Wall clock time and date at job start Tue Mar 31 2020 15:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47367 * 2 1 4 4 C 1.53005 * 109.46884 * 64.99704 * 3 2 1 5 5 C 1.52996 * 109.46837 * 185.00314 * 4 3 2 6 6 C 1.50695 * 109.47272 * 184.99868 * 3 2 1 7 7 C 1.41239 * 126.70245 * 274.71130 * 6 3 2 8 8 C 1.36879 * 103.84371 * 179.85995 * 7 6 3 9 9 C 1.47434 * 126.94648 * 180.11041 * 8 7 6 10 10 O 1.21595 * 120.00105 * 0.32129 * 9 8 7 11 11 N 1.34779 * 119.99715 * 180.32408 * 9 8 7 12 12 C 1.39068 * 120.00019 * 175.71465 * 11 9 8 13 13 C 1.39525 * 119.83462 * 215.03291 * 12 11 9 14 14 C 1.36357 * 120.16370 * 179.75604 * 13 12 11 15 15 C 1.40892 * 119.82773 * 0.54070 * 14 13 12 16 16 C 1.41116 * 120.15681 * 179.69283 * 15 14 13 17 17 H 1.07998 * 120.00017 * 214.80427 * 16 15 14 18 18 C 1.39925 * 119.99995 * 34.80975 * 16 15 14 19 19 N 1.30859 * 120.00157 * 355.55572 * 18 16 15 20 20 Si 1.86803 * 119.99887 * 175.55681 * 18 16 15 21 21 H 1.48500 * 109.47115 * 89.99717 * 20 18 16 22 22 H 1.48499 * 109.47011 * 209.99860 * 20 18 16 23 23 H 1.48503 * 109.47269 * 329.99732 * 20 18 16 24 24 C 1.40882 * 119.67979 * 359.71657 * 15 14 13 25 25 C 1.36351 * 119.83332 * 359.97438 * 24 15 14 26 26 O 1.34655 * 106.10372 * 0.39713 * 8 7 6 27 27 N 1.20887 * 111.46095 * 359.72787 * 26 8 7 28 28 H 1.09002 * 109.47652 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47602 * 300.00292 * 1 2 3 30 30 H 1.08999 * 109.47216 * 59.99954 * 1 2 3 31 31 H 1.09001 * 109.47347 * 240.00195 * 2 1 3 32 32 H 1.08999 * 109.47216 * 120.00046 * 2 1 3 33 33 H 1.08997 * 109.46765 * 305.00291 * 3 2 1 34 34 H 1.09003 * 109.47054 * 305.00118 * 4 3 2 35 35 H 1.09005 * 109.46885 * 65.00371 * 4 3 2 36 36 H 1.09003 * 109.47139 * 299.99752 * 5 4 3 37 37 H 1.08994 * 109.47647 * 59.99947 * 5 4 3 38 38 H 1.09007 * 109.47349 * 180.02562 * 5 4 3 39 39 H 1.08002 * 128.07340 * 0.02562 * 7 6 3 40 40 H 0.96997 * 119.99904 * 355.70863 * 11 9 8 41 41 H 1.07995 * 119.92046 * 0.02562 * 13 12 11 42 42 H 1.07998 * 120.08799 * 180.25986 * 14 13 12 43 43 H 0.96997 * 119.99941 * 180.02562 * 19 18 16 44 44 H 1.08001 * 120.08226 * 179.97438 * 24 15 14 45 45 H 1.07999 * 119.91782 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 1.3074 5 6 2.0353 3.6024 1.2559 6 6 3.5419 1.4443 -0.1238 7 6 4.4757 1.3195 0.9284 8 6 5.6892 1.3768 0.2978 9 6 7.0198 1.2923 0.9271 10 8 7.1151 1.1511 2.1311 11 7 8.1306 1.3717 0.1679 12 6 9.3846 1.3818 0.7692 13 6 10.4140 2.1434 0.2151 14 6 11.6447 2.1621 0.8019 15 6 11.8785 1.4006 1.9640 16 6 13.1514 1.4097 2.5733 17 1 13.5307 0.5153 3.0448 18 6 13.9219 2.5777 2.5666 19 7 13.5012 3.6354 1.9211 20 14 15.5511 2.6271 3.4792 21 1 16.6422 2.1985 2.5676 22 1 15.8135 4.0111 3.9490 23 1 15.4927 1.7108 4.6464 24 6 10.8357 0.6298 2.5146 25 6 9.6085 0.6260 1.9204 26 8 5.4221 1.5324 -1.0128 27 7 4.2317 1.5667 -1.2205 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6053 1.9815 -0.8418 34 1 0.5562 2.0471 1.4401 35 1 2.1407 1.6419 2.1427 36 1 3.1143 3.6819 1.1232 37 1 1.5298 4.0870 0.4206 38 1 1.7473 4.0897 2.1874 39 1 4.2783 1.2031 1.9838 40 1 8.0554 1.4218 -0.7978 41 1 10.2344 2.7231 -0.6782 42 1 12.4394 2.7553 0.3744 43 1 14.0355 4.4450 1.9162 44 1 11.0079 0.0434 3.4050 45 1 8.8082 0.0353 2.3410 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131594787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:06 Heat of formation + Delta-G solvation = 28.592452 kcal Electronic energy + Delta-G solvation = -26644.819809 eV Core-core repulsion = 22822.799378 eV Total energy + Delta-G solvation = -3822.020431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.06701 -39.75409 -37.88788 -37.34531 -34.66851 -33.39314 -33.07995 -32.08888 -31.87111 -29.66082 -28.95574 -27.35334 -25.58913 -23.77300 -23.38363 -22.93642 -21.62521 -21.10559 -20.58386 -19.49455 -18.25191 -17.77707 -17.35856 -16.61432 -16.12717 -15.26847 -15.23245 -15.00427 -14.69862 -14.52692 -14.34965 -13.97209 -13.90849 -13.51678 -13.08408 -12.90671 -12.71542 -12.40231 -12.22056 -12.11113 -11.79751 -11.73123 -11.67399 -11.47509 -11.43672 -11.21953 -11.09611 -11.00046 -10.83081 -10.79335 -10.24301 -10.15119 -9.75752 -9.65878 -9.54772 -9.32329 -9.01082 -7.62182 -6.96291 -6.68282 -4.40701 0.80478 1.94102 2.55114 2.70613 3.03626 3.04594 3.07411 3.12098 3.37147 3.52894 3.76881 3.93642 4.26821 4.52064 4.63740 4.68430 4.73767 4.88209 4.98499 4.99889 5.07782 5.14481 5.33086 5.37112 5.41899 5.51412 5.58676 5.60049 5.68680 5.75602 5.84688 5.88113 5.97633 6.02188 6.13916 6.34538 6.60350 6.80502 6.98703 7.10189 7.21022 7.56388 7.59953 7.70955 7.96078 8.01585 8.14003 8.23987 8.43231 8.59062 8.85953 8.91627 10.22403 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.031566 B = 0.002072 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.821780 B =13512.156842 C =13560.030918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.009 4.009 4 C -0.119 4.119 5 C -0.156 4.156 6 C 0.022 3.978 7 C -0.157 4.157 8 C -0.068 4.068 9 C 0.583 3.417 10 O -0.504 6.504 11 N -0.628 5.628 12 C -0.007 4.007 13 C -0.113 4.113 14 C -0.142 4.142 15 C 0.103 3.897 16 C -0.457 4.457 17 H 0.077 0.923 18 C 0.069 3.931 19 N -0.808 5.808 20 Si 0.917 3.083 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.263 1.263 24 C -0.206 4.206 25 C -0.081 4.081 26 O 0.111 5.889 27 N -0.350 5.350 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.180 0.820 40 H 0.403 0.597 41 H 0.094 0.906 42 H 0.134 0.866 43 H 0.279 0.721 44 H 0.098 0.902 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.167 -2.438 -4.410 20.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.028 4.028 4 C -0.157 4.157 5 C -0.213 4.213 6 C -0.136 4.136 7 C -0.179 4.179 8 C -0.134 4.134 9 C 0.366 3.634 10 O -0.380 6.380 11 N -0.269 5.269 12 C -0.100 4.100 13 C -0.133 4.133 14 C -0.162 4.162 15 C 0.100 3.900 16 C -0.488 4.488 17 H 0.096 0.904 18 C -0.147 4.147 19 N -0.435 5.435 20 Si 0.741 3.259 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.187 1.187 24 C -0.226 4.226 25 C -0.101 4.101 26 O 0.040 5.960 27 N -0.052 5.052 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.197 0.803 40 H 0.238 0.762 41 H 0.112 0.888 42 H 0.151 0.849 43 H 0.090 0.910 44 H 0.116 0.884 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -20.338 -2.120 -4.883 21.023 hybrid contribution 0.674 0.210 0.710 1.001 sum -19.665 -1.910 -4.173 20.193 Atomic orbital electron populations 1.21822 0.95028 1.01988 1.02120 1.21558 0.96268 0.94829 1.02849 1.19692 0.85526 0.97622 0.99958 1.21659 1.01808 0.95984 0.96244 1.21814 1.01894 0.95763 1.01826 1.23512 0.98654 1.02966 0.88442 1.22746 0.89430 1.03769 1.02001 1.24523 0.97618 1.07228 0.84027 1.16577 0.80952 0.79611 0.86211 1.90864 1.84745 1.49420 1.12936 1.42825 1.04635 1.69800 1.09676 1.17213 0.83651 1.07850 1.01239 1.20327 0.94047 0.98777 1.00160 1.21210 0.95958 1.03073 0.95988 1.17763 0.92521 0.89903 0.89781 1.19531 1.00170 0.97443 1.31635 0.90450 1.25915 0.99090 0.95188 0.94477 1.69749 1.37044 1.02658 1.34014 0.86172 0.81083 0.78340 0.80269 1.19460 1.20254 1.18662 1.20799 0.92859 1.07525 1.01440 1.20396 0.96850 0.97712 0.95169 1.84973 1.19412 1.66598 1.25004 1.73706 0.89325 1.17905 1.24217 0.92413 0.92141 0.92589 0.91643 0.91263 0.89270 0.90514 0.91170 0.92634 0.92719 0.92312 0.80267 0.76247 0.88785 0.84876 0.90995 0.88391 0.87393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.67 37.15 0.36 -0.52 16 2 C -0.12 -0.88 5.38 -26.73 -0.14 -1.02 16 3 C -0.01 -0.07 2.33 -91.77 -0.21 -0.29 16 4 C -0.12 -0.87 4.99 -26.73 -0.13 -1.00 16 5 C -0.16 -1.27 9.72 37.16 0.36 -0.91 16 6 C 0.02 0.26 5.32 -82.17 -0.44 -0.18 16 7 C -0.16 -1.96 9.60 -38.93 -0.37 -2.34 16 8 C -0.07 -0.98 7.29 -36.33 -0.26 -1.24 16 9 C 0.58 10.21 7.64 -12.51 -0.10 10.11 16 10 O -0.50 -10.43 14.33 5.28 0.08 -10.35 16 11 N -0.63 -10.99 5.29 -10.72 -0.06 -11.05 16 12 C -0.01 -0.16 6.30 -83.62 -0.53 -0.69 16 13 C -0.11 -2.51 9.90 -39.78 -0.39 -2.90 16 14 C -0.14 -3.57 8.61 -39.26 -0.34 -3.90 16 15 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 16 C -0.46 -11.91 9.02 -37.86 -0.34 -12.25 16 17 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 18 C 0.07 1.71 5.42 -17.33 -0.09 1.61 16 19 N -0.81 -20.57 10.59 55.55 0.59 -19.98 16 20 Si 0.92 18.61 29.56 -169.99 -5.03 13.59 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 23 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 24 C -0.21 -5.07 9.74 -39.26 -0.38 -5.45 16 25 C -0.08 -1.89 8.61 -39.78 -0.34 -2.23 16 26 O 0.11 1.53 11.05 15.52 0.17 1.70 16 27 N -0.35 -4.68 12.04 33.52 0.40 -4.27 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.31 6.46 -51.93 -0.34 -0.03 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.44 6.34 -51.93 -0.33 0.11 16 35 H 0.07 0.51 7.21 -51.93 -0.37 0.14 16 36 H 0.05 0.56 6.98 -51.93 -0.36 0.20 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.18 2.00 7.52 -52.49 -0.39 1.60 16 40 H 0.40 5.74 8.64 -40.82 -0.35 5.38 16 41 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.13 3.44 6.13 -52.49 -0.32 3.12 16 43 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 44 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 45 H 0.11 2.44 6.22 -52.49 -0.33 2.11 16 LS Contribution 374.08 15.07 5.64 5.64 Total: -1.00 -28.62 374.08 -8.31 -36.93 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.15 Total: 8.91 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -3.95 Total: -21.11 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.94 Total: -35.31 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.25 Total: -8.65 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.62 -8.31 -36.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131594787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.525 kcal (2) G-P(sol) polarization free energy of solvation -28.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds