Wall clock time and date at job start Tue Mar 31 2020 14:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47226 * 2 1 4 4 C 1.38122 * 126.29683 * 269.97760 * 3 2 1 5 5 C 1.47288 * 126.42692 * 359.97438 * 4 3 2 6 6 O 1.21521 * 120.00169 * 359.97438 * 5 4 3 7 7 O 1.34754 * 119.99783 * 179.97438 * 5 4 3 8 8 C 1.45201 * 117.00163 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.46816 * 30.00320 * 8 7 5 10 10 C 1.53002 * 109.47187 * 270.00415 * 8 7 5 11 11 C 1.50692 * 109.47501 * 149.99959 * 8 7 5 12 12 H 1.08007 * 119.99761 * 0.02562 * 11 8 7 13 13 C 1.37876 * 120.00217 * 180.02562 * 11 8 7 14 14 N 1.31511 * 120.00310 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 119.99999 * 180.02562 * 13 11 8 16 16 H 1.48492 * 109.47239 * 59.99673 * 15 13 11 17 17 H 1.48497 * 109.47232 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47038 * 299.99909 * 15 13 11 19 19 C 1.41342 * 107.14401 * 180.23682 * 4 3 2 20 20 N 1.30428 * 108.01215 * 359.59703 * 19 4 3 21 21 N 1.34223 * 126.29351 * 89.97358 * 3 2 1 22 22 C 1.46499 * 125.74428 * 0.02562 * 21 3 2 23 23 C 1.50704 * 109.47242 * 89.99168 * 22 21 3 24 24 C 1.38233 * 120.00435 * 269.72825 * 23 22 21 25 25 C 1.38233 * 119.99761 * 179.76498 * 24 23 22 26 26 C 1.38234 * 120.00317 * 0.51033 * 25 24 23 27 27 C 1.38240 * 119.99761 * 359.74244 * 26 25 24 28 28 C 1.38230 * 120.00160 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.47085 * 299.99745 * 1 2 3 30 30 H 1.08998 * 109.47313 * 59.99851 * 1 2 3 31 31 H 1.09000 * 109.47191 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.46855 * 240.00614 * 2 1 3 33 33 H 1.08995 * 109.47235 * 120.00676 * 2 1 3 34 34 H 1.09003 * 109.46961 * 179.97438 * 10 8 7 35 35 H 1.08999 * 109.46730 * 299.99530 * 10 8 7 36 36 H 1.08997 * 109.46993 * 59.99768 * 10 8 7 37 37 H 0.96992 * 120.00299 * 179.97438 * 14 13 11 38 38 H 1.07999 * 125.99289 * 179.75689 * 19 4 3 39 39 H 1.08993 * 109.47284 * 209.99877 * 22 21 3 40 40 H 1.08996 * 109.47044 * 329.99799 * 22 21 3 41 41 H 1.08003 * 119.99591 * 0.02562 * 24 23 22 42 42 H 1.07998 * 119.99641 * 180.22742 * 25 24 23 43 43 H 1.07998 * 120.00234 * 179.72327 * 26 25 24 44 44 H 1.07998 * 119.99487 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.00104 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3053 2.1916 -1.1132 5 6 2.1605 1.7788 -2.5196 6 8 1.7664 0.6609 -2.7873 7 8 2.4651 2.6409 -3.5096 8 6 2.2990 2.1660 -4.8716 9 1 1.4951 1.4306 -4.9045 10 6 3.6012 1.5197 -5.3488 11 6 1.9554 3.3262 -5.7698 12 1 1.8707 4.3211 -5.3582 13 6 1.7490 3.1176 -7.1170 14 7 1.8516 1.9061 -7.6181 15 14 1.3238 4.5560 -8.2305 16 1 2.4196 5.5571 -8.1861 17 1 1.1526 4.0701 -9.6232 18 1 0.0604 5.1841 -7.7670 19 6 2.7555 3.4486 -0.6495 20 7 2.7411 3.4262 0.6545 21 7 2.2967 2.1700 1.0818 22 6 2.1460 1.7441 2.4754 23 6 3.4340 1.1247 2.9535 24 6 3.6432 -0.2340 2.8088 25 6 4.8266 -0.8012 3.2429 26 6 5.7966 -0.0115 3.8314 27 6 5.5853 1.3465 3.9810 28 6 4.4038 1.9145 3.5425 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.4763 1.1629 -6.3712 35 1 4.4050 2.2552 -5.3160 36 1 3.8496 0.6805 -4.6992 37 1 1.7061 1.7593 -8.5658 38 1 3.0560 4.2823 -1.2667 39 1 1.9061 2.6078 3.0954 40 1 1.3423 1.0114 2.5465 41 1 2.8836 -0.8516 2.3526 42 1 4.9915 -1.8621 3.1265 43 1 6.7194 -0.4554 4.1747 44 1 6.3429 1.9633 4.4411 45 1 4.2386 2.9753 3.6597 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113690817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:01 Heat of formation + Delta-G solvation = -13.607705 kcal Electronic energy + Delta-G solvation = -27480.846911 eV Core-core repulsion = 23656.996544 eV Total energy + Delta-G solvation = -3823.850367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.66614 -40.78022 -40.06957 -37.43489 -35.69158 -35.21451 -34.61078 -32.00047 -31.85789 -31.45207 -30.37137 -27.66854 -27.40866 -25.29977 -24.13609 -23.60960 -22.94444 -22.64832 -21.30682 -20.42298 -18.95756 -18.50623 -17.95569 -17.43191 -16.92389 -16.82463 -16.42154 -16.34654 -15.98991 -15.75627 -15.34474 -15.23239 -14.82385 -14.41403 -14.28285 -14.10774 -14.06035 -13.78770 -13.55674 -13.36322 -13.31648 -13.15164 -12.94765 -12.79935 -12.66886 -12.37383 -12.34772 -12.18236 -12.14417 -11.88659 -11.70531 -11.50511 -11.20796 -10.95045 -10.56565 -10.47342 -9.89554 -9.88247 -9.76601 -8.25902 -6.42282 0.12122 0.35954 0.44136 1.02650 1.37586 1.43535 1.47143 1.55221 2.15605 2.25798 2.47392 2.83913 3.04569 3.38631 3.46934 3.59234 3.75280 3.88957 4.03314 4.08654 4.21885 4.25704 4.27599 4.36637 4.40548 4.53216 4.54325 4.59874 4.65970 4.72459 4.82785 4.87822 4.92714 4.99442 5.09416 5.09963 5.22829 5.28049 5.35439 5.48227 5.51885 5.53590 5.56501 5.66986 5.78268 5.95947 6.02488 6.14647 6.44331 6.63502 7.08602 7.30580 8.81864 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020529 B = 0.002655 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.607870 B =10543.252225 C =10676.486189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.071 4.071 3 C 0.177 3.823 4 C -0.308 4.308 5 C 0.527 3.473 6 O -0.553 6.553 7 O -0.361 6.361 8 C 0.222 3.778 9 H 0.009 0.991 10 C -0.141 4.141 11 C -0.548 4.548 12 H 0.067 0.933 13 C 0.017 3.983 14 N -0.917 5.917 15 Si 0.982 3.018 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.269 1.269 19 C 0.100 3.900 20 N -0.306 5.306 21 N -0.343 5.343 22 C 0.162 3.838 23 C -0.130 4.130 24 C -0.111 4.111 25 C -0.132 4.132 26 C -0.116 4.116 27 C -0.133 4.133 28 C -0.104 4.104 29 H 0.073 0.927 30 H 0.031 0.969 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.022 0.978 37 H 0.271 0.729 38 H 0.204 0.796 39 H 0.123 0.877 40 H 0.133 0.867 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.107 -4.286 26.446 26.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 C 0.043 3.957 4 C -0.321 4.321 5 C 0.374 3.626 6 O -0.446 6.446 7 O -0.277 6.277 8 C 0.168 3.832 9 H 0.026 0.974 10 C -0.199 4.199 11 C -0.586 4.586 12 H 0.085 0.915 13 C -0.183 4.183 14 N -0.555 5.555 15 Si 0.805 3.195 16 H -0.189 1.189 17 H -0.201 1.201 18 H -0.194 1.194 19 C -0.087 4.087 20 N -0.124 5.124 21 N -0.121 5.121 22 C 0.044 3.956 23 C -0.131 4.131 24 C -0.129 4.129 25 C -0.150 4.150 26 C -0.134 4.134 27 C -0.151 4.151 28 C -0.123 4.123 29 H 0.092 0.908 30 H 0.051 0.949 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.129 0.871 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.041 0.959 37 H 0.080 0.920 38 H 0.220 0.780 39 H 0.141 0.859 40 H 0.151 0.849 41 H 0.157 0.843 42 H 0.161 0.839 43 H 0.160 0.840 44 H 0.157 0.843 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.196 -4.029 27.392 27.871 hybrid contribution -0.192 0.087 -1.885 1.897 sum 3.003 -3.942 25.507 25.984 Atomic orbital electron populations 1.21650 0.92296 1.03822 1.01790 1.20639 0.97966 0.87045 1.05351 1.21711 0.92908 0.95252 0.85791 1.19276 1.24218 0.98682 0.89882 1.20497 0.73109 0.82574 0.86398 1.90685 1.46221 1.22351 1.85378 1.86510 1.78129 1.44917 1.18152 1.20293 0.94453 0.95019 0.73386 0.97361 1.21977 0.97419 0.97953 1.02512 1.21277 1.49866 0.94345 0.93090 0.91523 1.25817 0.94249 0.99392 0.98831 1.70008 1.48794 1.22250 1.14425 0.85248 0.79141 0.78203 0.76896 1.18862 1.20123 1.19389 1.24324 0.95338 0.97244 0.91824 1.77129 1.22541 1.00249 1.12519 1.48756 1.48232 1.08752 1.06324 1.21072 0.96420 1.02353 0.75799 1.20030 0.96824 0.94513 1.01763 1.21420 0.98522 0.94249 0.98759 1.21489 0.93655 1.01292 0.98523 1.21582 0.99848 0.94039 0.97951 1.21461 0.97524 0.95838 1.00312 1.21294 0.93655 1.00119 0.97183 0.90773 0.94945 0.89252 0.89561 0.87081 0.89977 0.93789 0.95916 0.91996 0.77966 0.85924 0.84940 0.84263 0.83919 0.83961 0.84303 0.85410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.89 71.98 0.71 -2.20 16 2 C -0.07 -1.68 5.39 29.85 0.16 -1.51 16 3 C 0.18 5.14 6.26 42.17 0.26 5.40 16 4 C -0.31 -11.40 6.13 -20.16 -0.12 -11.52 16 5 C 0.53 24.50 7.93 70.20 0.56 25.06 16 6 O -0.55 -27.51 14.10 19.77 0.28 -27.23 16 7 O -0.36 -18.63 9.71 -56.65 -0.55 -19.18 16 8 C 0.22 12.69 2.56 29.85 0.08 12.77 16 9 H 0.01 0.54 7.16 -2.39 -0.02 0.53 16 10 C -0.14 -7.56 9.33 71.98 0.67 -6.89 16 11 C -0.55 -32.07 8.90 25.60 0.23 -31.85 16 12 H 0.07 3.81 7.81 -2.91 -0.02 3.79 16 13 C 0.02 0.94 5.30 84.65 0.45 1.39 16 14 N -0.92 -53.59 11.32 21.45 0.24 -53.35 16 15 Si 0.98 43.72 29.54 68.60 2.03 45.75 16 16 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 17 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 C 0.10 3.30 11.87 85.67 1.02 4.32 16 20 N -0.31 -8.98 12.50 -56.25 -0.70 -9.69 16 21 N -0.34 -8.42 3.56 -336.67 -1.20 -9.61 16 22 C 0.16 2.48 6.16 85.63 0.53 3.00 16 23 C -0.13 -2.13 5.46 -19.86 -0.11 -2.24 16 24 C -0.11 -1.65 9.46 22.27 0.21 -1.44 16 25 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 26 C -0.12 -1.60 10.05 22.27 0.22 -1.38 16 27 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 28 C -0.10 -1.74 9.70 22.27 0.22 -1.52 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.09 2.58 6.50 -2.38 -0.02 2.57 16 33 H 0.11 1.71 5.27 -2.39 -0.01 1.69 16 34 H 0.08 4.67 6.07 -2.39 -0.01 4.65 16 35 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.02 1.12 8.14 -2.39 -0.02 1.11 16 37 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 38 H 0.20 6.13 8.06 -2.91 -0.02 6.11 16 39 H 0.12 1.54 8.08 -2.39 -0.02 1.52 16 40 H 0.13 1.26 7.56 -2.39 -0.02 1.24 16 41 H 0.14 1.53 5.95 -2.91 -0.02 1.52 16 42 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 43 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 44 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 45 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -73.93 380.25 6.62 -67.31 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 1.00 Total: 18.00 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 5.53 Total: -11.99 kcal Atomic # 7 Polarization: -70.99 SS G_CDS: -1.66 Total: -72.65 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -0.27 Total: -46.41 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -73.93 6.62 -67.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113690817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.700 kcal (2) G-P(sol) polarization free energy of solvation -73.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds