Wall clock time and date at job start Tue Mar 31 2020 16:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 C 1.52997 * 109.47094 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47397 * 180.02562 * 4 3 2 6 6 O 1.21284 * 119.99673 * 359.97438 * 5 4 3 7 7 N 1.34780 * 120.00133 * 180.02562 * 5 4 3 8 8 C 1.47050 * 122.49840 * 353.95151 * 7 5 4 9 9 S 1.83564 * 105.07159 * 175.88616 * 8 7 5 10 10 C 1.84465 * 94.78453 * 341.58466 * 9 8 7 11 11 C 1.46134 * 122.49837 * 173.92931 * 7 5 4 12 12 H 1.09004 * 109.46944 * 90.72911 * 11 7 5 13 13 C 1.50707 * 109.46820 * 330.74379 * 11 7 5 14 14 O 1.21285 * 120.00003 * 325.07089 * 13 11 7 15 15 N 1.34774 * 119.99890 * 145.07276 * 13 11 7 16 16 C 1.46495 * 120.00033 * 183.99016 * 15 13 11 17 17 C 1.53000 * 109.47301 * 85.70475 * 16 15 13 18 18 C 1.46504 * 120.00215 * 3.99174 * 15 13 11 19 19 C 1.50698 * 109.47181 * 84.38874 * 18 15 13 20 20 H 1.08008 * 119.99721 * 0.02562 * 19 18 15 21 21 C 1.37880 * 120.00278 * 180.02562 * 19 18 15 22 22 N 1.31511 * 119.99449 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00245 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47004 * 90.00080 * 23 21 19 25 25 H 1.48497 * 109.47401 * 209.99870 * 23 21 19 26 26 H 1.48500 * 109.47380 * 330.00262 * 23 21 19 27 27 H 1.08998 * 109.47446 * 59.99668 * 1 2 3 28 28 H 1.08997 * 109.46771 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46483 * 299.99296 * 1 2 3 30 30 H 1.09004 * 109.46871 * 240.00447 * 2 1 3 31 31 H 1.08998 * 109.47446 * 120.00332 * 2 1 3 32 32 H 1.09004 * 109.46991 * 60.00521 * 3 2 1 33 33 H 1.08999 * 109.47862 * 300.00353 * 3 2 1 34 34 H 1.09000 * 109.47134 * 60.00748 * 4 3 2 35 35 H 1.09004 * 109.47713 * 300.00617 * 4 3 2 36 36 H 1.09004 * 110.34379 * 294.81615 * 8 7 5 37 37 H 1.09006 * 110.34395 * 56.95837 * 8 7 5 38 38 H 1.09000 * 111.27495 * 275.42561 * 10 9 8 39 39 H 1.09006 * 111.42325 * 150.73979 * 10 9 8 40 40 H 1.09001 * 109.47363 * 205.70905 * 16 15 13 41 41 H 1.08997 * 109.47123 * 325.70398 * 16 15 13 42 42 H 1.08997 * 109.46965 * 304.48577 * 17 16 15 43 43 H 1.09002 * 109.46817 * 64.48559 * 17 16 15 44 44 H 1.08998 * 109.47165 * 184.48199 * 17 16 15 45 45 H 1.08993 * 109.47483 * 204.39373 * 18 15 13 46 46 H 1.09005 * 109.46639 * 324.39601 * 18 15 13 47 47 H 0.97004 * 119.99903 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8634 0.0000 6 8 3.2841 3.7852 0.0004 7 7 5.3974 3.1097 -0.0009 8 6 6.3997 2.0414 0.1281 9 16 8.0206 2.8828 -0.0568 10 6 7.3203 4.3929 -0.8517 11 6 5.9453 4.4582 -0.1307 12 1 6.0746 4.8947 0.8597 13 6 4.9974 5.3102 -0.9351 14 8 4.3642 4.8189 -1.8455 15 7 4.8534 6.6179 -0.6427 16 6 3.8688 7.4261 -1.3662 17 6 2.5026 7.2910 -0.6907 18 6 5.6815 7.2313 0.3986 19 6 7.0057 7.6438 -0.1908 20 1 7.2099 7.4671 -1.2365 21 6 7.9567 8.2467 0.6050 22 7 7.7082 8.4614 1.8785 23 14 9.5978 8.7586 -0.1257 24 1 9.5004 10.1502 -0.6348 25 1 10.6494 8.6868 0.9203 26 1 9.9483 7.8460 -1.2435 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8901 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9564 -0.8899 34 1 3.9329 0.9290 -0.8909 35 1 3.9338 0.9285 0.8890 36 1 6.3271 1.5700 1.1083 37 1 6.2661 1.2993 -0.6591 38 1 7.1988 4.2541 -1.9260 39 1 7.9245 5.2738 -0.6344 40 1 4.1778 8.4713 -1.3551 41 1 3.8003 7.0785 -2.3970 42 1 2.2297 6.2375 -0.6305 43 1 2.5508 7.7118 0.3137 44 1 1.7543 7.8276 -1.2739 45 1 5.1725 8.1085 0.7979 46 1 5.8489 6.5120 1.2003 47 1 8.3770 8.8859 2.4383 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133568870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:15 Heat of formation + Delta-G solvation = -89.181530 kcal Electronic energy + Delta-G solvation = -27680.064720 eV Core-core repulsion = 23988.381177 eV Total energy + Delta-G solvation = -3691.683543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.83233 -40.01516 -37.41807 -36.86654 -36.18869 -34.76035 -33.16561 -31.76126 -30.80598 -28.98166 -28.30302 -26.24334 -25.18415 -24.98680 -23.38613 -22.00210 -21.01809 -19.64563 -18.76005 -18.45861 -18.29692 -17.72552 -17.06709 -16.84065 -16.45173 -16.14924 -15.96994 -15.68776 -15.18037 -14.77604 -14.58200 -14.53374 -14.44652 -14.34190 -13.99320 -13.72758 -13.67769 -13.49376 -13.27827 -13.17637 -13.14904 -12.94235 -12.71364 -12.57190 -12.20477 -12.16071 -12.07389 -11.88327 -11.82959 -11.77253 -11.70419 -11.44218 -10.87388 -10.70301 -10.58659 -9.91184 -9.46879 -8.90213 -8.21111 -6.36432 0.52916 0.87504 1.40890 1.41755 1.44408 1.52544 1.66920 1.89496 2.29540 2.44417 3.09210 3.25445 3.52660 3.65931 3.85396 3.91469 4.02092 4.15195 4.18161 4.19430 4.34302 4.37315 4.41671 4.48923 4.50030 4.52546 4.60721 4.73529 4.75699 4.89811 4.93507 4.96845 5.01021 5.01734 5.11691 5.17569 5.27952 5.30011 5.39666 5.51128 5.64024 5.84080 6.02623 6.14542 6.52958 6.78814 7.09115 7.29293 7.40253 8.84733 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014321 B = 0.004227 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.766773 B = 6621.853267 C = 7990.540085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.101 4.101 4 C -0.122 4.122 5 C 0.514 3.486 6 O -0.553 6.553 7 N -0.616 5.616 8 C 0.157 3.843 9 S -0.267 6.267 10 C -0.050 4.050 11 C 0.123 3.877 12 H 0.090 0.910 13 C 0.535 3.465 14 O -0.576 6.576 15 N -0.597 5.597 16 C 0.117 3.883 17 C -0.149 4.149 18 C 0.253 3.747 19 C -0.542 4.542 20 H 0.059 0.941 21 C 0.028 3.972 22 N -0.917 5.917 23 Si 0.950 3.050 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.264 1.264 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.042 0.958 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.097 0.903 39 H 0.128 0.872 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.048 0.952 44 H 0.085 0.915 45 H 0.020 0.980 46 H 0.019 0.981 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.591 -16.449 -2.231 17.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.140 4.140 4 C -0.161 4.161 5 C 0.304 3.696 6 O -0.430 6.430 7 N -0.353 5.353 8 C -0.076 4.076 9 S -0.040 6.040 10 C -0.200 4.200 11 C 0.014 3.986 12 H 0.108 0.892 13 C 0.321 3.679 14 O -0.457 6.457 15 N -0.328 5.328 16 C -0.006 4.006 17 C -0.207 4.207 18 C 0.133 3.867 19 C -0.580 4.580 20 H 0.077 0.923 21 C -0.173 4.173 22 N -0.555 5.555 23 Si 0.775 3.225 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.188 1.188 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.134 0.866 35 H 0.143 0.857 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.116 0.884 39 H 0.146 0.854 40 H 0.101 0.899 41 H 0.082 0.918 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.104 0.896 45 H 0.038 0.962 46 H 0.037 0.963 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.151 -16.475 -2.214 17.403 hybrid contribution -0.124 1.452 -0.350 1.499 sum -5.275 -15.023 -2.564 16.127 Atomic orbital electron populations 1.21785 0.95895 1.02160 1.01417 1.21501 0.95986 0.94587 1.03264 1.21324 0.93022 0.98025 1.01582 1.21758 0.97640 0.90075 1.06656 1.21558 0.79986 0.93757 0.74315 1.90715 1.55054 1.48016 1.49187 1.48407 1.06607 1.05358 1.74939 1.24239 0.84166 0.90995 1.08169 1.88090 1.14199 1.21179 1.80529 1.24570 0.94741 0.99025 1.01642 1.21586 0.92539 0.84399 1.00071 0.89206 1.19972 0.81691 0.82578 0.83620 1.90551 1.48937 1.73120 1.33093 1.48116 1.37639 1.08590 1.38470 1.21334 0.88254 0.95373 0.95625 1.21962 0.96733 1.01266 1.00736 1.19111 0.89229 0.92815 0.85588 1.21582 0.99748 1.40488 0.96207 0.92290 1.25604 1.01653 0.95154 0.94908 1.70017 1.36423 1.42820 1.06256 0.85665 0.79430 0.78939 0.78425 1.20230 1.20718 1.18845 0.93583 0.91283 0.93209 0.90820 0.90263 0.93036 0.93885 0.86629 0.85654 0.84852 0.85431 0.88429 0.85369 0.89926 0.91758 0.94397 0.93327 0.89635 0.96199 0.96337 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.91 71.98 0.71 -1.64 16 2 C -0.12 -1.70 5.93 30.60 0.18 -1.52 16 3 C -0.10 -2.22 4.50 30.59 0.14 -2.08 16 4 C -0.12 -2.43 4.64 29.85 0.14 -2.30 16 5 C 0.51 16.67 6.88 87.66 0.60 17.27 16 6 O -0.55 -23.47 13.13 19.37 0.25 -23.21 16 7 N -0.62 -19.31 3.13 -806.64 -2.52 -21.83 16 8 C 0.16 3.39 6.86 127.66 0.88 4.27 16 9 S -0.27 -7.56 23.34 -56.49 -1.32 -8.88 16 10 C -0.05 -1.79 6.96 72.81 0.51 -1.28 16 11 C 0.12 4.75 2.72 45.14 0.12 4.88 16 12 H 0.09 3.90 5.80 -2.39 -0.01 3.89 16 13 C 0.54 23.79 4.94 87.66 0.43 24.22 16 14 O -0.58 -27.58 14.23 19.36 0.28 -27.31 16 15 N -0.60 -26.92 2.48 -826.16 -2.05 -28.97 16 16 C 0.12 4.67 6.09 86.38 0.53 5.20 16 17 C -0.15 -5.42 10.21 71.98 0.74 -4.68 16 18 C 0.25 12.41 4.94 85.63 0.42 12.84 16 19 C -0.54 -27.30 7.88 25.60 0.20 -27.10 16 20 H 0.06 2.98 7.81 -2.91 -0.02 2.95 16 21 C 0.03 1.43 5.46 84.66 0.46 1.89 16 22 N -0.92 -49.81 13.29 21.45 0.28 -49.53 16 23 Si 0.95 40.61 29.54 68.60 2.03 42.64 16 24 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 27 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 1.29 8.10 -2.38 -0.02 1.27 16 33 H 0.04 1.17 8.10 -2.39 -0.02 1.15 16 34 H 0.12 1.81 8.06 -2.39 -0.02 1.79 16 35 H 0.13 1.64 8.11 -2.39 -0.02 1.62 16 36 H 0.13 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.13 1.99 7.98 -2.38 -0.02 1.97 16 38 H 0.10 3.39 8.10 -2.39 -0.02 3.37 16 39 H 0.13 5.06 6.73 -2.38 -0.02 5.04 16 40 H 0.08 3.13 8.04 -2.39 -0.02 3.12 16 41 H 0.06 2.59 7.50 -2.39 -0.02 2.57 16 42 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 45 H 0.02 1.04 8.03 -2.39 -0.02 1.02 16 46 H 0.02 0.98 5.91 -2.38 -0.01 0.96 16 47 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -67.67 388.22 3.95 -63.72 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.94 Total: 23.41 kcal Atomic # 6 Polarization: 23.91 SS G_CDS: 6.06 Total: 29.97 kcal Atomic # 7 Polarization: -96.05 SS G_CDS: -4.28 Total: -100.33 kcal Atomic # 8 Polarization: -51.05 SS G_CDS: 0.53 Total: -50.52 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Atomic # 16 Polarization: -7.56 SS G_CDS: -1.32 Total: -8.88 kcal Total: -67.67 3.95 -63.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133568870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.465 kcal (2) G-P(sol) polarization free energy of solvation -67.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds