Wall clock time and date at job start Tue Mar 31 2020 15:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46885 * 2 1 4 4 C 1.53007 * 109.47138 * 119.99558 * 2 1 3 5 5 C 1.52998 * 109.47014 * 295.00134 * 4 2 1 6 6 C 1.47191 * 109.46824 * 55.00414 * 4 2 1 7 7 N 3.43550 * 81.12824 * 156.39382 * 2 1 3 8 8 N 1.46500 * 109.46992 * 175.00340 * 4 2 1 9 9 C 1.34770 * 120.00149 * 179.97438 * 8 4 2 10 10 O 1.21722 * 119.99697 * 0.02562 * 9 8 4 11 11 C 1.46250 * 120.00046 * 179.97438 * 9 8 4 12 12 C 1.35031 * 119.99722 * 180.02562 * 11 9 8 13 13 C 1.46959 * 119.99896 * 180.27394 * 12 11 9 14 14 C 1.40027 * 120.10017 * 359.45143 * 13 12 11 15 15 C 1.37601 * 119.89863 * 179.78912 * 14 13 12 16 16 C 1.39178 * 120.09610 * 0.48118 * 15 14 13 17 17 O 1.35575 * 119.89259 * 179.76441 * 16 15 14 18 18 C 1.34788 * 116.99533 * 174.42515 * 17 16 15 19 19 H 1.08001 * 120.00124 * 5.05799 * 18 17 16 20 20 C 1.38720 * 119.99795 * 185.06035 * 18 17 16 21 21 N 1.31507 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 119.99984 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.47362 * 59.99753 * 22 20 18 24 24 H 1.48503 * 109.47455 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47353 * 299.99834 * 22 20 18 26 26 C 1.39170 * 120.20621 * 359.74800 * 16 15 14 27 27 C 1.37600 * 120.10262 * 0.02562 * 26 16 15 28 28 H 1.09000 * 109.46990 * 300.00151 * 1 2 3 29 29 H 1.08994 * 109.47426 * 60.00129 * 1 2 3 30 30 H 1.09006 * 109.46786 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47173 * 240.00145 * 2 1 3 32 32 H 1.09001 * 109.47104 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46674 * 299.99522 * 3 2 1 34 34 H 1.09000 * 109.47398 * 59.99564 * 3 2 1 35 35 H 1.08999 * 109.47228 * 300.00043 * 5 4 2 36 36 H 1.09008 * 109.47224 * 60.00228 * 5 4 2 37 37 H 1.09001 * 109.46823 * 179.97438 * 5 4 2 38 38 H 0.96999 * 119.99522 * 359.97438 * 8 4 2 39 39 H 1.07990 * 120.00180 * 359.97438 * 11 9 8 40 40 H 1.08000 * 120.00105 * 359.97438 * 12 11 9 41 41 H 1.08005 * 120.04944 * 359.97438 * 14 13 12 42 42 H 1.07995 * 119.95289 * 180.22906 * 15 14 13 43 43 H 0.97004 * 119.99419 * 180.02562 * 21 20 18 44 44 H 1.07998 * 119.95118 * 179.97438 * 26 16 15 45 45 H 1.07997 * 120.05056 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 0.0691 2.4953 6 6 1.4532 -2.0696 1.3113 7 7 1.0002 -3.1104 1.3593 8 7 3.5001 -0.8262 1.1907 9 6 4.1732 -1.4280 2.1913 10 8 3.5679 -1.8846 3.1435 11 6 5.6307 -1.5333 2.1324 12 6 6.3049 -2.1367 3.1347 13 6 7.7700 -2.2373 3.0785 14 6 8.4680 -1.7183 1.9811 15 6 9.8401 -1.8108 1.9348 16 6 10.5333 -2.4280 2.9719 17 8 11.8849 -2.5212 2.9197 18 6 12.5058 -3.0249 4.0049 19 1 11.9244 -3.4082 4.8304 20 6 13.8916 -3.0510 4.0613 21 7 14.5995 -2.5847 3.0559 22 14 14.7521 -3.7484 5.5654 23 1 14.3588 -5.1689 5.7465 24 1 16.2228 -3.6624 5.3787 25 1 14.3587 -2.9689 6.7666 26 6 9.8435 -2.9495 4.0623 27 6 8.4718 -2.8575 4.1194 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9565 0.8899 35 1 2.0698 1.0676 2.4494 36 1 0.5489 0.1473 2.5390 37 1 1.9982 -0.4450 3.3854 38 1 3.9823 -0.4626 0.4316 39 1 6.1676 -1.1293 1.2870 40 1 5.7680 -2.5411 3.9800 41 1 7.9303 -1.2434 1.1737 42 1 10.3795 -1.4076 1.0906 43 1 15.5685 -2.6033 3.0953 44 1 10.3856 -3.4280 4.8645 45 1 7.9374 -3.2621 4.9662 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122234857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:11 Heat of formation + Delta-G solvation = -0.636333 kcal Electronic energy + Delta-G solvation = -26076.180961 eV Core-core repulsion = 22252.893074 eV Total energy + Delta-G solvation = -3823.287886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.61546 -39.22949 -38.12320 -36.88369 -35.84687 -33.61952 -33.25445 -32.33426 -30.46901 -30.18126 -28.19365 -27.74740 -25.90471 -25.47333 -23.21816 -22.19585 -21.29061 -20.75616 -19.35006 -18.25056 -18.00433 -17.28477 -17.06989 -16.41796 -15.21788 -14.95277 -14.84691 -14.67238 -14.46025 -14.34121 -14.15603 -13.85859 -13.66442 -13.54258 -13.42616 -13.06428 -12.86990 -12.75376 -12.62432 -12.46711 -12.38855 -11.96664 -11.88653 -11.80271 -11.76119 -11.60441 -11.45375 -11.12953 -11.11208 -11.10102 -10.73058 -10.56873 -9.80831 -9.65234 -9.54126 -9.51395 -8.88911 -8.41362 -7.15505 -6.67806 -4.22536 0.99651 2.10825 2.29507 2.48942 2.59596 3.02616 3.03645 3.06572 3.24060 3.36987 3.67432 3.80257 4.09964 4.31092 4.47837 4.58830 4.76342 4.86763 4.89693 5.01024 5.03363 5.15026 5.22325 5.25386 5.33350 5.38261 5.43459 5.49939 5.54324 5.56227 5.63229 5.67199 5.76614 5.97813 6.01239 6.07802 6.13774 6.40727 6.43612 6.56591 6.75633 6.88336 7.09513 7.20015 7.23970 7.33312 7.40803 7.60752 7.77366 8.17556 8.76771 9.43215 10.48566 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.032112 B = 0.001842 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.745336 B =15198.014802 C =15657.989719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.094 4.094 3 C -0.151 4.151 4 C 0.283 3.717 5 C -0.167 4.167 6 C 0.209 3.791 7 N -0.419 5.419 8 N -0.725 5.725 9 C 0.558 3.442 10 O -0.545 6.545 11 C -0.287 4.287 12 C 0.045 3.955 13 C -0.201 4.201 14 C -0.041 4.041 15 C -0.200 4.200 16 C 0.167 3.833 17 O -0.161 6.161 18 C -0.393 4.393 19 H 0.097 0.903 20 C 0.042 3.958 21 N -0.851 5.851 22 Si 0.945 3.055 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.267 1.267 26 C -0.243 4.243 27 C -0.033 4.033 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.408 0.592 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.275 0.725 44 H 0.131 0.869 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.100 9.132 -5.468 23.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.114 4.114 3 C -0.208 4.208 4 C 0.193 3.807 5 C -0.226 4.226 6 C -0.112 4.112 7 N -0.095 5.095 8 N -0.379 5.379 9 C 0.351 3.649 10 O -0.425 6.425 11 C -0.308 4.308 12 C 0.025 3.975 13 C -0.203 4.203 14 C -0.060 4.060 15 C -0.219 4.219 16 C 0.111 3.889 17 O -0.062 6.062 18 C -0.469 4.469 19 H 0.114 0.886 20 C -0.165 4.165 21 N -0.483 5.483 22 Si 0.769 3.231 23 H -0.192 1.192 24 H -0.201 1.201 25 H -0.192 1.192 26 C -0.262 4.262 27 C -0.052 4.052 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.245 0.755 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.085 0.915 44 H 0.149 0.851 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -21.721 7.316 -4.962 23.451 hybrid contribution 0.934 0.079 0.309 0.987 sum -20.787 7.395 -4.653 22.549 Atomic orbital electron populations 1.21934 0.93475 1.02498 1.03113 1.21374 0.97325 0.97168 0.95507 1.21951 1.01640 0.94176 1.03041 1.17611 0.80512 0.84077 0.98519 1.22368 1.02350 1.00624 0.97225 1.29254 0.93975 0.94842 0.93080 1.81142 1.08737 1.11217 1.08368 1.46006 1.04824 1.62041 1.25040 1.18519 0.88564 0.76357 0.81444 1.90784 1.70314 1.48026 1.33337 1.22341 0.91534 1.13080 1.03823 1.22308 0.92527 0.87548 0.95113 1.18444 0.91524 1.11596 0.98692 1.20878 0.92938 0.96034 0.96111 1.20153 0.93530 1.07819 1.00410 1.19620 0.84771 0.91502 0.93054 1.83904 1.13626 1.69384 1.39245 1.21439 0.89753 1.40160 0.95536 0.88554 1.25400 0.95385 0.96648 0.99020 1.70004 1.07284 1.40875 1.30182 0.85711 0.78298 0.79480 0.79634 1.19242 1.20058 1.19215 1.21098 0.94280 1.09354 1.01447 1.20994 0.93573 0.94462 0.96162 0.91446 0.91291 0.92536 0.89574 0.91844 0.91579 0.91342 0.89984 0.90918 0.89381 0.75504 0.85657 0.85933 0.86363 0.86098 0.91505 0.85114 0.86815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 8.62 37.16 0.32 -0.44 16 2 C -0.09 -0.48 2.30 -90.61 -0.21 -0.69 16 3 C -0.15 -0.52 8.58 37.16 0.32 -0.20 16 4 C 0.28 2.36 0.49 -134.61 -0.07 2.30 16 5 C -0.17 -1.32 7.62 37.16 0.28 -1.03 16 6 C 0.21 2.55 11.25 -20.76 -0.23 2.31 16 7 N -0.42 -6.29 18.54 42.16 0.78 -5.51 16 8 N -0.72 -6.33 4.81 -51.66 -0.25 -6.58 16 9 C 0.56 7.06 7.15 -13.04 -0.09 6.97 16 10 O -0.55 -8.77 13.43 5.17 0.07 -8.71 16 11 C -0.29 -3.60 9.41 -37.50 -0.35 -3.95 16 12 C 0.04 0.65 9.45 -37.19 -0.35 0.30 16 13 C -0.20 -3.32 5.87 -105.03 -0.62 -3.94 16 14 C -0.04 -0.68 9.40 -39.14 -0.37 -1.05 16 15 C -0.20 -3.89 9.97 -39.47 -0.39 -4.28 16 16 C 0.17 3.78 6.66 -38.89 -0.26 3.52 16 17 O -0.16 -4.31 9.74 0.70 0.01 -4.30 16 18 C -0.39 -10.33 9.48 30.91 0.29 -10.04 16 19 H 0.10 2.32 5.18 -52.49 -0.27 2.05 16 20 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 21 N -0.85 -23.56 13.67 55.48 0.76 -22.80 16 22 Si 0.94 19.33 29.55 -169.99 -5.02 14.30 16 23 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 24 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 25 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 26 C -0.24 -4.94 9.14 -39.47 -0.36 -5.30 16 27 C -0.03 -0.59 9.78 -39.15 -0.38 -0.97 16 28 H 0.07 0.29 6.56 -51.93 -0.34 -0.05 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.38 7.09 -51.93 -0.37 0.01 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.20 7.18 -51.93 -0.37 -0.17 16 33 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.07 0.23 6.35 -51.93 -0.33 -0.10 16 35 H 0.08 0.49 6.34 -51.93 -0.33 0.16 16 36 H 0.07 0.46 6.57 -51.92 -0.34 0.12 16 37 H 0.09 0.98 6.16 -51.93 -0.32 0.66 16 38 H 0.41 2.33 7.63 -40.82 -0.31 2.02 16 39 H 0.13 1.30 6.06 -52.49 -0.32 0.98 16 40 H 0.12 1.79 7.52 -52.49 -0.39 1.40 16 41 H 0.12 1.53 6.16 -52.48 -0.32 1.21 16 42 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 43 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.13 2.64 5.62 -52.49 -0.29 2.34 16 45 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 375.01 15.07 5.65 5.65 Total: -1.00 -32.35 375.01 -6.14 -38.49 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.56 Total: 4.95 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -2.57 Total: -15.50 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 1.29 Total: -34.89 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -13.01 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.35 -6.14 -38.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122234857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.850 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds