Wall clock time and date at job start Tue Mar 31 2020 16:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47198 * 1 3 3 C 1.17399 * 179.97438 * 2 1 4 4 C 1.47198 * 179.97438 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47324 * 320.61287 * 4 3 2 6 6 C 1.34777 * 120.00018 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00275 * 0.02562 * 6 5 4 8 8 C 1.50707 * 120.00134 * 179.97438 * 6 5 4 9 9 C 1.52994 * 109.47078 * 180.02562 * 8 6 5 10 10 C 1.50707 * 109.46774 * 180.02562 * 9 8 6 11 11 O 1.21283 * 120.00097 * 354.45796 * 10 9 8 12 12 N 1.34775 * 119.99667 * 174.45902 * 10 9 8 13 13 C 1.46506 * 120.00030 * 184.45100 * 12 10 9 14 14 C 1.50707 * 109.47103 * 270.00389 * 13 12 10 15 15 H 1.07998 * 119.99957 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99566 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99583 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00402 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47238 * 89.99541 * 18 16 14 20 20 H 1.48498 * 109.47115 * 210.00193 * 18 16 14 21 21 H 1.48506 * 109.46916 * 329.99775 * 18 16 14 22 22 C 1.39923 * 120.00153 * 4.45919 * 12 10 9 23 23 C 1.38872 * 120.07336 * 66.79372 * 22 12 10 24 24 C 1.38113 * 119.92646 * 179.97438 * 23 22 12 25 25 C 1.38284 * 120.07236 * 359.97313 * 24 23 22 26 26 C 1.38277 * 120.14310 * 0.04475 * 25 24 23 27 27 C 1.38117 * 120.06854 * 359.96101 * 26 25 24 28 28 H 1.09000 * 109.47259 * 39.38562 * 1 2 3 29 29 H 1.08998 * 109.46975 * 159.38568 * 1 2 3 30 30 H 1.09005 * 109.47336 * 279.38205 * 1 2 3 31 31 H 1.08998 * 109.46975 * 200.61432 * 4 3 2 32 32 H 1.09005 * 109.47336 * 80.61795 * 4 3 2 33 33 H 0.97003 * 120.00423 * 0.02562 * 5 4 3 34 34 H 1.09004 * 109.46647 * 60.00234 * 8 6 5 35 35 H 1.09001 * 109.46925 * 300.01087 * 8 6 5 36 36 H 1.08998 * 109.47255 * 60.00377 * 9 8 6 37 37 H 1.08998 * 109.47196 * 299.99859 * 9 8 6 38 38 H 1.09001 * 109.46670 * 30.00181 * 13 12 10 39 39 H 1.08996 * 109.47328 * 150.00546 * 13 12 10 40 40 H 0.97000 * 120.00347 * 180.02562 * 17 16 14 41 41 H 1.07996 * 120.03472 * 359.70196 * 23 22 12 42 42 H 1.07998 * 119.96255 * 179.97438 * 24 23 22 43 43 H 1.08010 * 119.92736 * 180.02562 * 25 24 23 44 44 H 1.07999 * 119.96673 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.03237 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1179 0.0018 0.0000 5 7 4.6073 -1.0652 0.8764 6 6 5.9325 -1.2546 1.0323 7 8 6.7200 -0.5415 0.4473 8 6 6.4359 -2.3520 1.9343 9 6 7.9659 -2.3506 1.9342 10 6 8.4692 -3.4483 2.8358 11 8 7.6863 -4.0959 3.4981 12 7 9.7894 -3.7104 2.9060 13 6 10.2706 -4.8394 3.7061 14 6 10.5439 -4.3769 5.1142 15 1 10.3756 -3.3453 5.3859 16 6 11.0078 -5.2710 6.0556 17 7 11.2458 -4.8675 7.2844 18 14 11.2982 -7.0554 5.5857 19 1 12.6933 -7.2198 5.1045 20 1 11.0782 -7.9217 6.7717 21 1 10.3537 -7.4434 4.5074 22 6 10.7005 -2.9042 2.2148 23 6 10.8802 -1.5789 2.5888 24 6 11.7807 -0.7860 1.9048 25 6 12.5033 -1.3105 0.8488 26 6 12.3263 -2.6296 0.4737 27 6 11.4273 -3.4278 1.1536 28 1 -0.3634 0.7943 -0.6521 29 1 -0.3633 -0.9619 -0.3618 30 1 -0.3634 0.1675 1.0139 31 1 4.4804 0.9640 0.3618 32 1 4.4815 -0.1654 -1.0139 33 1 3.9775 -1.6359 1.3440 34 1 6.0730 -3.3143 1.5732 35 1 6.0728 -2.1841 2.9483 36 1 8.3284 -1.3883 2.2956 37 1 8.3293 -2.5184 0.9203 38 1 9.5128 -5.6228 3.7216 39 1 11.1886 -5.2305 3.2676 40 1 11.5725 -5.4963 7.9468 41 1 10.3133 -1.1676 3.4108 42 1 11.9207 0.2448 2.1949 43 1 13.2072 -0.6884 0.3158 44 1 12.8919 -3.0362 -0.3517 45 1 11.2893 -4.4579 0.8598 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120835271.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:32 Heat of formation + Delta-G solvation = -19.623123 kcal Electronic energy + Delta-G solvation = -26620.841159 eV Core-core repulsion = 22796.729943 eV Total energy + Delta-G solvation = -3824.111215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.58976 -40.73009 -39.48615 -36.71682 -36.57009 -34.79818 -34.53339 -33.91935 -31.83790 -31.23461 -30.48771 -29.54968 -27.53311 -25.87961 -24.20209 -23.59785 -23.21302 -21.51779 -20.39845 -19.15235 -19.07673 -18.30084 -17.47335 -17.41826 -17.22463 -16.96180 -16.49914 -16.36862 -15.97287 -15.66265 -15.44809 -14.96091 -14.87213 -14.64053 -14.45539 -14.28797 -14.25258 -14.14258 -14.05097 -13.77695 -13.67382 -13.55841 -13.15691 -13.01915 -12.54587 -12.42827 -12.20693 -12.14914 -11.95797 -11.76920 -11.40869 -11.02783 -11.00902 -10.84254 -10.78583 -10.13202 -10.11488 -9.81590 -9.21050 -8.35356 -6.40875 0.36482 0.51626 1.26330 1.30681 1.34518 1.44933 1.50601 1.62038 1.65217 2.06825 2.29446 2.49128 2.88010 2.98503 3.16548 3.45005 3.80992 3.99258 4.00762 4.09094 4.12627 4.32110 4.44705 4.47788 4.54870 4.59902 4.60590 4.65683 4.70678 4.78490 4.80836 4.82685 4.83168 4.87155 4.90215 5.05486 5.15124 5.26213 5.38607 5.39834 5.54127 5.63403 5.72690 6.06187 6.19860 6.38563 6.53920 6.58742 6.61667 7.08856 7.15350 7.27855 8.81689 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011740 B = 0.002808 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.494634 B = 9968.519949 C =11704.020854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C -0.151 4.151 3 C -0.245 4.245 4 C 0.239 3.761 5 N -0.720 5.720 6 C 0.526 3.474 7 O -0.569 6.569 8 C -0.119 4.119 9 C -0.106 4.106 10 C 0.509 3.491 11 O -0.570 6.570 12 N -0.561 5.561 13 C 0.228 3.772 14 C -0.534 4.534 15 H 0.026 0.974 16 C 0.011 3.989 17 N -0.944 5.944 18 Si 0.948 3.052 19 H -0.254 1.254 20 H -0.279 1.279 21 H -0.251 1.251 22 C 0.124 3.876 23 C -0.137 4.137 24 C -0.108 4.108 25 C -0.120 4.120 26 C -0.103 4.103 27 C -0.136 4.136 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.415 0.585 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.032 0.968 39 H 0.044 0.956 40 H 0.269 0.731 41 H 0.103 0.897 42 H 0.145 0.855 43 H 0.158 0.842 44 H 0.158 0.842 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.270 8.833 -20.140 25.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.152 4.152 3 C -0.245 4.245 4 C 0.117 3.883 5 N -0.373 5.373 6 C 0.313 3.687 7 O -0.448 6.448 8 C -0.159 4.159 9 C -0.147 4.147 10 C 0.299 3.701 11 O -0.450 6.450 12 N -0.287 5.287 13 C 0.107 3.893 14 C -0.572 4.572 15 H 0.044 0.956 16 C -0.187 4.187 17 N -0.584 5.584 18 Si 0.770 3.230 19 H -0.179 1.179 20 H -0.204 1.204 21 H -0.175 1.175 22 C 0.034 3.966 23 C -0.157 4.157 24 C -0.127 4.127 25 C -0.138 4.138 26 C -0.121 4.121 27 C -0.155 4.155 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.252 0.748 34 H 0.132 0.868 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.121 0.879 42 H 0.163 0.837 43 H 0.176 0.824 44 H 0.176 0.824 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.084 8.923 -20.025 25.033 hybrid contribution -0.083 -0.903 1.161 1.473 sum -12.167 8.020 -18.863 23.837 Atomic orbital electron populations 1.19213 0.81902 1.04738 1.04672 1.23406 0.95035 0.98016 0.98738 1.22221 0.93665 1.04531 1.04106 1.17956 0.83075 0.91655 0.95580 1.45934 1.06818 1.35774 1.48728 1.20627 0.82043 0.84633 0.81354 1.90704 1.56081 1.48605 1.49414 1.21330 0.94585 0.98858 1.01113 1.21284 0.96015 0.97200 1.00162 1.21203 0.81462 0.85014 0.82424 1.90640 1.55564 1.52701 1.46073 1.45551 1.05511 1.30583 1.47102 1.19443 0.94971 0.85411 0.89454 1.21435 1.44380 0.96388 0.95046 0.95586 1.25853 0.94344 1.04059 0.94442 1.70048 1.46657 1.37403 1.04244 0.85714 0.80063 0.78427 0.78828 1.17865 1.20397 1.17459 1.17946 0.94332 0.90857 0.93500 1.21358 1.00405 0.94079 0.99857 1.21309 0.95151 1.00437 0.95784 1.21556 0.99532 0.95822 0.96914 1.21376 0.96958 0.93915 0.99860 1.21428 0.98109 1.01162 0.94847 0.88250 0.88467 0.88584 0.89299 0.89016 0.74844 0.86850 0.87706 0.88462 0.87710 0.95026 0.93772 0.92210 0.87910 0.83697 0.82434 0.82444 0.85311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.34 10.32 70.18 0.72 0.38 16 2 C -0.15 -2.29 14.13 31.12 0.44 -1.85 16 3 C -0.24 -4.34 13.46 31.12 0.42 -3.92 16 4 C 0.24 4.36 6.15 84.57 0.52 4.88 16 5 N -0.72 -13.77 5.54 -472.13 -2.61 -16.39 16 6 C 0.53 13.05 7.83 87.66 0.69 13.74 16 7 O -0.57 -17.68 15.98 -3.03 -0.05 -17.73 16 8 C -0.12 -3.10 5.01 29.85 0.15 -2.95 16 9 C -0.11 -3.40 3.65 29.85 0.11 -3.29 16 10 C 0.51 21.35 7.53 87.66 0.66 22.01 16 11 O -0.57 -27.78 15.61 -3.04 -0.05 -27.83 16 12 N -0.56 -24.58 2.51 -635.28 -1.59 -26.17 16 13 C 0.23 11.51 4.14 85.63 0.35 11.86 16 14 C -0.53 -32.34 9.94 25.60 0.25 -32.08 16 15 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 16 C 0.01 0.66 5.47 84.65 0.46 1.13 16 17 N -0.94 -60.49 13.96 21.45 0.30 -60.19 16 18 Si 0.95 44.78 27.47 68.60 1.88 46.66 16 19 H -0.25 -11.14 7.11 99.48 0.71 -10.44 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 22 C 0.12 4.61 4.42 38.15 0.17 4.78 16 23 C -0.14 -4.78 8.46 22.39 0.19 -4.60 16 24 C -0.11 -2.91 10.04 22.25 0.22 -2.69 16 25 C -0.12 -2.68 10.04 22.29 0.22 -2.45 16 26 C -0.10 -2.40 10.04 22.25 0.22 -2.17 16 27 C -0.14 -4.12 9.64 22.39 0.22 -3.91 16 28 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.42 6.31 8.45 -92.71 -0.78 5.52 16 34 H 0.11 2.68 8.14 -2.38 -0.02 2.66 16 35 H 0.10 2.76 8.04 -2.39 -0.02 2.74 16 36 H 0.10 3.16 6.95 -2.39 -0.02 3.15 16 37 H 0.10 3.14 7.97 -2.39 -0.02 3.12 16 38 H 0.03 1.67 6.54 -2.39 -0.02 1.65 16 39 H 0.04 2.07 7.25 -2.39 -0.02 2.05 16 40 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 41 H 0.10 3.88 7.90 -2.91 -0.02 3.86 16 42 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 43 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 44 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 45 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -82.37 392.66 4.07 -78.30 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.17 Total: 24.48 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 6.02 Total: -1.13 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -3.91 Total: -102.75 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -0.10 Total: -45.56 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.66 kcal Total: -82.37 4.07 -78.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120835271.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.674 kcal (2) G-P(sol) polarization free energy of solvation -82.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds