Wall clock time and date at job start Tue Mar 31 2020 14:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47226 * 2 1 4 4 C 1.38122 * 126.29683 * 269.97760 * 3 2 1 5 5 C 1.47288 * 126.42692 * 359.97438 * 4 3 2 6 6 O 1.21521 * 120.00169 * 359.97438 * 5 4 3 7 7 O 1.34754 * 119.99783 * 179.97438 * 5 4 3 8 8 C 1.45201 * 117.00163 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.46816 * 30.00320 * 8 7 5 10 10 C 1.53002 * 109.47187 * 270.00415 * 8 7 5 11 11 C 1.50692 * 109.47501 * 149.99959 * 8 7 5 12 12 H 1.08007 * 119.99761 * 0.02562 * 11 8 7 13 13 C 1.37876 * 120.00217 * 180.02562 * 11 8 7 14 14 N 1.31511 * 120.00310 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 119.99999 * 180.02562 * 13 11 8 16 16 H 1.48492 * 109.47239 * 59.99673 * 15 13 11 17 17 H 1.48497 * 109.47232 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47038 * 299.99909 * 15 13 11 19 19 C 1.41342 * 107.14401 * 180.23682 * 4 3 2 20 20 N 1.30428 * 108.01215 * 359.59703 * 19 4 3 21 21 N 1.34223 * 126.29351 * 89.97358 * 3 2 1 22 22 C 1.46499 * 125.74428 * 0.02562 * 21 3 2 23 23 C 1.50704 * 109.47242 * 89.99168 * 22 21 3 24 24 C 1.38233 * 120.00435 * 269.72825 * 23 22 21 25 25 C 1.38233 * 119.99761 * 179.76498 * 24 23 22 26 26 C 1.38234 * 120.00317 * 0.51033 * 25 24 23 27 27 C 1.38240 * 119.99761 * 359.74244 * 26 25 24 28 28 C 1.38230 * 120.00160 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.47085 * 299.99745 * 1 2 3 30 30 H 1.08998 * 109.47313 * 59.99851 * 1 2 3 31 31 H 1.09000 * 109.47191 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.46855 * 240.00614 * 2 1 3 33 33 H 1.08995 * 109.47235 * 120.00676 * 2 1 3 34 34 H 1.09003 * 109.46961 * 179.97438 * 10 8 7 35 35 H 1.08999 * 109.46730 * 299.99530 * 10 8 7 36 36 H 1.08997 * 109.46993 * 59.99768 * 10 8 7 37 37 H 0.96992 * 120.00299 * 179.97438 * 14 13 11 38 38 H 1.07999 * 125.99289 * 179.75689 * 19 4 3 39 39 H 1.08993 * 109.47284 * 209.99877 * 22 21 3 40 40 H 1.08996 * 109.47044 * 329.99799 * 22 21 3 41 41 H 1.08003 * 119.99591 * 0.02562 * 24 23 22 42 42 H 1.07998 * 119.99641 * 180.22742 * 25 24 23 43 43 H 1.07998 * 120.00234 * 179.72327 * 26 25 24 44 44 H 1.07998 * 119.99487 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.00104 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3053 2.1916 -1.1132 5 6 2.1605 1.7788 -2.5196 6 8 1.7664 0.6609 -2.7873 7 8 2.4651 2.6409 -3.5096 8 6 2.2990 2.1660 -4.8716 9 1 1.4951 1.4306 -4.9045 10 6 3.6012 1.5197 -5.3488 11 6 1.9554 3.3262 -5.7698 12 1 1.8707 4.3211 -5.3582 13 6 1.7490 3.1176 -7.1170 14 7 1.8516 1.9061 -7.6181 15 14 1.3238 4.5560 -8.2305 16 1 2.4196 5.5571 -8.1861 17 1 1.1526 4.0701 -9.6232 18 1 0.0604 5.1841 -7.7670 19 6 2.7555 3.4486 -0.6495 20 7 2.7411 3.4262 0.6545 21 7 2.2967 2.1700 1.0818 22 6 2.1460 1.7441 2.4754 23 6 3.4340 1.1247 2.9535 24 6 3.6432 -0.2340 2.8088 25 6 4.8266 -0.8012 3.2429 26 6 5.7966 -0.0115 3.8314 27 6 5.5853 1.3465 3.9810 28 6 4.4038 1.9145 3.5425 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.4763 1.1629 -6.3712 35 1 4.4050 2.2552 -5.3160 36 1 3.8496 0.6805 -4.6992 37 1 1.7061 1.7593 -8.5658 38 1 3.0560 4.2823 -1.2667 39 1 1.9061 2.6078 3.0954 40 1 1.3423 1.0114 2.5465 41 1 2.8836 -0.8516 2.3526 42 1 4.9915 -1.8621 3.1265 43 1 6.7194 -0.4554 4.1747 44 1 6.3429 1.9633 4.4411 45 1 4.2386 2.9753 3.6597 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113690817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:02 Heat of formation + Delta-G solvation = 3.459074 kcal Electronic energy + Delta-G solvation = -27480.106840 eV Core-core repulsion = 23656.996544 eV Total energy + Delta-G solvation = -3823.110296 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.46727 -39.51253 -38.86770 -35.55606 -34.68024 -33.61896 -33.14232 -31.24687 -30.86682 -29.71270 -29.00091 -26.73239 -25.24790 -24.13060 -22.94957 -22.70621 -22.06290 -21.10050 -19.87295 -19.05773 -17.58793 -17.04036 -16.50186 -15.97383 -15.90255 -15.53822 -15.11121 -15.01225 -14.56735 -14.44670 -14.25515 -14.17826 -13.72326 -13.36232 -13.13114 -12.98341 -12.85532 -12.56248 -12.35108 -12.11967 -11.81443 -11.61649 -11.55040 -11.44102 -11.16958 -11.06384 -11.00198 -10.77724 -10.55660 -10.31188 -10.21648 -9.50809 -9.41583 -9.39042 -9.25776 -9.17949 -8.82667 -8.50244 -8.40447 -6.12333 -4.18552 0.83116 1.06624 1.61632 2.38375 2.40428 3.30603 3.33724 3.36532 3.49128 3.85789 3.86631 4.25060 4.27646 4.41137 4.49717 4.56469 4.66826 4.76212 4.93035 4.97634 5.14114 5.15721 5.20771 5.24173 5.28366 5.43604 5.51178 5.58169 5.66911 5.68770 5.81733 6.06423 6.09068 6.16039 6.17831 6.22022 6.28175 6.60860 6.62169 6.75057 6.85967 6.98413 7.01422 7.28924 7.66420 7.67735 7.81763 8.03277 8.22950 8.76271 9.01371 9.46729 10.95175 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020529 B = 0.002655 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.607870 B =10543.252225 C =10676.486189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.073 4.073 3 C 0.160 3.840 4 C -0.268 4.268 5 C 0.532 3.468 6 O -0.530 6.530 7 O -0.352 6.352 8 C 0.218 3.782 9 H 0.047 0.953 10 C -0.154 4.154 11 C -0.519 4.519 12 H 0.068 0.932 13 C 0.062 3.938 14 N -0.890 5.890 15 Si 0.911 3.089 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.105 3.895 20 N -0.305 5.305 21 N -0.358 5.358 22 C 0.172 3.828 23 C -0.118 4.118 24 C -0.102 4.102 25 C -0.122 4.122 26 C -0.110 4.110 27 C -0.123 4.123 28 C -0.089 4.089 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.036 0.964 36 H 0.016 0.984 37 H 0.266 0.734 38 H 0.198 0.802 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.074 -4.376 24.528 25.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 C 0.029 3.971 4 C -0.280 4.280 5 C 0.377 3.623 6 O -0.422 6.422 7 O -0.268 6.268 8 C 0.166 3.834 9 H 0.064 0.936 10 C -0.212 4.212 11 C -0.557 4.557 12 H 0.086 0.914 13 C -0.140 4.140 14 N -0.528 5.528 15 Si 0.738 3.262 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.082 4.082 20 N -0.123 5.123 21 N -0.137 5.137 22 C 0.051 3.949 23 C -0.119 4.119 24 C -0.120 4.120 25 C -0.140 4.140 26 C -0.129 4.129 27 C -0.141 4.141 28 C -0.108 4.108 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.131 0.869 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.055 0.945 36 H 0.035 0.965 37 H 0.076 0.924 38 H 0.214 0.786 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.153 -4.124 25.420 25.945 hybrid contribution -0.212 0.216 -1.481 1.511 sum 2.941 -3.908 23.939 24.434 Atomic orbital electron populations 1.21659 0.93377 1.02508 1.02396 1.20550 0.97172 0.88625 1.04780 1.21425 0.94856 0.94586 0.86248 1.19382 1.20434 0.96726 0.91501 1.19845 0.73921 0.83092 0.85409 1.90711 1.45024 1.21548 1.84906 1.86528 1.77412 1.44196 1.18695 1.20578 0.95199 0.95881 0.71771 0.93565 1.22156 0.97779 0.97749 1.03513 1.21007 1.48388 0.94215 0.92097 0.91370 1.24873 0.95046 0.96426 0.97628 1.69889 1.48876 1.20229 1.13826 0.86350 0.79104 0.81764 0.79000 1.19957 1.21102 1.20023 1.24212 0.95237 0.97519 0.91279 1.77160 1.22646 0.99088 1.13390 1.48384 1.50358 1.09840 1.05151 1.20582 0.95314 1.00779 0.78190 1.19989 0.96740 0.94110 1.01024 1.21170 0.97855 0.94258 0.98756 1.21166 0.93769 1.00187 0.98850 1.21253 0.99068 0.94065 0.98473 1.21187 0.97343 0.95244 1.00330 1.21106 0.93134 0.99799 0.96738 0.93312 0.91276 0.91451 0.86874 0.90979 0.88361 0.94515 0.96540 0.92432 0.78573 0.87500 0.87915 0.85711 0.85684 0.85882 0.85779 0.85597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.89 37.16 0.37 -1.24 16 2 C -0.07 -0.90 5.39 -27.88 -0.15 -1.05 16 3 C 0.16 2.39 6.26 -81.59 -0.51 1.88 16 4 C -0.27 -4.87 6.13 -105.08 -0.64 -5.51 16 5 C 0.53 11.84 7.93 34.41 0.27 12.11 16 6 O -0.53 -12.52 14.10 -19.28 -0.27 -12.79 16 7 O -0.35 -8.70 9.71 -40.64 -0.39 -9.10 16 8 C 0.22 5.98 2.56 -27.89 -0.07 5.91 16 9 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 10 C -0.15 -4.01 9.33 37.16 0.35 -3.66 16 11 C -0.52 -14.80 8.90 -34.44 -0.31 -15.10 16 12 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 13 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 14 N -0.89 -25.57 11.32 55.43 0.63 -24.95 16 15 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 19 C 0.11 1.72 11.87 -16.97 -0.20 1.52 16 20 N -0.30 -4.63 12.50 30.87 0.39 -4.24 16 21 N -0.36 -4.73 3.56 -57.76 -0.21 -4.94 16 22 C 0.17 1.57 6.16 -5.19 -0.03 1.54 16 23 C -0.12 -1.10 5.46 -104.62 -0.57 -1.68 16 24 C -0.10 -0.90 9.46 -39.59 -0.37 -1.27 16 25 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 26 C -0.11 -0.88 10.05 -39.58 -0.40 -1.28 16 27 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 28 C -0.09 -0.82 9.70 -39.58 -0.38 -1.21 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.11 1.69 6.50 -51.92 -0.34 1.35 16 33 H 0.07 0.67 5.27 -51.93 -0.27 0.40 16 34 H 0.10 2.70 6.07 -51.93 -0.32 2.39 16 35 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.20 2.90 8.06 -52.49 -0.42 2.48 16 39 H 0.11 0.83 8.08 -51.93 -0.42 0.41 16 40 H 0.10 0.71 7.56 -51.93 -0.39 0.31 16 41 H 0.13 0.91 5.95 -52.48 -0.31 0.60 16 42 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 44 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 380.25 15.07 5.73 5.73 Total: -1.00 -33.08 380.25 -8.89 -41.97 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.20 Total: 2.23 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -3.55 Total: -10.24 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.81 Total: -34.13 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.67 Total: -21.89 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.08 -8.89 -41.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113690817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.430 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds