Wall clock time and date at job start Tue Mar 31 2020 16:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46895 * 2 1 4 4 C 1.53002 * 109.46895 * 179.97438 * 3 2 1 5 5 C 1.50705 * 109.47018 * 180.02562 * 4 3 2 6 6 O 1.21281 * 120.00146 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99775 * 180.02562 * 5 4 3 8 8 C 1.47313 * 122.25561 * 0.06648 * 7 5 4 9 9 S 1.84071 * 102.62097 * 155.25990 * 8 7 5 10 10 C 1.84206 * 93.91121 * 33.34916 * 9 8 7 11 11 C 1.45503 * 122.42951 * 180.02562 * 7 5 4 12 12 H 1.09006 * 108.75291 * 301.88762 * 11 7 5 13 13 C 1.50702 * 108.75379 * 60.10304 * 11 7 5 14 14 O 1.21282 * 119.99537 * 22.58196 * 13 11 7 15 15 N 1.34772 * 120.00194 * 202.84954 * 13 11 7 16 16 C 1.46496 * 120.00140 * 185.11213 * 15 13 11 17 17 C 1.53001 * 109.47233 * 91.68076 * 16 15 13 18 18 C 1.46503 * 119.99932 * 5.11836 * 15 13 11 19 19 C 1.50699 * 109.47445 * 94.67167 * 18 15 13 20 20 H 1.08004 * 119.99803 * 359.97438 * 19 18 15 21 21 C 1.37869 * 120.00043 * 179.97438 * 19 18 15 22 22 N 1.31518 * 120.00163 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00086 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47272 * 90.00068 * 23 21 19 25 25 H 1.48505 * 109.47255 * 210.00091 * 23 21 19 26 26 H 1.48498 * 109.47221 * 329.99589 * 23 21 19 27 27 H 1.09003 * 109.47083 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46806 * 299.99052 * 1 2 3 29 29 H 1.08992 * 109.47779 * 59.99659 * 1 2 3 30 30 H 1.09000 * 109.46448 * 240.00545 * 2 1 3 31 31 H 1.08995 * 109.47342 * 120.00600 * 2 1 3 32 32 H 1.09000 * 109.47127 * 60.00961 * 3 2 1 33 33 H 1.08995 * 109.47615 * 300.00433 * 3 2 1 34 34 H 1.09001 * 109.46806 * 60.00948 * 4 3 2 35 35 H 1.08995 * 109.47342 * 300.00600 * 4 3 2 36 36 H 1.09010 * 110.86105 * 36.94544 * 8 7 5 37 37 H 1.08995 * 110.87329 * 273.58546 * 8 7 5 38 38 H 1.08999 * 111.05512 * 209.72911 * 10 9 8 39 39 H 1.09002 * 111.08535 * 85.76648 * 10 9 8 40 40 H 1.09003 * 109.47663 * 211.68009 * 16 15 13 41 41 H 1.09005 * 109.47412 * 331.67783 * 16 15 13 42 42 H 1.08993 * 109.47302 * 59.99906 * 17 16 15 43 43 H 1.09004 * 109.47082 * 180.02562 * 17 16 15 44 44 H 1.09003 * 109.46650 * 299.99715 * 17 16 15 45 45 H 1.08996 * 109.47016 * 214.66947 * 18 15 13 46 46 H 1.08997 * 109.47063 * 334.66990 * 18 15 13 47 47 H 0.96998 * 119.99976 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8633 0.0013 6 8 3.2842 3.7852 0.0017 7 7 5.3973 3.1096 0.0014 8 6 6.3979 2.0284 -0.0005 9 16 7.8683 2.8425 -0.7513 10 6 7.4852 4.4904 -0.0227 11 6 5.9401 4.4596 0.0025 12 1 5.5648 4.9889 -0.8734 13 6 5.4610 5.1733 1.2403 14 8 5.1059 4.5356 2.2089 15 7 5.4220 6.5202 1.2690 16 6 5.0638 7.2164 2.5072 17 6 6.3332 7.5281 3.3026 18 6 5.7376 7.2881 0.0620 19 6 4.4629 7.6184 -0.6710 20 1 3.5127 7.2889 -0.2772 21 6 4.5098 8.3412 -1.8441 22 7 3.3974 8.6291 -2.4840 23 14 6.1533 8.9104 -2.5254 24 1 6.6988 7.8710 -3.4350 25 1 5.9654 10.1771 -3.2775 26 1 7.1021 9.1358 -1.4056 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8898 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9562 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.9336 0.9286 -0.8892 35 1 3.9330 0.9287 0.8908 36 1 6.0640 1.1915 -0.6141 37 1 6.6152 1.6985 1.0153 38 1 7.8506 5.2951 -0.6606 39 1 7.8912 4.5776 0.9851 40 1 4.5491 8.1463 2.2655 41 1 4.4077 6.5825 3.1038 42 1 6.9892 8.1619 2.7061 43 1 6.0666 8.0457 4.2241 44 1 6.8478 6.5981 3.5445 45 1 6.2458 8.2110 0.3410 46 1 6.3861 6.6975 -0.5851 47 1 3.4304 9.1379 -3.3091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133568638.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:13 Heat of formation + Delta-G solvation = -68.445100 kcal Electronic energy + Delta-G solvation = -27559.522886 eV Core-core repulsion = 23868.738542 eV Total energy + Delta-G solvation = -3690.784344 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.40389 -38.75480 -36.16533 -35.28563 -35.22600 -32.72179 -32.06912 -30.56860 -29.81015 -27.69916 -27.27343 -25.18290 -23.94707 -22.74266 -22.07985 -21.05967 -19.65846 -18.23281 -17.34038 -17.08379 -16.96169 -16.60237 -15.93610 -15.47702 -15.21994 -14.66176 -14.58866 -14.31901 -13.84705 -13.79215 -13.57034 -13.31894 -13.17268 -13.02726 -12.73199 -12.56466 -12.38053 -12.26861 -12.15873 -11.80848 -11.70381 -11.61149 -11.33107 -11.20781 -11.04374 -11.01932 -10.79865 -10.71834 -10.59546 -10.49295 -10.28509 -9.62876 -9.56904 -9.31936 -8.71617 -8.50120 -7.97771 -7.80095 -6.17649 -4.19667 1.51998 1.85930 2.68933 2.94863 3.15901 3.17735 3.21915 3.25599 3.79146 4.26573 4.32800 4.65185 4.79505 4.81759 4.84180 4.93451 5.08317 5.10897 5.12882 5.21672 5.28661 5.36938 5.41169 5.56251 5.59795 5.69999 5.76302 5.77326 5.78365 5.85592 5.89019 6.09341 6.19254 6.19959 6.24093 6.34175 6.40495 6.41676 6.51542 6.62710 7.27889 7.34543 7.43679 8.06300 8.37328 8.43023 8.78121 8.95276 9.39863 10.95278 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009807 B = 0.004564 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.410981 B = 6133.763282 C = 6708.879480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.107 4.107 4 C -0.132 4.132 5 C 0.524 3.476 6 O -0.499 6.499 7 N -0.601 5.601 8 C 0.158 3.842 9 S -0.269 6.269 10 C -0.057 4.057 11 C 0.113 3.887 12 H 0.126 0.874 13 C 0.522 3.478 14 O -0.556 6.556 15 N -0.583 5.583 16 C 0.115 3.885 17 C -0.163 4.163 18 C 0.207 3.793 19 C -0.539 4.539 20 H 0.082 0.918 21 C 0.077 3.923 22 N -0.887 5.887 23 Si 0.865 3.135 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.264 1.264 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.129 0.871 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.035 0.965 46 H 0.025 0.975 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.155 -14.346 5.183 16.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.145 4.145 4 C -0.172 4.172 5 C 0.311 3.689 6 O -0.371 6.371 7 N -0.339 5.339 8 C -0.076 4.076 9 S -0.042 6.042 10 C -0.206 4.206 11 C 0.004 3.996 12 H 0.144 0.856 13 C 0.307 3.693 14 O -0.435 6.435 15 N -0.314 5.314 16 C -0.008 4.008 17 C -0.221 4.221 18 C 0.086 3.914 19 C -0.578 4.578 20 H 0.100 0.900 21 C -0.126 4.126 22 N -0.525 5.525 23 Si 0.692 3.308 24 H -0.197 1.197 25 H -0.207 1.207 26 H -0.188 1.188 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.133 0.867 37 H 0.113 0.887 38 H 0.147 0.853 39 H 0.121 0.879 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.053 0.947 46 H 0.043 0.957 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.325 -14.465 4.775 16.494 hybrid contribution 0.069 0.907 0.085 0.913 sum 6.394 -13.558 4.860 15.759 Atomic orbital electron populations 1.21761 0.95746 1.01289 1.02229 1.21527 0.96138 0.96615 1.01730 1.21400 0.92495 0.96516 1.04093 1.21681 0.98321 0.93325 1.03905 1.20559 0.80278 0.92164 0.75894 1.90847 1.53646 1.46161 1.46438 1.48113 1.05909 1.04043 1.75819 1.24130 0.87529 0.92661 1.03267 1.88176 1.36378 1.10607 1.69077 1.24467 0.94274 0.96743 1.05092 1.21269 0.92957 0.84472 1.00893 0.85630 1.20267 0.78083 0.82739 0.88217 1.90585 1.49608 1.66227 1.37112 1.47828 1.66376 1.04879 1.12299 1.21268 0.96432 0.97810 0.85335 1.22125 0.98874 1.01269 0.99830 1.19876 0.97487 0.91587 0.82459 1.21382 0.93419 1.35450 1.07506 0.90006 1.24878 0.96168 0.95280 0.96320 1.69900 1.26645 1.38763 1.17143 0.87021 0.84733 0.79166 0.79919 1.19737 1.20728 1.18830 0.92956 0.92619 0.92547 0.92089 0.92119 0.91004 0.90907 0.89093 0.89000 0.86714 0.88662 0.85281 0.87890 0.89998 0.90712 0.92603 0.92095 0.93072 0.94680 0.95735 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.06 16 2 C -0.12 -1.16 5.93 -26.73 -0.16 -1.32 16 3 C -0.11 -1.35 4.50 -26.73 -0.12 -1.47 16 4 C -0.13 -1.60 4.48 -27.88 -0.12 -1.73 16 5 C 0.52 9.25 7.02 -10.98 -0.08 9.18 16 6 O -0.50 -11.51 15.26 5.56 0.08 -11.43 16 7 N -0.60 -9.81 2.66 -169.39 -0.45 -10.26 16 8 C 0.16 1.87 7.19 60.29 0.43 2.30 16 9 S -0.27 -3.47 23.43 -107.50 -2.52 -5.99 16 10 C -0.06 -0.82 6.56 37.98 0.25 -0.57 16 11 C 0.11 2.05 2.08 -68.80 -0.14 1.91 16 12 H 0.13 2.66 6.74 -51.93 -0.35 2.31 16 13 C 0.52 10.84 5.60 -10.99 -0.06 10.78 16 14 O -0.56 -12.54 15.52 5.55 0.09 -12.45 16 15 N -0.58 -12.15 2.46 -175.06 -0.43 -12.58 16 16 C 0.11 2.14 6.21 -4.04 -0.03 2.11 16 17 C -0.16 -2.42 10.24 37.16 0.38 -2.04 16 18 C 0.21 4.57 3.89 -5.19 -0.02 4.55 16 19 C -0.54 -14.69 9.89 -34.44 -0.34 -15.03 16 20 H 0.08 2.59 8.06 -52.48 -0.42 2.17 16 21 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 22 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 23 Si 0.87 19.72 27.47 -169.99 -4.67 15.05 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 26 H -0.26 -5.56 6.54 56.52 0.37 -5.19 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 33 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 34 H 0.09 0.86 7.62 -51.93 -0.40 0.47 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.11 1.01 7.11 -51.92 -0.37 0.65 16 37 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.13 1.73 7.22 -51.93 -0.38 1.36 16 39 H 0.10 1.38 7.85 -51.93 -0.41 0.98 16 40 H 0.08 1.54 8.09 -51.93 -0.42 1.12 16 41 H 0.07 1.46 7.31 -51.93 -0.38 1.08 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.04 0.75 7.16 -51.93 -0.37 0.38 16 46 H 0.02 0.51 4.34 -51.93 -0.23 0.29 16 47 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 387.89 15.07 5.85 5.85 Total: -1.00 -34.18 387.89 -8.97 -43.15 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -7.95 Total: 4.75 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 0.26 Total: 9.63 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: -0.11 Total: -48.56 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: 0.17 Total: -23.88 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.67 Total: 15.05 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -2.52 Total: -5.99 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.18 -8.97 -43.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133568638.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.292 kcal (2) G-P(sol) polarization free energy of solvation -34.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds