Wall clock time and date at job start Tue Mar 31 2020 15:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47367 * 2 1 4 4 C 1.53005 * 109.46884 * 64.99704 * 3 2 1 5 5 C 1.52996 * 109.46837 * 185.00314 * 4 3 2 6 6 C 1.50695 * 109.47272 * 184.99868 * 3 2 1 7 7 C 1.41239 * 126.70245 * 274.71130 * 6 3 2 8 8 C 1.36879 * 103.84371 * 179.85995 * 7 6 3 9 9 C 1.47434 * 126.94648 * 180.11041 * 8 7 6 10 10 O 1.21595 * 120.00105 * 0.32129 * 9 8 7 11 11 N 1.34779 * 119.99715 * 180.32408 * 9 8 7 12 12 C 1.39068 * 120.00019 * 175.71465 * 11 9 8 13 13 C 1.39525 * 119.83462 * 215.03291 * 12 11 9 14 14 C 1.36357 * 120.16370 * 179.75604 * 13 12 11 15 15 C 1.40892 * 119.82773 * 0.54070 * 14 13 12 16 16 C 1.41116 * 120.15681 * 179.69283 * 15 14 13 17 17 H 1.07998 * 120.00017 * 214.80427 * 16 15 14 18 18 C 1.39925 * 119.99995 * 34.80975 * 16 15 14 19 19 N 1.30859 * 120.00157 * 355.55572 * 18 16 15 20 20 Si 1.86803 * 119.99887 * 175.55681 * 18 16 15 21 21 H 1.48500 * 109.47115 * 89.99717 * 20 18 16 22 22 H 1.48499 * 109.47011 * 209.99860 * 20 18 16 23 23 H 1.48503 * 109.47269 * 329.99732 * 20 18 16 24 24 C 1.40882 * 119.67979 * 359.71657 * 15 14 13 25 25 C 1.36351 * 119.83332 * 359.97438 * 24 15 14 26 26 O 1.34655 * 106.10372 * 0.39713 * 8 7 6 27 27 N 1.20887 * 111.46095 * 359.72787 * 26 8 7 28 28 H 1.09002 * 109.47652 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47602 * 300.00292 * 1 2 3 30 30 H 1.08999 * 109.47216 * 59.99954 * 1 2 3 31 31 H 1.09001 * 109.47347 * 240.00195 * 2 1 3 32 32 H 1.08999 * 109.47216 * 120.00046 * 2 1 3 33 33 H 1.08997 * 109.46765 * 305.00291 * 3 2 1 34 34 H 1.09003 * 109.47054 * 305.00118 * 4 3 2 35 35 H 1.09005 * 109.46885 * 65.00371 * 4 3 2 36 36 H 1.09003 * 109.47139 * 299.99752 * 5 4 3 37 37 H 1.08994 * 109.47647 * 59.99947 * 5 4 3 38 38 H 1.09007 * 109.47349 * 180.02562 * 5 4 3 39 39 H 1.08002 * 128.07340 * 0.02562 * 7 6 3 40 40 H 0.96997 * 119.99904 * 355.70863 * 11 9 8 41 41 H 1.07995 * 119.92046 * 0.02562 * 13 12 11 42 42 H 1.07998 * 120.08799 * 180.25986 * 14 13 12 43 43 H 0.96997 * 119.99941 * 180.02562 * 19 18 16 44 44 H 1.08001 * 120.08226 * 179.97438 * 24 15 14 45 45 H 1.07999 * 119.91782 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 1.3074 5 6 2.0353 3.6024 1.2559 6 6 3.5419 1.4443 -0.1238 7 6 4.4757 1.3195 0.9284 8 6 5.6892 1.3768 0.2978 9 6 7.0198 1.2923 0.9271 10 8 7.1151 1.1511 2.1311 11 7 8.1306 1.3717 0.1679 12 6 9.3846 1.3818 0.7692 13 6 10.4140 2.1434 0.2151 14 6 11.6447 2.1621 0.8019 15 6 11.8785 1.4006 1.9640 16 6 13.1514 1.4097 2.5733 17 1 13.5307 0.5153 3.0448 18 6 13.9219 2.5777 2.5666 19 7 13.5012 3.6354 1.9211 20 14 15.5511 2.6271 3.4792 21 1 16.6422 2.1985 2.5676 22 1 15.8135 4.0111 3.9490 23 1 15.4927 1.7108 4.6464 24 6 10.8357 0.6298 2.5146 25 6 9.6085 0.6260 1.9204 26 8 5.4221 1.5324 -1.0128 27 7 4.2317 1.5667 -1.2205 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6053 1.9815 -0.8418 34 1 0.5562 2.0471 1.4401 35 1 2.1407 1.6419 2.1427 36 1 3.1143 3.6819 1.1232 37 1 1.5298 4.0870 0.4206 38 1 1.7473 4.0897 2.1874 39 1 4.2783 1.2031 1.9838 40 1 8.0554 1.4218 -0.7978 41 1 10.2344 2.7231 -0.6782 42 1 12.4394 2.7553 0.3744 43 1 14.0355 4.4450 1.9162 44 1 11.0079 0.0434 3.4050 45 1 8.8082 0.0353 2.3410 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131594787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:04 Heat of formation + Delta-G solvation = 14.428119 kcal Electronic energy + Delta-G solvation = -26645.434021 eV Core-core repulsion = 22822.799378 eV Total energy + Delta-G solvation = -3822.634643 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -46.11458 -41.32012 -39.12269 -38.59445 -36.33881 -34.85928 -34.28457 -33.13453 -32.60409 -31.51173 -30.75297 -28.01547 -27.28347 -25.11288 -24.42170 -23.56478 -23.30541 -22.53847 -21.85253 -20.70488 -19.49532 -19.22426 -18.83392 -18.16247 -17.32000 -17.02109 -16.34145 -16.23147 -15.68510 -15.58511 -15.42392 -15.16203 -14.96944 -14.84184 -14.46300 -14.33681 -14.03096 -13.62063 -13.53104 -13.28317 -12.94143 -12.91997 -12.86872 -12.79597 -12.54743 -12.45499 -12.36035 -12.09474 -11.88278 -11.62360 -11.44102 -11.42240 -11.34716 -11.10373 -11.03842 -10.83608 -10.74838 -9.49493 -8.79980 -8.52212 -6.34833 -0.37905 0.78601 0.99474 1.13127 1.40864 1.44657 1.49806 1.55256 1.91937 2.19670 2.24597 2.78760 2.89047 3.35577 3.65207 3.78246 3.84213 3.94947 4.01646 4.11889 4.32778 4.37198 4.39048 4.50015 4.52972 4.58285 4.72809 4.82809 4.85338 4.88583 4.96586 5.05716 5.09142 5.11570 5.20426 5.21297 5.27723 5.27821 5.37458 5.41609 5.47902 5.67707 5.83884 5.93031 6.09793 6.35397 6.43175 6.65707 6.89768 6.94994 6.97119 7.09005 8.40283 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.031566 B = 0.002072 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.821780 B =13512.156842 C =13560.030918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.008 4.008 4 C -0.116 4.116 5 C -0.157 4.157 6 C 0.033 3.967 7 C -0.142 4.142 8 C -0.083 4.083 9 C 0.592 3.408 10 O -0.537 6.537 11 N -0.624 5.624 12 C 0.010 3.990 13 C -0.111 4.111 14 C -0.160 4.160 15 C 0.071 3.929 16 C -0.493 4.493 17 H 0.075 0.925 18 C 0.027 3.973 19 N -0.838 5.838 20 Si 0.988 3.012 21 H -0.260 1.260 22 H -0.270 1.270 23 H -0.262 1.262 24 C -0.219 4.219 25 C -0.091 4.091 26 O 0.108 5.892 27 N -0.361 5.361 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.032 0.968 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.194 0.806 40 H 0.421 0.579 41 H 0.125 0.875 42 H 0.120 0.880 43 H 0.286 0.714 44 H 0.101 0.899 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.287 -2.303 -4.580 22.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.028 4.028 4 C -0.154 4.154 5 C -0.214 4.214 6 C -0.125 4.125 7 C -0.164 4.164 8 C -0.149 4.149 9 C 0.377 3.623 10 O -0.415 6.415 11 N -0.267 5.267 12 C -0.084 4.084 13 C -0.131 4.131 14 C -0.180 4.180 15 C 0.069 3.931 16 C -0.524 4.524 17 H 0.093 0.907 18 C -0.185 4.185 19 N -0.465 5.465 20 Si 0.809 3.191 21 H -0.185 1.185 22 H -0.195 1.195 23 H -0.186 1.186 24 C -0.239 4.239 25 C -0.111 4.111 26 O 0.038 5.962 27 N -0.064 5.064 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.211 0.789 40 H 0.258 0.742 41 H 0.143 0.857 42 H 0.138 0.862 43 H 0.096 0.904 44 H 0.119 0.881 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -22.480 -1.992 -5.095 23.136 hybrid contribution 1.067 0.151 0.680 1.274 sum -21.413 -1.841 -4.415 21.941 Atomic orbital electron populations 1.21807 0.93431 1.02587 1.02823 1.21544 0.97613 0.93765 1.02354 1.19877 0.83309 0.98633 1.00934 1.21684 1.03265 0.95034 0.95375 1.21827 1.00370 0.96689 1.02518 1.23993 1.00007 1.01155 0.87388 1.23035 0.88874 1.01648 1.02864 1.23935 0.96442 1.09651 0.84835 1.16773 0.81718 0.77996 0.85782 1.90847 1.85560 1.50603 1.14458 1.42701 1.03368 1.69995 1.10655 1.17234 0.85009 1.05908 1.00203 1.20558 0.93138 0.98561 1.00875 1.21185 0.96920 1.03631 0.96307 1.18080 0.93300 0.91077 0.90684 1.19754 1.01137 0.98266 1.33207 0.90662 1.26762 1.02415 0.94353 0.94975 1.69813 1.38483 1.03234 1.35003 0.85099 0.76585 0.78477 0.78900 1.18455 1.19482 1.18570 1.20934 0.93327 1.07762 1.01908 1.20530 0.96399 0.98230 0.95909 1.84974 1.19740 1.67123 1.24407 1.73707 0.89270 1.18450 1.24969 0.91937 0.91015 0.92304 0.92791 0.91168 0.88910 0.88243 0.90991 0.94903 0.92289 0.91462 0.78868 0.74155 0.85715 0.86182 0.90379 0.88127 0.86902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.67 71.98 0.70 -0.59 16 2 C -0.11 -1.44 5.38 30.59 0.16 -1.28 16 3 C -0.01 -0.12 2.33 -11.54 -0.03 -0.15 16 4 C -0.12 -1.35 4.99 30.59 0.15 -1.20 16 5 C -0.16 -2.23 9.72 71.98 0.70 -1.53 16 6 C 0.03 0.70 5.32 43.54 0.23 0.93 16 7 C -0.14 -3.31 9.60 22.69 0.22 -3.09 16 8 C -0.08 -2.28 7.29 24.38 0.18 -2.10 16 9 C 0.59 20.21 7.64 86.67 0.66 20.87 16 10 O -0.54 -21.97 14.33 -4.02 -0.06 -22.03 16 11 N -0.62 -21.19 5.29 -306.08 -1.62 -22.81 16 12 C 0.01 0.41 6.30 38.61 0.24 0.65 16 13 C -0.11 -4.92 9.90 22.14 0.22 -4.70 16 14 C -0.16 -8.24 8.61 22.48 0.19 -8.04 16 15 C 0.07 3.84 5.55 -21.28 -0.12 3.73 16 16 C -0.49 -26.59 9.02 23.39 0.21 -26.38 16 17 H 0.08 3.91 7.85 -2.91 -0.02 3.89 16 18 C 0.03 1.38 5.42 85.25 0.46 1.84 16 19 N -0.84 -43.61 10.59 21.82 0.23 -43.37 16 20 Si 0.99 38.53 29.56 68.60 2.03 40.56 16 21 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 22 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 23 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 24 C -0.22 -11.12 9.74 22.48 0.22 -10.90 16 25 C -0.09 -4.25 8.61 22.14 0.19 -4.06 16 26 O 0.11 2.82 11.05 65.70 0.73 3.54 16 27 N -0.36 -9.09 12.04 -48.82 -0.59 -9.68 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.07 0.47 6.46 -2.39 -0.02 0.45 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.10 0.76 6.34 -2.39 -0.02 0.74 16 35 H 0.07 0.84 7.21 -2.38 -0.02 0.82 16 36 H 0.03 0.61 6.98 -2.39 -0.02 0.59 16 37 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.19 3.91 7.52 -2.91 -0.02 3.89 16 40 H 0.42 11.32 8.64 -92.71 -0.80 10.52 16 41 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 42 H 0.12 6.43 6.13 -2.91 -0.02 6.41 16 43 H 0.29 13.50 8.30 -92.71 -0.77 12.73 16 44 H 0.10 4.87 8.06 -2.91 -0.02 4.84 16 45 H 0.11 5.13 6.22 -2.91 -0.02 5.12 16 Total: -1.00 -62.92 374.08 5.54 -57.38 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: 0.22 Total: 32.42 kcal Atomic # 6 Polarization: -40.61 SS G_CDS: 4.60 Total: -36.01 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -1.98 Total: -75.86 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: 0.67 Total: -18.49 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -62.92 5.54 -57.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131594787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.811 kcal (2) G-P(sol) polarization free energy of solvation -62.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds