Wall clock time and date at job start Tue Mar 31 2020 15:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46885 * 2 1 4 4 C 1.53007 * 109.47138 * 119.99558 * 2 1 3 5 5 C 1.52998 * 109.47014 * 295.00134 * 4 2 1 6 6 C 1.47191 * 109.46824 * 55.00414 * 4 2 1 7 7 N 3.43550 * 81.12824 * 156.39382 * 2 1 3 8 8 N 1.46500 * 109.46992 * 175.00340 * 4 2 1 9 9 C 1.34770 * 120.00149 * 179.97438 * 8 4 2 10 10 O 1.21722 * 119.99697 * 0.02562 * 9 8 4 11 11 C 1.46250 * 120.00046 * 179.97438 * 9 8 4 12 12 C 1.35031 * 119.99722 * 180.02562 * 11 9 8 13 13 C 1.46959 * 119.99896 * 180.27394 * 12 11 9 14 14 C 1.40027 * 120.10017 * 359.45143 * 13 12 11 15 15 C 1.37601 * 119.89863 * 179.78912 * 14 13 12 16 16 C 1.39178 * 120.09610 * 0.48118 * 15 14 13 17 17 O 1.35575 * 119.89259 * 179.76441 * 16 15 14 18 18 C 1.34788 * 116.99533 * 174.42515 * 17 16 15 19 19 H 1.08001 * 120.00124 * 5.05799 * 18 17 16 20 20 C 1.38720 * 119.99795 * 185.06035 * 18 17 16 21 21 N 1.31507 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 119.99984 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.47362 * 59.99753 * 22 20 18 24 24 H 1.48503 * 109.47455 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47353 * 299.99834 * 22 20 18 26 26 C 1.39170 * 120.20621 * 359.74800 * 16 15 14 27 27 C 1.37600 * 120.10262 * 0.02562 * 26 16 15 28 28 H 1.09000 * 109.46990 * 300.00151 * 1 2 3 29 29 H 1.08994 * 109.47426 * 60.00129 * 1 2 3 30 30 H 1.09006 * 109.46786 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47173 * 240.00145 * 2 1 3 32 32 H 1.09001 * 109.47104 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46674 * 299.99522 * 3 2 1 34 34 H 1.09000 * 109.47398 * 59.99564 * 3 2 1 35 35 H 1.08999 * 109.47228 * 300.00043 * 5 4 2 36 36 H 1.09008 * 109.47224 * 60.00228 * 5 4 2 37 37 H 1.09001 * 109.46823 * 179.97438 * 5 4 2 38 38 H 0.96999 * 119.99522 * 359.97438 * 8 4 2 39 39 H 1.07990 * 120.00180 * 359.97438 * 11 9 8 40 40 H 1.08000 * 120.00105 * 359.97438 * 12 11 9 41 41 H 1.08005 * 120.04944 * 359.97438 * 14 13 12 42 42 H 1.07995 * 119.95289 * 180.22906 * 15 14 13 43 43 H 0.97004 * 119.99419 * 180.02562 * 21 20 18 44 44 H 1.07998 * 119.95118 * 179.97438 * 26 16 15 45 45 H 1.07997 * 120.05056 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 0.0691 2.4953 6 6 1.4532 -2.0696 1.3113 7 7 1.0002 -3.1104 1.3593 8 7 3.5001 -0.8262 1.1907 9 6 4.1732 -1.4280 2.1913 10 8 3.5679 -1.8846 3.1435 11 6 5.6307 -1.5333 2.1324 12 6 6.3049 -2.1367 3.1347 13 6 7.7700 -2.2373 3.0785 14 6 8.4680 -1.7183 1.9811 15 6 9.8401 -1.8108 1.9348 16 6 10.5333 -2.4280 2.9719 17 8 11.8849 -2.5212 2.9197 18 6 12.5058 -3.0249 4.0049 19 1 11.9244 -3.4082 4.8304 20 6 13.8916 -3.0510 4.0613 21 7 14.5995 -2.5847 3.0559 22 14 14.7521 -3.7484 5.5654 23 1 14.3588 -5.1689 5.7465 24 1 16.2228 -3.6624 5.3787 25 1 14.3587 -2.9689 6.7666 26 6 9.8435 -2.9495 4.0623 27 6 8.4718 -2.8575 4.1194 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9565 0.8899 35 1 2.0698 1.0676 2.4494 36 1 0.5489 0.1473 2.5390 37 1 1.9982 -0.4450 3.3854 38 1 3.9823 -0.4626 0.4316 39 1 6.1676 -1.1293 1.2870 40 1 5.7680 -2.5411 3.9800 41 1 7.9303 -1.2434 1.1737 42 1 10.3795 -1.4076 1.0906 43 1 15.5685 -2.6033 3.0953 44 1 10.3856 -3.4280 4.8645 45 1 7.9374 -3.2621 4.9662 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122234857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:10 Heat of formation + Delta-G solvation = -21.141381 kcal Electronic energy + Delta-G solvation = -26077.070126 eV Core-core repulsion = 22252.893074 eV Total energy + Delta-G solvation = -3824.177052 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.49533 -40.81089 -39.08610 -38.38557 -36.79689 -34.74363 -34.40044 -33.95635 -31.95673 -30.94596 -29.48368 -28.09064 -27.52107 -26.40870 -24.46126 -23.67311 -22.28158 -21.66328 -20.54623 -19.73174 -19.01726 -18.65699 -18.28959 -17.16072 -16.47687 -16.43640 -15.99146 -15.88041 -15.63060 -15.54288 -15.27103 -15.08010 -14.91870 -14.60389 -14.35982 -14.10873 -13.96155 -13.68849 -13.59890 -13.44208 -13.30975 -13.18039 -13.09943 -13.01812 -12.67883 -12.56086 -12.32260 -12.23247 -12.14819 -12.03290 -11.93938 -11.52729 -11.21062 -11.10201 -10.85534 -10.58430 -10.38349 -9.87997 -8.67633 -8.51834 -6.17870 -0.25076 0.59810 1.11770 1.35793 1.39714 1.47094 1.51285 1.67483 2.15530 2.28665 2.36320 2.80676 2.88507 3.18847 3.43626 3.54049 3.76438 3.83979 3.95824 4.09610 4.20234 4.27054 4.32510 4.37130 4.48626 4.54543 4.67039 4.68616 4.83320 4.91347 4.95980 4.96140 5.03209 5.11452 5.15951 5.20514 5.24522 5.28890 5.32743 5.36933 5.45668 5.59102 5.60207 5.64964 5.82143 5.97743 6.11780 6.42355 6.55330 6.92508 7.21727 7.69606 8.69855 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.032112 B = 0.001842 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.745336 B =15198.014802 C =15657.989719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.085 4.085 3 C -0.150 4.150 4 C 0.279 3.721 5 C -0.166 4.166 6 C 0.225 3.775 7 N -0.476 5.476 8 N -0.704 5.704 9 C 0.552 3.448 10 O -0.579 6.579 11 C -0.243 4.243 12 C 0.016 3.984 13 C -0.171 4.171 14 C -0.035 4.035 15 C -0.207 4.207 16 C 0.129 3.871 17 O -0.219 6.219 18 C -0.417 4.417 19 H 0.105 0.895 20 C -0.018 4.018 21 N -0.913 5.913 22 Si 1.017 2.983 23 H -0.258 1.258 24 H -0.271 1.271 25 H -0.257 1.257 26 C -0.250 4.250 27 C -0.042 4.042 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.033 0.967 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.428 0.572 39 H 0.159 0.841 40 H 0.121 0.879 41 H 0.165 0.835 42 H 0.124 0.876 43 H 0.275 0.725 44 H 0.123 0.877 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.448 11.041 -6.372 27.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.105 4.105 3 C -0.207 4.207 4 C 0.189 3.811 5 C -0.224 4.224 6 C -0.094 4.094 7 N -0.153 5.153 8 N -0.359 5.359 9 C 0.344 3.656 10 O -0.460 6.460 11 C -0.264 4.264 12 C -0.004 4.004 13 C -0.171 4.171 14 C -0.053 4.053 15 C -0.226 4.226 16 C 0.077 3.923 17 O -0.124 6.124 18 C -0.493 4.493 19 H 0.122 0.878 20 C -0.217 4.217 21 N -0.549 5.549 22 Si 0.836 3.164 23 H -0.183 1.183 24 H -0.196 1.196 25 H -0.181 1.181 26 C -0.270 4.270 27 C -0.060 4.060 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.052 0.948 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.125 0.875 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.268 0.732 39 H 0.177 0.823 40 H 0.139 0.861 41 H 0.182 0.818 42 H 0.142 0.858 43 H 0.084 0.916 44 H 0.141 0.859 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -25.152 9.250 -5.899 27.440 hybrid contribution 1.229 -0.366 0.432 1.353 sum -23.922 8.884 -5.467 26.098 Atomic orbital electron populations 1.21972 0.93395 1.01413 1.04425 1.21408 0.97304 0.98064 0.93731 1.21981 1.02147 0.92563 1.03996 1.18074 0.79894 0.82415 1.00724 1.22378 1.03496 1.01231 0.95299 1.30079 0.92787 0.95226 0.91325 1.81152 1.10549 1.13170 1.10418 1.45845 1.05164 1.60351 1.24501 1.18639 0.88741 0.76481 0.81733 1.90806 1.70965 1.49317 1.34938 1.22740 0.91672 1.08842 1.03121 1.22166 0.91146 0.90415 0.96668 1.18772 0.92701 1.08189 0.97484 1.21315 0.91633 0.95178 0.97134 1.20449 0.94970 1.07386 0.99762 1.20213 0.84141 0.93001 0.94943 1.83886 1.15488 1.72855 1.40182 1.21841 0.90485 1.40820 0.96157 0.87824 1.26588 0.95865 0.97024 1.02212 1.70139 1.07371 1.44536 1.32883 0.84664 0.76989 0.79003 0.75723 1.18255 1.19551 1.18130 1.21190 0.95583 1.09373 1.00816 1.21309 0.92444 0.94613 0.97667 0.90742 0.89502 0.94770 0.88747 0.91042 0.90207 0.90938 0.87476 0.89540 0.92586 0.73218 0.82342 0.86107 0.81758 0.85767 0.91589 0.85942 0.84118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.62 71.98 0.62 -0.42 16 2 C -0.09 -0.52 2.30 -10.79 -0.02 -0.55 16 3 C -0.15 -0.27 8.58 71.98 0.62 0.35 16 4 C 0.28 3.72 0.49 1.80 0.00 3.72 16 5 C -0.17 -2.10 7.62 71.98 0.55 -1.55 16 6 C 0.23 5.10 11.25 89.44 1.01 6.11 16 7 N -0.48 -14.02 18.54 20.00 0.37 -13.65 16 8 N -0.70 -9.15 4.81 -435.57 -2.09 -11.24 16 9 C 0.55 11.78 7.15 86.33 0.62 12.40 16 10 O -0.58 -17.25 13.43 -4.42 -0.06 -17.31 16 11 C -0.24 -4.85 9.41 23.62 0.22 -4.62 16 12 C 0.02 0.40 9.45 23.82 0.23 0.62 16 13 C -0.17 -5.09 5.87 -20.13 -0.12 -5.21 16 14 C -0.03 -1.03 9.40 22.55 0.21 -0.82 16 15 C -0.21 -7.96 9.97 22.34 0.22 -7.73 16 16 C 0.13 6.06 6.66 22.72 0.15 6.21 16 17 O -0.22 -12.57 9.74 -20.39 -0.20 -12.77 16 18 C -0.42 -23.37 9.48 67.94 0.64 -22.72 16 19 H 0.10 5.31 5.18 -2.91 -0.02 5.30 16 20 C -0.02 -0.99 5.49 84.86 0.47 -0.52 16 21 N -0.91 -53.98 13.67 21.62 0.30 -53.69 16 22 Si 1.02 41.35 29.55 68.60 2.03 43.38 16 23 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 24 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 25 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 26 C -0.25 -10.42 9.14 22.34 0.20 -10.21 16 27 C -0.04 -1.42 9.78 22.55 0.22 -1.20 16 28 H 0.07 0.40 6.56 -2.39 -0.02 0.38 16 29 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.03 0.39 7.09 -2.38 -0.02 0.38 16 31 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.07 0.04 7.18 -2.39 -0.02 0.02 16 33 H 0.08 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.07 0.11 6.35 -2.39 -0.02 0.09 16 35 H 0.11 0.82 6.34 -2.39 -0.02 0.80 16 36 H 0.09 0.85 6.57 -2.38 -0.02 0.84 16 37 H 0.06 1.13 6.16 -2.39 -0.01 1.11 16 38 H 0.43 2.40 7.63 -92.71 -0.71 1.69 16 39 H 0.16 2.12 6.06 -2.92 -0.02 2.10 16 40 H 0.12 3.19 7.52 -2.91 -0.02 3.17 16 41 H 0.17 3.25 6.16 -2.91 -0.02 3.23 16 42 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 43 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 44 H 0.12 5.19 5.62 -2.91 -0.02 5.17 16 45 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -78.55 375.01 6.52 -72.03 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.34 Total: 19.37 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 5.84 Total: -26.13 kcal Atomic # 7 Polarization: -77.15 SS G_CDS: -1.43 Total: -78.58 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.26 Total: -30.08 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -78.55 6.52 -72.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122234857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.892 kcal (2) G-P(sol) polarization free energy of solvation -78.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds