Wall clock time and date at job start Tue Mar 31 2020 16:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 C 1.52997 * 109.47094 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47397 * 180.02562 * 4 3 2 6 6 O 1.21284 * 119.99673 * 359.97438 * 5 4 3 7 7 N 1.34780 * 120.00133 * 180.02562 * 5 4 3 8 8 C 1.47050 * 122.49840 * 353.95151 * 7 5 4 9 9 S 1.83564 * 105.07159 * 175.88616 * 8 7 5 10 10 C 1.84465 * 94.78453 * 341.58466 * 9 8 7 11 11 C 1.46134 * 122.49837 * 173.92931 * 7 5 4 12 12 H 1.09004 * 109.46944 * 90.72911 * 11 7 5 13 13 C 1.50707 * 109.46820 * 330.74379 * 11 7 5 14 14 O 1.21285 * 120.00003 * 325.07089 * 13 11 7 15 15 N 1.34774 * 119.99890 * 145.07276 * 13 11 7 16 16 C 1.46495 * 120.00033 * 183.99016 * 15 13 11 17 17 C 1.53000 * 109.47301 * 85.70475 * 16 15 13 18 18 C 1.46504 * 120.00215 * 3.99174 * 15 13 11 19 19 C 1.50698 * 109.47181 * 84.38874 * 18 15 13 20 20 H 1.08008 * 119.99721 * 0.02562 * 19 18 15 21 21 C 1.37880 * 120.00278 * 180.02562 * 19 18 15 22 22 N 1.31511 * 119.99449 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00245 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47004 * 90.00080 * 23 21 19 25 25 H 1.48497 * 109.47401 * 209.99870 * 23 21 19 26 26 H 1.48500 * 109.47380 * 330.00262 * 23 21 19 27 27 H 1.08998 * 109.47446 * 59.99668 * 1 2 3 28 28 H 1.08997 * 109.46771 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46483 * 299.99296 * 1 2 3 30 30 H 1.09004 * 109.46871 * 240.00447 * 2 1 3 31 31 H 1.08998 * 109.47446 * 120.00332 * 2 1 3 32 32 H 1.09004 * 109.46991 * 60.00521 * 3 2 1 33 33 H 1.08999 * 109.47862 * 300.00353 * 3 2 1 34 34 H 1.09000 * 109.47134 * 60.00748 * 4 3 2 35 35 H 1.09004 * 109.47713 * 300.00617 * 4 3 2 36 36 H 1.09004 * 110.34379 * 294.81615 * 8 7 5 37 37 H 1.09006 * 110.34395 * 56.95837 * 8 7 5 38 38 H 1.09000 * 111.27495 * 275.42561 * 10 9 8 39 39 H 1.09006 * 111.42325 * 150.73979 * 10 9 8 40 40 H 1.09001 * 109.47363 * 205.70905 * 16 15 13 41 41 H 1.08997 * 109.47123 * 325.70398 * 16 15 13 42 42 H 1.08997 * 109.46965 * 304.48577 * 17 16 15 43 43 H 1.09002 * 109.46817 * 64.48559 * 17 16 15 44 44 H 1.08998 * 109.47165 * 184.48199 * 17 16 15 45 45 H 1.08993 * 109.47483 * 204.39373 * 18 15 13 46 46 H 1.09005 * 109.46639 * 324.39601 * 18 15 13 47 47 H 0.97004 * 119.99903 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8634 0.0000 6 8 3.2841 3.7852 0.0004 7 7 5.3974 3.1097 -0.0009 8 6 6.3997 2.0414 0.1281 9 16 8.0206 2.8828 -0.0568 10 6 7.3203 4.3929 -0.8517 11 6 5.9453 4.4582 -0.1307 12 1 6.0746 4.8947 0.8597 13 6 4.9974 5.3102 -0.9351 14 8 4.3642 4.8189 -1.8455 15 7 4.8534 6.6179 -0.6427 16 6 3.8688 7.4261 -1.3662 17 6 2.5026 7.2910 -0.6907 18 6 5.6815 7.2313 0.3986 19 6 7.0057 7.6438 -0.1908 20 1 7.2099 7.4671 -1.2365 21 6 7.9567 8.2467 0.6050 22 7 7.7082 8.4614 1.8785 23 14 9.5978 8.7586 -0.1257 24 1 9.5004 10.1502 -0.6348 25 1 10.6494 8.6868 0.9203 26 1 9.9483 7.8460 -1.2435 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8901 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9564 -0.8899 34 1 3.9329 0.9290 -0.8909 35 1 3.9338 0.9285 0.8890 36 1 6.3271 1.5700 1.1083 37 1 6.2661 1.2993 -0.6591 38 1 7.1988 4.2541 -1.9260 39 1 7.9245 5.2738 -0.6344 40 1 4.1778 8.4713 -1.3551 41 1 3.8003 7.0785 -2.3970 42 1 2.2297 6.2375 -0.6305 43 1 2.5508 7.7118 0.3137 44 1 1.7543 7.8276 -1.2739 45 1 5.1725 8.1085 0.7979 46 1 5.8489 6.5120 1.2003 47 1 8.3770 8.8859 2.4383 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133568870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:16 Heat of formation + Delta-G solvation = -73.669904 kcal Electronic energy + Delta-G solvation = -27679.392086 eV Core-core repulsion = 23988.381177 eV Total energy + Delta-G solvation = -3691.010908 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.38383 -38.49210 -36.10835 -35.29935 -35.04392 -32.86875 -31.75799 -30.45463 -29.59078 -27.26341 -26.94926 -25.13148 -23.84638 -23.05724 -22.06180 -21.09756 -19.70833 -18.13060 -17.17578 -16.96057 -16.53222 -16.40618 -15.93259 -15.30095 -14.98416 -14.82096 -14.52368 -14.11477 -13.89765 -13.76469 -13.61917 -13.22206 -12.96128 -12.77536 -12.59613 -12.40357 -12.21892 -12.03294 -11.99978 -11.79190 -11.49113 -11.44462 -11.27571 -11.24295 -11.08638 -10.98763 -10.78910 -10.66635 -10.50160 -10.40786 -10.09213 -9.80079 -9.49571 -9.11620 -8.70843 -8.43375 -7.72737 -7.65828 -6.24168 -4.33168 1.71636 2.14090 2.72768 2.92068 3.18376 3.26778 3.27510 3.49549 3.94156 4.27244 4.47212 4.75539 4.82323 4.84986 5.00277 5.07373 5.08085 5.13138 5.19384 5.28994 5.37270 5.39439 5.54853 5.70038 5.71451 5.75498 5.79438 5.91117 5.95441 5.98697 6.01046 6.01484 6.16878 6.29949 6.32296 6.37460 6.53303 6.77240 6.83391 7.15906 7.37047 7.54213 7.71646 7.99490 8.33692 8.35719 8.73652 9.04889 9.35318 10.81909 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014321 B = 0.004227 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.766773 B = 6621.853267 C = 7990.540085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.104 4.104 4 C -0.133 4.133 5 C 0.526 3.474 6 O -0.503 6.503 7 N -0.613 5.613 8 C 0.155 3.845 9 S -0.271 6.271 10 C -0.050 4.050 11 C 0.118 3.882 12 H 0.115 0.885 13 C 0.538 3.462 14 O -0.556 6.556 15 N -0.590 5.590 16 C 0.122 3.878 17 C -0.163 4.163 18 C 0.236 3.764 19 C -0.544 4.544 20 H 0.062 0.938 21 C 0.069 3.931 22 N -0.885 5.885 23 Si 0.892 3.108 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.272 1.272 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.149 0.851 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.038 0.962 46 H 0.034 0.966 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.269 -14.069 -1.888 15.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.142 4.142 4 C -0.173 4.173 5 C 0.314 3.686 6 O -0.376 6.376 7 N -0.351 5.351 8 C -0.079 4.079 9 S -0.045 6.045 10 C -0.199 4.199 11 C 0.011 3.989 12 H 0.132 0.868 13 C 0.323 3.677 14 O -0.435 6.435 15 N -0.321 5.321 16 C -0.001 4.001 17 C -0.221 4.221 18 C 0.116 3.884 19 C -0.582 4.582 20 H 0.080 0.920 21 C -0.135 4.135 22 N -0.522 5.522 23 Si 0.719 3.281 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.196 1.196 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.167 0.833 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.056 0.944 46 H 0.052 0.948 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.841 -14.065 -1.865 15.344 hybrid contribution 0.151 0.738 -0.475 0.891 sum -5.690 -13.327 -2.340 14.678 Atomic orbital electron populations 1.21757 0.95787 1.01327 1.02091 1.21540 0.96076 0.96706 1.01809 1.21372 0.92638 0.96412 1.03816 1.21670 0.98140 0.93569 1.03915 1.20465 0.80469 0.91980 0.75727 1.90734 1.53853 1.46063 1.46935 1.48268 1.05762 1.05777 1.75256 1.23813 0.87167 0.92052 1.04890 1.88147 1.12472 1.22921 1.80919 1.24850 0.95588 0.97903 1.01591 1.21829 0.92310 0.82926 1.01869 0.86762 1.19562 0.81767 0.82639 0.83760 1.90584 1.48043 1.72861 1.32026 1.48043 1.37328 1.08000 1.38680 1.21181 0.87833 0.95271 0.95815 1.22101 0.96880 1.02683 1.00483 1.19471 0.89395 0.94055 0.85520 1.21498 0.99368 1.40877 0.96470 0.91951 1.24937 0.98690 0.95197 0.94709 1.69918 1.35302 1.41904 1.05109 0.86585 0.83175 0.79328 0.78995 1.20432 1.20923 1.19637 0.92639 0.92926 0.92669 0.92070 0.92093 0.91228 0.91002 0.89055 0.89257 0.88189 0.88890 0.88475 0.83286 0.90673 0.91506 0.91738 0.93010 0.92864 0.94352 0.94805 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.12 -1.07 5.93 -26.73 -0.16 -1.23 16 3 C -0.10 -1.20 4.50 -26.73 -0.12 -1.32 16 4 C -0.13 -1.51 4.64 -27.88 -0.13 -1.64 16 5 C 0.53 8.74 6.88 -10.98 -0.08 8.66 16 6 O -0.50 -10.36 13.13 -17.88 -0.23 -10.59 16 7 N -0.61 -9.96 3.13 -168.89 -0.53 -10.49 16 8 C 0.16 1.94 6.86 60.15 0.41 2.35 16 9 S -0.27 -4.09 23.34 -107.50 -2.51 -6.60 16 10 C -0.05 -0.89 6.96 38.43 0.27 -0.62 16 11 C 0.12 2.25 2.72 -68.00 -0.18 2.07 16 12 H 0.11 2.37 5.80 -51.93 -0.30 2.07 16 13 C 0.54 11.60 4.94 -10.98 -0.05 11.54 16 14 O -0.56 -12.99 14.23 -17.88 -0.25 -13.25 16 15 N -0.59 -12.81 2.48 -175.06 -0.43 -13.24 16 16 C 0.12 2.39 6.09 -4.04 -0.02 2.36 16 17 C -0.16 -2.92 10.21 37.16 0.38 -2.54 16 18 C 0.24 5.54 4.94 -5.19 -0.03 5.52 16 19 C -0.54 -13.41 7.88 -34.44 -0.27 -13.68 16 20 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 21 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 22 N -0.88 -23.67 13.29 55.43 0.74 -22.93 16 23 Si 0.89 19.80 29.54 -169.99 -5.02 14.78 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 33 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 34 H 0.09 0.91 8.06 -51.93 -0.42 0.49 16 35 H 0.09 0.80 8.11 -51.93 -0.42 0.38 16 36 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.09 0.96 7.98 -51.93 -0.41 0.54 16 38 H 0.10 1.68 8.10 -51.93 -0.42 1.26 16 39 H 0.15 2.86 6.73 -51.93 -0.35 2.51 16 40 H 0.07 1.40 8.04 -51.93 -0.42 0.99 16 41 H 0.07 1.32 7.50 -51.93 -0.39 0.93 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.04 0.96 8.03 -51.93 -0.42 0.54 16 46 H 0.03 0.84 5.91 -51.93 -0.31 0.53 16 47 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 388.22 15.07 5.85 5.85 Total: -1.00 -29.97 388.22 -10.16 -40.13 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -8.05 Total: 4.12 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 0.29 Total: 12.22 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -0.23 Total: -46.66 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.49 Total: -23.84 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: -4.09 SS G_CDS: -2.51 Total: -6.60 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.97 -10.16 -40.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133568870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.541 kcal (2) G-P(sol) polarization free energy of solvation -29.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds