Wall clock time and date at job start Tue Mar 31 2020 16:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47198 * 1 3 3 C 1.17399 * 179.97438 * 2 1 4 4 C 1.47198 * 179.97438 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47324 * 320.61287 * 4 3 2 6 6 C 1.34777 * 120.00018 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00275 * 0.02562 * 6 5 4 8 8 C 1.50707 * 120.00134 * 179.97438 * 6 5 4 9 9 C 1.52994 * 109.47078 * 180.02562 * 8 6 5 10 10 C 1.50707 * 109.46774 * 180.02562 * 9 8 6 11 11 O 1.21283 * 120.00097 * 354.45796 * 10 9 8 12 12 N 1.34775 * 119.99667 * 174.45902 * 10 9 8 13 13 C 1.46506 * 120.00030 * 184.45100 * 12 10 9 14 14 C 1.50707 * 109.47103 * 270.00389 * 13 12 10 15 15 H 1.07998 * 119.99957 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99566 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99583 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00402 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47238 * 89.99541 * 18 16 14 20 20 H 1.48498 * 109.47115 * 210.00193 * 18 16 14 21 21 H 1.48506 * 109.46916 * 329.99775 * 18 16 14 22 22 C 1.39923 * 120.00153 * 4.45919 * 12 10 9 23 23 C 1.38872 * 120.07336 * 66.79372 * 22 12 10 24 24 C 1.38113 * 119.92646 * 179.97438 * 23 22 12 25 25 C 1.38284 * 120.07236 * 359.97313 * 24 23 22 26 26 C 1.38277 * 120.14310 * 0.04475 * 25 24 23 27 27 C 1.38117 * 120.06854 * 359.96101 * 26 25 24 28 28 H 1.09000 * 109.47259 * 39.38562 * 1 2 3 29 29 H 1.08998 * 109.46975 * 159.38568 * 1 2 3 30 30 H 1.09005 * 109.47336 * 279.38205 * 1 2 3 31 31 H 1.08998 * 109.46975 * 200.61432 * 4 3 2 32 32 H 1.09005 * 109.47336 * 80.61795 * 4 3 2 33 33 H 0.97003 * 120.00423 * 0.02562 * 5 4 3 34 34 H 1.09004 * 109.46647 * 60.00234 * 8 6 5 35 35 H 1.09001 * 109.46925 * 300.01087 * 8 6 5 36 36 H 1.08998 * 109.47255 * 60.00377 * 9 8 6 37 37 H 1.08998 * 109.47196 * 299.99859 * 9 8 6 38 38 H 1.09001 * 109.46670 * 30.00181 * 13 12 10 39 39 H 1.08996 * 109.47328 * 150.00546 * 13 12 10 40 40 H 0.97000 * 120.00347 * 180.02562 * 17 16 14 41 41 H 1.07996 * 120.03472 * 359.70196 * 23 22 12 42 42 H 1.07998 * 119.96255 * 179.97438 * 24 23 22 43 43 H 1.08010 * 119.92736 * 180.02562 * 25 24 23 44 44 H 1.07999 * 119.96673 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.03237 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1179 0.0018 0.0000 5 7 4.6073 -1.0652 0.8764 6 6 5.9325 -1.2546 1.0323 7 8 6.7200 -0.5415 0.4473 8 6 6.4359 -2.3520 1.9343 9 6 7.9659 -2.3506 1.9342 10 6 8.4692 -3.4483 2.8358 11 8 7.6863 -4.0959 3.4981 12 7 9.7894 -3.7104 2.9060 13 6 10.2706 -4.8394 3.7061 14 6 10.5439 -4.3769 5.1142 15 1 10.3756 -3.3453 5.3859 16 6 11.0078 -5.2710 6.0556 17 7 11.2458 -4.8675 7.2844 18 14 11.2982 -7.0554 5.5857 19 1 12.6933 -7.2198 5.1045 20 1 11.0782 -7.9217 6.7717 21 1 10.3537 -7.4434 4.5074 22 6 10.7005 -2.9042 2.2148 23 6 10.8802 -1.5789 2.5888 24 6 11.7807 -0.7860 1.9048 25 6 12.5033 -1.3105 0.8488 26 6 12.3263 -2.6296 0.4737 27 6 11.4273 -3.4278 1.1536 28 1 -0.3634 0.7943 -0.6521 29 1 -0.3633 -0.9619 -0.3618 30 1 -0.3634 0.1675 1.0139 31 1 4.4804 0.9640 0.3618 32 1 4.4815 -0.1654 -1.0139 33 1 3.9775 -1.6359 1.3440 34 1 6.0730 -3.3143 1.5732 35 1 6.0728 -2.1841 2.9483 36 1 8.3284 -1.3883 2.2956 37 1 8.3293 -2.5184 0.9203 38 1 9.5128 -5.6228 3.7216 39 1 11.1886 -5.2305 3.2676 40 1 11.5725 -5.4963 7.9468 41 1 10.3133 -1.1676 3.4108 42 1 11.9207 0.2448 2.1949 43 1 13.2072 -0.6884 0.3158 44 1 12.8919 -3.0362 -0.3517 45 1 11.2893 -4.4579 0.8598 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120835271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:33 Heat of formation + Delta-G solvation = 3.348072 kcal Electronic energy + Delta-G solvation = -26619.845053 eV Core-core repulsion = 22796.729943 eV Total energy + Delta-G solvation = -3823.115110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.21330 -39.60796 -38.12653 -35.86718 -34.98210 -33.82630 -32.92160 -32.40475 -30.67162 -29.90086 -29.54582 -27.98030 -26.56435 -24.66247 -22.56994 -22.36230 -21.76446 -20.50332 -18.96547 -18.06049 -17.18454 -16.94990 -16.34227 -16.11153 -16.06744 -15.56849 -15.43787 -15.20138 -14.61709 -14.27558 -14.12103 -14.06654 -13.96380 -13.73655 -13.44580 -13.37921 -13.13153 -12.88496 -12.59308 -12.40784 -12.27602 -11.93035 -11.73952 -11.33504 -11.18823 -10.90707 -10.83057 -10.66225 -10.57305 -10.36978 -10.19501 -9.86649 -9.57852 -9.39885 -9.28917 -8.65983 -8.60075 -8.59422 -7.69783 -6.09086 -4.07819 1.58304 1.68163 1.98201 2.27330 2.54166 3.18846 3.20606 3.26748 3.34103 3.36775 3.70886 3.78192 4.06468 4.38546 4.59521 4.98324 5.03468 5.05418 5.09844 5.15605 5.18535 5.20252 5.23152 5.24773 5.27902 5.34164 5.38729 5.42279 5.68234 5.71941 5.84271 5.95133 6.02619 6.06552 6.15762 6.28432 6.57209 6.67222 6.76057 6.77827 6.91861 7.09851 7.15553 7.25951 7.34496 7.57579 8.04301 8.18299 8.44117 8.81748 8.94435 9.50005 11.04255 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011740 B = 0.002808 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.494634 B = 9968.519949 C =11704.020854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C -0.159 4.159 3 C -0.209 4.209 4 C 0.237 3.763 5 N -0.733 5.733 6 C 0.518 3.482 7 O -0.537 6.537 8 C -0.124 4.124 9 C -0.123 4.123 10 C 0.515 3.485 11 O -0.529 6.529 12 N -0.556 5.556 13 C 0.218 3.782 14 C -0.526 4.526 15 H 0.075 0.925 16 C 0.073 3.927 17 N -0.896 5.896 18 Si 0.873 3.127 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.264 1.264 22 C 0.161 3.839 23 C -0.116 4.116 24 C -0.107 4.107 25 C -0.132 4.132 26 C -0.111 4.111 27 C -0.128 4.128 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.405 0.595 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.044 0.956 39 H 0.028 0.972 40 H 0.265 0.735 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.495 9.149 -17.276 23.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.160 4.160 3 C -0.210 4.210 4 C 0.115 3.885 5 N -0.387 5.387 6 C 0.306 3.694 7 O -0.413 6.413 8 C -0.164 4.164 9 C -0.164 4.164 10 C 0.303 3.697 11 O -0.405 6.405 12 N -0.283 5.283 13 C 0.099 3.901 14 C -0.564 4.564 15 H 0.094 0.906 16 C -0.129 4.129 17 N -0.534 5.534 18 Si 0.700 3.300 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.189 1.189 22 C 0.069 3.931 23 C -0.136 4.136 24 C -0.125 4.125 25 C -0.150 4.150 26 C -0.129 4.129 27 C -0.148 4.148 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.240 0.760 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.062 0.938 39 H 0.046 0.954 40 H 0.075 0.925 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.289 9.208 -17.129 23.005 hybrid contribution 0.016 -1.162 0.274 1.194 sum -12.273 8.046 -16.855 22.348 Atomic orbital electron populations 1.18947 0.84310 1.03381 1.03435 1.22513 0.93925 0.99436 1.00118 1.22149 0.93382 1.02918 1.02528 1.17988 0.82610 0.92153 0.95794 1.46050 1.07579 1.35824 1.49246 1.20868 0.81459 0.85252 0.81858 1.90718 1.55105 1.47483 1.47989 1.21390 0.96377 0.97844 1.00788 1.21418 0.94400 0.99467 1.01104 1.20407 0.81959 0.84730 0.82573 1.90680 1.54633 1.50982 1.44246 1.45599 1.04490 1.30954 1.47276 1.19799 0.94800 0.84358 0.91177 1.21246 1.44372 0.98426 0.92378 0.90644 1.24828 0.94845 0.98515 0.94747 1.69888 1.45380 1.35324 1.02808 0.86887 0.78994 0.85422 0.78701 1.20047 1.20866 1.18864 1.17677 0.93043 0.90526 0.91877 1.21359 0.99029 0.93810 0.99384 1.20987 0.96158 0.99591 0.95808 1.21068 1.00269 0.95580 0.98094 1.20935 0.98162 0.94025 0.99795 1.21247 0.97927 1.00357 0.95223 0.89823 0.89855 0.89818 0.89116 0.89161 0.76017 0.88068 0.87632 0.88218 0.88685 0.93799 0.95423 0.92543 0.85795 0.86011 0.86345 0.86131 0.85975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.20 10.32 34.37 0.35 0.15 16 2 C -0.16 -1.32 14.13 -37.12 -0.52 -1.84 16 3 C -0.21 -1.92 13.46 -37.12 -0.50 -2.42 16 4 C 0.24 2.19 6.15 -6.83 -0.04 2.14 16 5 N -0.73 -7.17 5.54 -63.16 -0.35 -7.52 16 6 C 0.52 6.46 7.83 -10.98 -0.09 6.37 16 7 O -0.54 -8.34 15.98 5.56 0.09 -8.25 16 8 C -0.12 -1.59 5.01 -27.88 -0.14 -1.73 16 9 C -0.12 -1.91 3.65 -27.88 -0.10 -2.01 16 10 C 0.52 10.35 7.53 -10.98 -0.08 10.27 16 11 O -0.53 -12.31 15.61 5.55 0.09 -12.23 16 12 N -0.56 -11.75 2.51 -114.73 -0.29 -12.04 16 13 C 0.22 5.37 4.14 -5.19 -0.02 5.35 16 14 C -0.53 -15.20 9.94 -34.44 -0.34 -15.54 16 15 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 16 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 17 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 18 Si 0.87 21.55 27.47 -169.99 -4.67 16.88 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 21 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 22 C 0.16 2.94 4.42 -83.69 -0.37 2.57 16 23 C -0.12 -1.97 8.46 -39.39 -0.33 -2.31 16 24 C -0.11 -1.52 10.04 -39.61 -0.40 -1.91 16 25 C -0.13 -1.71 10.04 -39.55 -0.40 -2.11 16 26 C -0.11 -1.48 10.04 -39.61 -0.40 -1.88 16 27 C -0.13 -2.03 9.64 -39.39 -0.38 -2.41 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.41 3.21 8.45 -40.82 -0.34 2.86 16 34 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.11 1.35 8.04 -51.93 -0.42 0.93 16 36 H 0.10 1.54 6.95 -51.93 -0.36 1.18 16 37 H 0.09 1.41 7.97 -51.93 -0.41 1.00 16 38 H 0.04 1.14 6.54 -51.93 -0.34 0.80 16 39 H 0.03 0.65 7.25 -51.93 -0.38 0.28 16 40 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.12 2.15 7.90 -52.49 -0.41 1.73 16 42 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 43 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 44 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 45 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 392.66 15.07 5.92 5.92 Total: -1.00 -36.01 392.66 -8.79 -44.80 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -6.49 Total: 4.65 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -3.86 Total: -5.28 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.14 Total: -46.49 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: 0.18 Total: -20.48 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.01 -8.79 -44.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120835271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.146 kcal (2) G-P(sol) polarization free energy of solvation -36.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds