2215 3.5830 27 6 5.2455 -0.6580 3.1249 28 6 3.9950 -0.1891 2.7680 29 1 -0.3634 -1.0237 -0.0894 30 1 -0.3633 0.4345 0.9312 31 1 -0.3633 0.5893 -0.8420 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.2798 3.7224 -5.1221 35 1 0.2199 2.3214 -6.2181 36 1 -0.2332 2.1329 -4.5069 37 1 1.7762 1.7342 -8.5694 38 1 2.9487 4.3203 -1.2627 39 1 1.6178 0.8697 2.5606 40 1 2.0684 2.4985 3.1195 41 1 4.4532 3.0952 3.3855 42 1 6.6780 2.2589 4.0291 43 1 7.1845 -0.1452 3.8648 44 1 5.4690 -1.7118 3.0488 45 1 3.2416 -0.8767 2.4129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113690816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:58 Heat of formation + Delta-G solvation = -14.408918 kcal Electronic energy + Delta-G solvation = -27455.017125 eV Core-core repulsion = 23631.132014 eV Total energy + Delta-G solvation = -3823.885111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.65219 -40.76806 -40.06053 -37.42495 -35.65963 -35.20894 -34.62677 -31.99661 -31.84938 -31.45119 -30.34135 -27.65042 -27.40678 -25.31611 -24.10211 -23.59316 -22.97046 -22.61793 -21.30309 -20.39282 -18.94905 -18.50759 -17.88052 -17.46126 -16.95821 -16.83039 -16.42159 -16.34310 -15.96337 -15.71312 -15.32160 -15.23694 -14.82802 -14.35300 -14.24455 -14.22761 -13.95435 -13.82794 -13.56001 -13.35076 -13.30595 -13.15404 -12.94567 -12.80478 -12.63482 -12.35341 -12.31008 -12.17904 -12.12275 -11.89923 -11.73557 -11.51842 -11.21087 -10.93227 -10.57101 -10.46931 -9.88832 -9.87679 -9.75433 -8.26234 -6.42472 0.12834 0.37100 0.44805 1.03346 1.38035 1.43465 1.45016 1.56892 2.16055 2.26826 2.47421 2.84399 3.04344 3.39724 3.46320 3.60515 3.79600 3.90136 4.05044 4.09653 4.21951 4.26689 4.28382 4.37053 4.41470 4.54028 4.56276 4.60034 4.66692 4.72764 4.83656 4.88644 4.94151 4.99750 5.09579 5.11021 5.23131 5.30536 5.35959 5.48466 5.52139 5.54142 5.56762 5.67544 5.79284 5.96368 6.03093 6.14929 6.44911 6.63595 7.09340 7.30697 8.81660 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016392 B = 0.002815 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.692252 B = 9945.116640 C =10611.055521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.067 4.067 3 C 0.177 3.823 4 C -0.308 4.308 5 C 0.526 3.474 6 O -0.552 6.552 7 O -0.361 6.361 8 C 0.222 3.778 9 H 0.008 0.992 10 C -0.140 4.140 11 C -0.548 4.548 12 H 0.066 0.934 13 C 0.017 3.983 14 N -0.917 5.917 15 Si 0.982 3.018 16 H -0.272 1.272 17 H -0.274 1.274 18 H -0.263 1.263 19 C 0.100 3.900 20 N -0.306 5.306 21 N -0.343 5.343 22 C 0.162 3.838 23 C -0.131 4.131 24 C -0.104 4.104 25 C -0.135 4.135 26 C -0.117 4.117 27 C -0.133 4.133 28 C -0.109 4.109 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.031 0.969 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.043 0.957 35 H 0.081 0.919 36 H 0.023 0.977 37 H 0.271 0.729 38 H 0.203 0.797 39 H 0.136 0.864 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.137 0.863 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.003 -4.066 26.229 26.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 C 0.043 3.957 4 C -0.320 4.320 5 C 0.374 3.626 6 O -0.445 6.445 7 O -0.278 6.278 8 C 0.168 3.832 9 H 0.026 0.974 10 C -0.198 4.198 11 C -0.585 4.585 12 H 0.084 0.916 13 C -0.183 4.183 14 N -0.555 5.555 15 Si 0.805 3.195 16 H -0.198 1.198 17 H -0.199 1.199 18 H -0.187 1.187 19 C -0.088 4.088 20 N -0.124 5.124 21 N -0.121 5.121 22 C 0.044 3.956 23 C -0.132 4.132 24 C -0.122 4.122 25 C -0.153 4.153 26 C -0.135 4.135 27 C -0.150 4.150 28 C -0.127 4.127 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.102 0.898 33 H 0.131 0.869 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.042 0.958 37 H 0.080 0.920 38 H 0.220 0.780 39 H 0.153 0.847 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.155 0.845 43 H 0.160 0.840 44 H 0.161 0.839 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.118 -3.816 27.178 27.621 hybrid contribution 0.245 -0.032 -1.922 1.938 sum 3.363 -3.848 25.256 25.768 Atomic orbital electron populations 1.21630 0.92380 1.03522 1.01876 1.20554 0.97902 0.86914 1.05202 1.21737 0.92709 0.95442 0.85815 1.19270 1.23946 0.98622 0.90179 1.20501 0.73566 0.82302 0.86273 1.90696 1.45371 1.23341 1.85112 1.86509 1.78137 1.44487 1.18638 1.20294 0.94365 0.94834 0.73677 0.97416 1.21966 0.95821 0.99615 1.02390 1.21314 1.19317 1.26315 0.91604 0.91584 1.25813 0.97348 0.95752 0.99378 1.70021 1.35418 1.34760 1.15259 0.85196 0.78101 0.78888 0.77303 1.19770 1.19921 1.18737 1.24319 0.94966 0.97627 0.91885 1.77126 1.23176 0.99491 1.12610 1.48758 1.47627 1.08937 1.06753 1.21079 0.95832 1.02434 0.76248 1.20034 0.96125 0.94482 1.02512 1.21274 0.93604 0.99850 0.97485 1.21451 0.96965 0.96500 1.00396 1.21574 1.00271 0.93499 0.98135 1.21493 0.93361 1.01133 0.99059 1.21409 0.98041 0.94768 0.98495 0.89631 0.90629 0.95009 0.89800 0.86906 0.93784 0.90013 0.95827 0.92009 0.78048 0.84661 0.86050 0.85670 0.84474 0.84036 0.83882 0.83980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.90 71.98 0.71 -2.17 16 2 C -0.07 -1.54 5.31 29.85 0.16 -1.39 16 3 C 0.18 5.07 6.26 42.17 0.26 5.34 16 4 C -0.31 -11.33 6.13 -20.16 -0.12 -11.45 16 5 C 0.53 24.39 7.93 70.20 0.56 24.95 16 6 O -0.55 -27.32 14.17 19.73 0.28 -27.04 16 7 O -0.36 -18.65 9.71 -56.62 -0.55 -19.20 16 8 C 0.22 12.67 2.56 29.85 0.08 12.75 16 9 H 0.01 0.51 7.16 -2.39 -0.02 0.49 16 10 C -0.14 -7.50 9.33 71.98 0.67 -6.83 16 11 C -0.55 -32.11 8.90 25.60 0.23 -31.88 16 12 H 0.07 3.80 7.81 -2.91 -0.02 3.78 16 13 C 0.02 0.94 5.30 84.65 0.45 1.39 16 14 N -0.92 -53.56 11.32 21.45 0.24 -53.32 16 15 Si 0.98 43.79 29.54 68.60 2.03 45.82 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 18 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 19 C 0.10 3.28 11.87 85.66 1.02 4.29 16 20 N -0.31 -8.93 12.50 -56.25 -0.70 -9.64 16 21 N -0.34 -8.34 3.56 -336.66 -1.20 -9.54 16 22 C 0.16 2.44 6.23 85.63 0.53 2.98 16 23 C -0.13 -2.15 5.46 -19.86 -0.11 -2.26 16 24 C -0.10 -1.81 9.72 22.27 0.22 -1.60 16 25 C -0.14 -2.13 10.05 22.27 0.22 -1.91 16 26 C -0.12 -1.67 10.05 22.27 0.22 -1.45 16 27 C -0.13 -1.88 10.05 22.27 0.22 -1.65 16 28 C -0.11 -1.60 9.67 22.27 0.22 -1.38 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.03 0.91 8.08 -2.39 -0.02 0.89 16 32 H 0.08 2.46 6.80 -2.39 -0.02 2.45 16 33 H 0.11 1.61 6.08 -2.39 -0.01 1.60 16 34 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.08 4.64 6.07 -2.39 -0.01 4.62 16 36 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.27 14.73 8.31 -92.70 -0.77 13.96 16 38 H 0.20 6.12 8.06 -2.91 -0.02 6.10 16 39 H 0.14 1.19 7.16 -2.39 -0.02 1.18 16 40 H 0.12 1.49 8.12 -2.38 -0.02 1.48 16 41 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 42 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 43 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 44 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 45 H 0.14 1.45 6.80 -2.91 -0.02 1.43 16 Total: -1.00 -74.11 382.07 6.63 -67.48 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.99 Total: 17.71 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: 5.54 Total: -12.28 kcal Atomic # 7 Polarization: -70.83 SS G_CDS: -1.66 Total: -72.49 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -0.27 Total: -46.24 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -74.11 6.63 -67.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113690816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.075 kcal (2) G-P(sol) polarization free energy of solvation -74.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds