Wall clock time and date at job start Tue Mar 31 2020 16:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46895 * 2 1 4 4 C 1.53002 * 109.46895 * 179.97438 * 3 2 1 5 5 C 1.50705 * 109.47018 * 180.02562 * 4 3 2 6 6 O 1.21281 * 120.00146 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99775 * 180.02562 * 5 4 3 8 8 C 1.47313 * 122.25561 * 0.06648 * 7 5 4 9 9 S 1.84071 * 102.62097 * 155.25990 * 8 7 5 10 10 C 1.84206 * 93.91121 * 33.34916 * 9 8 7 11 11 C 1.45503 * 122.42951 * 180.02562 * 7 5 4 12 12 H 1.09006 * 108.75291 * 301.88762 * 11 7 5 13 13 C 1.50702 * 108.75379 * 60.10304 * 11 7 5 14 14 O 1.21282 * 119.99537 * 22.58196 * 13 11 7 15 15 N 1.34772 * 120.00194 * 202.84954 * 13 11 7 16 16 C 1.46496 * 120.00140 * 185.11213 * 15 13 11 17 17 C 1.53001 * 109.47233 * 91.68076 * 16 15 13 18 18 C 1.46503 * 119.99932 * 5.11836 * 15 13 11 19 19 C 1.50699 * 109.47445 * 94.67167 * 18 15 13 20 20 H 1.08004 * 119.99803 * 359.97438 * 19 18 15 21 21 C 1.37869 * 120.00043 * 179.97438 * 19 18 15 22 22 N 1.31518 * 120.00163 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00086 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47272 * 90.00068 * 23 21 19 25 25 H 1.48505 * 109.47255 * 210.00091 * 23 21 19 26 26 H 1.48498 * 109.47221 * 329.99589 * 23 21 19 27 27 H 1.09003 * 109.47083 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46806 * 299.99052 * 1 2 3 29 29 H 1.08992 * 109.47779 * 59.99659 * 1 2 3 30 30 H 1.09000 * 109.46448 * 240.00545 * 2 1 3 31 31 H 1.08995 * 109.47342 * 120.00600 * 2 1 3 32 32 H 1.09000 * 109.47127 * 60.00961 * 3 2 1 33 33 H 1.08995 * 109.47615 * 300.00433 * 3 2 1 34 34 H 1.09001 * 109.46806 * 60.00948 * 4 3 2 35 35 H 1.08995 * 109.47342 * 300.00600 * 4 3 2 36 36 H 1.09010 * 110.86105 * 36.94544 * 8 7 5 37 37 H 1.08995 * 110.87329 * 273.58546 * 8 7 5 38 38 H 1.08999 * 111.05512 * 209.72911 * 10 9 8 39 39 H 1.09002 * 111.08535 * 85.76648 * 10 9 8 40 40 H 1.09003 * 109.47663 * 211.68009 * 16 15 13 41 41 H 1.09005 * 109.47412 * 331.67783 * 16 15 13 42 42 H 1.08993 * 109.47302 * 59.99906 * 17 16 15 43 43 H 1.09004 * 109.47082 * 180.02562 * 17 16 15 44 44 H 1.09003 * 109.46650 * 299.99715 * 17 16 15 45 45 H 1.08996 * 109.47016 * 214.66947 * 18 15 13 46 46 H 1.08997 * 109.47063 * 334.66990 * 18 15 13 47 47 H 0.96998 * 119.99976 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8633 0.0013 6 8 3.2842 3.7852 0.0017 7 7 5.3973 3.1096 0.0014 8 6 6.3979 2.0284 -0.0005 9 16 7.8683 2.8425 -0.7513 10 6 7.4852 4.4904 -0.0227 11 6 5.9401 4.4596 0.0025 12 1 5.5648 4.9889 -0.8734 13 6 5.4610 5.1733 1.2403 14 8 5.1059 4.5356 2.2089 15 7 5.4220 6.5202 1.2690 16 6 5.0638 7.2164 2.5072 17 6 6.3332 7.5281 3.3026 18 6 5.7376 7.2881 0.0620 19 6 4.4629 7.6184 -0.6710 20 1 3.5127 7.2889 -0.2772 21 6 4.5098 8.3412 -1.8441 22 7 3.3974 8.6291 -2.4840 23 14 6.1533 8.9104 -2.5254 24 1 6.6988 7.8710 -3.4350 25 1 5.9654 10.1771 -3.2775 26 1 7.1021 9.1358 -1.4056 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8898 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9562 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.9336 0.9286 -0.8892 35 1 3.9330 0.9287 0.8908 36 1 6.0640 1.1915 -0.6141 37 1 6.6152 1.6985 1.0153 38 1 7.8506 5.2951 -0.6606 39 1 7.8912 4.5776 0.9851 40 1 4.5491 8.1463 2.2655 41 1 4.4077 6.5825 3.1038 42 1 6.9892 8.1619 2.7061 43 1 6.0666 8.0457 4.2241 44 1 6.8478 6.5981 3.5445 45 1 6.2458 8.2110 0.3410 46 1 6.3861 6.6975 -0.5851 47 1 3.4304 9.1379 -3.3091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133568638.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:12 Heat of formation + Delta-G solvation = -91.034918 kcal Electronic energy + Delta-G solvation = -27560.502454 eV Core-core repulsion = 23868.738542 eV Total energy + Delta-G solvation = -3691.763912 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.85505 -40.27376 -37.50932 -36.97897 -36.26575 -34.72940 -33.42702 -31.89951 -30.93705 -29.55761 -28.39403 -26.28218 -25.21419 -24.63656 -23.39143 -22.03070 -20.97429 -19.72323 -19.12119 -18.76075 -18.43568 -17.85101 -17.15300 -16.93219 -16.41454 -16.28759 -16.07959 -15.70854 -15.10663 -14.79238 -14.73746 -14.70317 -14.55431 -14.40417 -14.29545 -13.88111 -13.73847 -13.50196 -13.34327 -13.24511 -13.11025 -13.01858 -12.66575 -12.47321 -12.25283 -12.15100 -12.10113 -12.00155 -11.89783 -11.87914 -11.72324 -11.48009 -11.07868 -10.83981 -10.74433 -9.91803 -9.52607 -8.96293 -8.32100 -6.41854 0.50061 0.79293 1.34481 1.36633 1.39618 1.49369 1.62468 1.67095 2.26715 2.32063 3.00566 3.11492 3.39031 3.52097 3.84734 3.85220 3.94907 4.06893 4.13613 4.24325 4.26165 4.30917 4.32501 4.41197 4.46395 4.47430 4.55292 4.60180 4.70302 4.72818 4.88426 4.88721 4.96013 4.98493 5.02317 5.08611 5.25580 5.26552 5.36079 5.39628 5.47935 5.63149 6.07672 6.12971 6.52293 6.65323 7.04455 7.13793 7.25667 8.85754 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009807 B = 0.004564 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.410981 B = 6133.763282 C = 6708.879480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 C -0.106 4.106 4 C -0.121 4.121 5 C 0.511 3.489 6 O -0.573 6.573 7 N -0.604 5.604 8 C 0.154 3.846 9 S -0.252 6.252 10 C -0.056 4.056 11 C 0.114 3.886 12 H 0.088 0.912 13 C 0.516 3.484 14 O -0.580 6.580 15 N -0.592 5.592 16 C 0.107 3.893 17 C -0.147 4.147 18 C 0.218 3.782 19 C -0.545 4.545 20 H 0.012 0.988 21 C 0.013 3.987 22 N -0.947 5.947 23 Si 0.945 3.055 24 H -0.258 1.258 25 H -0.283 1.283 26 H -0.225 1.225 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.040 0.960 33 H 0.045 0.955 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.153 0.847 37 H 0.116 0.884 38 H 0.140 0.860 39 H 0.115 0.885 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.048 0.952 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.200 -16.426 5.198 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.150 4.150 3 C -0.145 4.145 4 C -0.160 4.160 5 C 0.301 3.699 6 O -0.450 6.450 7 N -0.340 5.340 8 C -0.078 4.078 9 S -0.025 6.025 10 C -0.205 4.205 11 C 0.004 3.996 12 H 0.106 0.894 13 C 0.302 3.698 14 O -0.461 6.461 15 N -0.322 5.322 16 C -0.015 4.015 17 C -0.205 4.205 18 C 0.097 3.903 19 C -0.584 4.584 20 H 0.031 0.969 21 C -0.185 4.185 22 N -0.586 5.586 23 Si 0.765 3.235 24 H -0.182 1.182 25 H -0.209 1.209 26 H -0.148 1.148 27 H 0.091 0.909 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.147 0.853 35 H 0.141 0.859 36 H 0.170 0.830 37 H 0.134 0.866 38 H 0.159 0.841 39 H 0.134 0.866 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.066 0.934 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.420 -16.589 4.822 20.175 hybrid contribution -1.366 1.503 0.117 2.034 sum 9.054 -15.086 4.940 18.275 Atomic orbital electron populations 1.21800 0.96052 1.02274 1.01282 1.21487 0.95878 0.94134 1.03543 1.21367 0.93405 0.98379 1.01310 1.21781 0.97411 0.89827 1.07010 1.21719 0.80232 0.93779 0.74167 1.90823 1.55611 1.48708 1.49858 1.48287 1.06515 1.04541 1.74661 1.24564 0.85877 0.92041 1.05366 1.88139 1.36315 1.08962 1.69072 1.24445 0.90971 0.98660 1.06447 1.21171 0.95613 0.85270 0.97506 0.89443 1.20799 0.77428 0.82661 0.88873 1.90549 1.50632 1.66572 1.38321 1.47952 1.66412 1.05304 1.12541 1.21408 0.98474 0.96615 0.85030 1.21993 0.96524 1.01693 1.00256 1.19707 0.95031 0.92840 0.82756 1.21501 0.93067 1.35420 1.08389 0.96922 1.25972 1.01211 0.95025 0.96322 1.70105 1.30217 1.40279 1.18012 0.85770 0.79034 0.78501 0.80155 1.18249 1.20898 1.14788 0.90901 0.93685 0.93545 0.90034 0.90314 0.94143 0.93641 0.85268 0.85942 0.82963 0.86630 0.84149 0.86630 0.91178 0.92632 0.91465 0.89594 0.93074 0.92638 0.93390 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.91 71.98 0.71 -2.13 16 2 C -0.11 -1.94 5.93 30.59 0.18 -1.76 16 3 C -0.11 -2.75 4.50 30.59 0.14 -2.61 16 4 C -0.12 -2.73 4.48 29.85 0.13 -2.60 16 5 C 0.51 18.43 7.02 87.66 0.62 19.05 16 6 O -0.57 -28.62 15.26 -3.03 -0.05 -28.67 16 7 N -0.60 -19.26 2.66 -808.23 -2.15 -21.41 16 8 C 0.15 3.09 7.19 127.61 0.92 4.01 16 9 S -0.25 -5.66 23.43 -56.49 -1.32 -6.98 16 10 C -0.06 -1.49 6.56 72.51 0.48 -1.02 16 11 C 0.11 4.15 2.08 44.96 0.09 4.24 16 12 H 0.09 3.85 6.74 -2.38 -0.02 3.83 16 13 C 0.52 21.99 5.60 87.66 0.49 22.48 16 14 O -0.58 -26.88 15.52 -3.04 -0.05 -26.93 16 15 N -0.59 -25.33 2.46 -826.16 -2.03 -27.36 16 16 C 0.11 4.13 6.21 86.38 0.54 4.66 16 17 C -0.15 -4.13 10.24 71.98 0.74 -3.39 16 18 C 0.22 9.65 3.89 85.63 0.33 9.98 16 19 C -0.55 -31.37 9.89 25.60 0.25 -31.11 16 20 H 0.01 0.87 8.06 -2.91 -0.02 0.84 16 21 C 0.01 0.74 5.47 84.65 0.46 1.20 16 22 N -0.95 -59.60 13.96 21.44 0.30 -59.30 16 23 Si 0.94 40.20 27.47 68.60 1.88 42.08 16 24 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 25 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 26 H -0.23 -8.18 6.54 99.48 0.65 -7.53 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.04 1.27 8.10 -2.39 -0.02 1.25 16 33 H 0.04 1.39 8.10 -2.39 -0.02 1.37 16 34 H 0.13 1.95 7.62 -2.39 -0.02 1.94 16 35 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.15 1.92 7.11 -2.38 -0.02 1.91 16 37 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.14 3.36 7.22 -2.39 -0.02 3.34 16 39 H 0.12 2.79 7.85 -2.39 -0.02 2.77 16 40 H 0.07 2.79 8.09 -2.39 -0.02 2.77 16 41 H 0.06 2.30 7.31 -2.38 -0.02 2.29 16 42 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.09 1.98 8.14 -2.38 -0.02 1.97 16 44 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.06 2.25 7.16 -2.39 -0.02 2.23 16 46 H 0.05 1.92 4.34 -2.39 -0.01 1.91 16 47 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -84.37 387.89 3.56 -80.81 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 0.89 Total: 26.76 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: 6.08 Total: 21.00 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -3.88 Total: -108.07 kcal Atomic # 8 Polarization: -55.50 SS G_CDS: -0.09 Total: -55.59 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 1.88 Total: 42.08 kcal Atomic # 16 Polarization: -5.66 SS G_CDS: -1.32 Total: -6.98 kcal Total: -84.37 3.56 -80.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133568638.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.225 kcal (2) G-P(sol) polarization free energy of solvation -84.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds