Wall clock time and date at job start Tue Mar 31 2020 14:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46965 * 2 1 4 4 C 1.38135 * 120.03973 * 265.56084 * 3 2 1 5 5 C 1.38249 * 120.07313 * 180.02562 * 4 3 2 6 6 C 1.38307 * 120.14255 * 0.02562 * 5 4 3 7 7 C 1.38095 * 120.06521 * 359.74264 * 6 5 4 8 8 C 1.38848 * 120.03374 * 85.58885 * 3 2 1 9 9 N 1.39946 * 120.06835 * 359.95230 * 8 3 2 10 10 C 1.34773 * 120.00027 * 146.48336 * 9 8 3 11 11 O 1.21589 * 119.99912 * 4.68724 * 10 9 8 12 12 N 1.34781 * 119.99950 * 184.68229 * 10 9 8 13 13 C 1.46493 * 119.99748 * 174.98530 * 12 10 9 14 14 C 1.50701 * 109.47465 * 90.00349 * 13 12 10 15 15 H 1.08003 * 119.99459 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00252 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00313 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99974 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46962 * 89.99637 * 18 16 14 20 20 H 1.48498 * 109.46984 * 209.99585 * 18 16 14 21 21 H 1.48497 * 109.46965 * 329.99609 * 18 16 14 22 22 C 1.46496 * 119.99870 * 354.98454 * 12 10 9 23 23 C 1.50700 * 109.47219 * 275.12332 * 22 12 10 24 24 C 1.34516 * 125.78858 * 94.82517 * 23 22 12 25 25 C 1.41379 * 106.84062 * 179.88626 * 24 23 22 26 26 C 1.34518 * 106.84141 * 0.37183 * 25 24 23 27 27 O 1.34302 * 108.42010 * 359.77374 * 26 25 24 28 28 H 1.08995 * 109.47392 * 64.98674 * 1 2 3 29 29 H 1.09001 * 109.46898 * 184.99342 * 1 2 3 30 30 H 1.09002 * 109.46811 * 304.99092 * 1 2 3 31 31 H 1.09007 * 109.46966 * 240.00656 * 2 1 3 32 32 H 1.08996 * 109.47523 * 120.00262 * 2 1 3 33 33 H 1.08000 * 119.96025 * 0.04624 * 4 3 2 34 34 H 1.08006 * 119.93083 * 179.97438 * 5 4 3 35 35 H 1.08002 * 119.96885 * 180.02562 * 6 5 4 36 36 H 1.08001 * 120.03655 * 180.28047 * 7 6 5 37 37 H 0.97006 * 119.99698 * 326.47768 * 9 8 3 38 38 H 1.09000 * 109.46956 * 210.00296 * 13 12 10 39 39 H 1.09001 * 109.47375 * 330.00094 * 13 12 10 40 40 H 0.96999 * 120.00284 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.46986 * 35.12676 * 22 12 10 42 42 H 1.09002 * 109.46848 * 155.12175 * 22 12 10 43 43 H 1.08001 * 126.57618 * 0.02562 * 24 23 22 44 44 H 1.08001 * 126.57999 * 180.15940 * 25 24 23 45 45 H 1.07993 * 125.78853 * 179.74822 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3500 2.0420 -1.1922 5 6 2.8114 3.3452 -1.1930 6 6 2.9569 4.0311 -0.0008 7 6 2.6364 3.4174 1.1940 8 6 2.1767 2.1069 1.1985 9 7 1.8553 1.4806 2.4080 10 6 2.5526 1.7721 3.5239 11 8 3.4035 2.6403 3.4997 12 7 2.3065 1.1014 4.6668 13 6 3.1373 1.3401 5.8495 14 6 2.5363 2.4526 6.6694 15 1 1.6266 2.9340 6.3419 16 6 3.1482 2.8566 7.8370 17 7 4.2562 2.2708 8.2355 18 14 2.4036 4.2361 8.8528 19 1 1.4527 3.6657 9.8407 20 1 3.4834 4.9629 9.5677 21 1 1.6826 5.1764 7.9577 22 6 1.2083 0.1336 4.7262 23 6 -0.0788 0.8529 5.0378 24 6 -0.9757 1.2874 4.1345 25 6 -2.0244 1.8984 4.8596 26 6 -1.7015 1.8080 6.1624 27 8 -0.5220 1.1739 6.2643 28 1 -0.3634 0.4345 -0.9312 29 1 -0.3633 -1.0238 0.0895 30 1 -0.3633 0.5893 0.8419 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.2376 1.5090 -2.1248 34 1 3.0595 3.8285 -2.1265 35 1 3.3171 5.0493 -0.0047 36 1 2.7459 3.9550 2.1243 37 1 1.1306 0.8368 2.4432 38 1 3.1848 0.4314 6.4496 39 1 4.1427 1.6217 5.5365 40 1 4.6865 2.5548 9.0572 41 1 1.1181 -0.3729 3.7652 42 1 1.4125 -0.6002 5.5059 43 1 -0.9088 1.1866 3.0612 44 1 -2.9124 2.3537 4.4467 45 1 -2.2906 2.1824 6.9864 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156063509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:44 Heat of formation + Delta-G solvation = 21.027397 kcal Electronic energy + Delta-G solvation = -28696.295490 eV Core-core repulsion = 24873.947013 eV Total energy + Delta-G solvation = -3822.348477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.20092 -40.43652 -38.60397 -35.39827 -34.74395 -33.72972 -32.75321 -32.46109 -30.17116 -29.75947 -28.99206 -27.13435 -25.46662 -23.91185 -23.42344 -22.05383 -21.45583 -20.73727 -20.52541 -19.33539 -18.03366 -17.28540 -16.89600 -16.36528 -15.78348 -15.42998 -15.28557 -15.05204 -14.66932 -14.40299 -14.07274 -13.77890 -13.65085 -13.50327 -13.24227 -13.10552 -12.65248 -12.52584 -12.44884 -12.23904 -12.10893 -11.84734 -11.69025 -11.53634 -11.21493 -10.99837 -10.90352 -10.86670 -10.59134 -10.17917 -10.01631 -9.67308 -9.59698 -9.28805 -8.56526 -8.40928 -8.26513 -7.99482 -7.65185 -6.01349 -4.03496 1.49209 1.61659 2.03189 2.84265 3.18857 3.31920 3.32705 3.38591 3.44208 3.70463 4.05934 4.33694 4.50892 4.74116 4.83634 4.98033 5.10794 5.13557 5.20071 5.25187 5.29971 5.33309 5.34203 5.41986 5.53427 5.64661 5.65653 5.75682 5.84325 5.93541 6.03492 6.06344 6.13146 6.22131 6.36992 6.46512 6.57043 6.72896 6.75216 6.81056 6.84537 7.28087 7.33239 7.40285 7.51831 7.62465 7.96098 8.23975 8.44100 8.95497 9.14962 9.60617 11.07280 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012021 B = 0.004531 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.694390 B = 6178.058457 C = 7390.612335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 C -0.122 4.122 4 C -0.102 4.102 5 C -0.145 4.145 6 C -0.106 4.106 7 C -0.120 4.120 8 C 0.181 3.819 9 N -0.693 5.693 10 C 0.701 3.299 11 O -0.557 6.557 12 N -0.603 5.603 13 C 0.260 3.740 14 C -0.514 4.514 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.897 5.897 18 Si 0.895 3.105 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.187 3.813 23 C -0.009 4.009 24 C -0.217 4.217 25 C -0.220 4.220 26 C -0.039 4.039 27 O -0.147 6.147 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.146 0.854 37 H 0.398 0.602 38 H 0.036 0.964 39 H 0.047 0.953 40 H 0.262 0.738 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.137 0.863 44 H 0.142 0.858 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.485 -5.711 -15.488 19.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.121 4.121 3 C -0.125 4.125 4 C -0.121 4.121 5 C -0.165 4.165 6 C -0.124 4.124 7 C -0.140 4.140 8 C 0.085 3.915 9 N -0.342 5.342 10 C 0.404 3.596 11 O -0.432 6.432 12 N -0.338 5.338 13 C 0.141 3.859 14 C -0.553 4.553 15 H 0.075 0.925 16 C -0.139 4.139 17 N -0.537 5.537 18 Si 0.723 3.277 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.200 1.200 22 C 0.062 3.938 23 C -0.062 4.062 24 C -0.237 4.237 25 C -0.239 4.239 26 C -0.108 4.108 27 O -0.040 6.040 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.163 0.837 37 H 0.236 0.764 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.107 0.893 42 H 0.121 0.879 43 H 0.155 0.845 44 H 0.160 0.840 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -9.496 -5.187 -14.930 18.439 hybrid contribution -1.035 0.744 0.585 1.403 sum -10.531 -4.443 -14.345 18.342 Atomic orbital electron populations 1.21801 0.94962 1.01669 1.02235 1.20452 0.95847 0.92860 1.02925 1.19594 1.04708 0.96051 0.92181 1.20705 0.99822 0.95058 0.96490 1.21008 1.02431 0.95152 0.97864 1.21046 0.99494 0.99860 0.92032 1.21505 0.99646 0.93208 0.99655 1.17404 0.98663 0.91382 0.84060 1.43023 1.37438 1.46730 1.07054 1.15930 0.81717 0.82075 0.79920 1.90898 1.36330 1.32444 1.83569 1.47727 1.32178 1.41687 1.12188 1.19354 0.90371 0.96888 0.79282 1.21357 1.09739 1.18074 1.06099 0.92491 1.24864 0.94844 0.96744 0.97476 1.69919 1.18175 1.42144 1.23471 0.86543 0.78762 0.82296 0.80121 1.20707 1.21184 1.20042 1.19796 0.81174 0.90600 1.02212 1.23017 0.97580 1.03272 0.82346 1.21433 0.96412 1.06345 0.99552 1.21667 1.01768 1.07093 0.93401 1.24006 0.87052 1.00934 0.98786 1.84179 1.31382 1.57626 1.30812 0.92298 0.92219 0.92936 0.90796 0.91303 0.86284 0.86523 0.86135 0.83659 0.76434 0.94592 0.93481 0.92817 0.89347 0.87892 0.84510 0.84031 0.78679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.80 37.16 0.36 -0.90 16 2 C -0.08 -0.83 5.46 -27.88 -0.15 -0.98 16 3 C -0.12 -1.57 5.15 -104.43 -0.54 -2.11 16 4 C -0.10 -1.19 9.68 -39.61 -0.38 -1.57 16 5 C -0.15 -1.75 10.04 -39.55 -0.40 -2.15 16 6 C -0.11 -1.49 10.04 -39.61 -0.40 -1.89 16 7 C -0.12 -2.05 8.71 -39.39 -0.34 -2.40 16 8 C 0.18 2.88 6.31 -83.69 -0.53 2.36 16 9 N -0.69 -11.29 4.67 -14.22 -0.07 -11.35 16 10 C 0.70 14.75 8.08 -86.92 -0.70 14.05 16 11 O -0.56 -14.04 13.32 5.29 0.07 -13.97 16 12 N -0.60 -12.51 2.45 -182.19 -0.45 -12.96 16 13 C 0.26 6.64 5.16 -5.20 -0.03 6.62 16 14 C -0.51 -14.48 9.39 -34.44 -0.32 -14.81 16 15 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 18 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 C 0.19 2.98 5.74 -5.20 -0.03 2.95 16 23 C -0.01 -0.15 6.86 -35.62 -0.24 -0.40 16 24 C -0.22 -3.24 10.40 -39.70 -0.41 -3.65 16 25 C -0.22 -3.15 10.91 -39.70 -0.43 -3.58 16 26 C -0.04 -0.59 12.09 29.42 0.36 -0.23 16 27 O -0.15 -2.73 10.65 5.70 0.06 -2.67 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.48 7.31 -51.93 -0.38 0.10 16 31 H 0.07 0.63 8.06 -51.92 -0.42 0.21 16 32 H 0.07 0.71 7.38 -51.93 -0.38 0.33 16 33 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 35 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.15 2.93 6.12 -52.49 -0.32 2.61 16 37 H 0.40 5.35 3.71 -40.82 -0.15 5.20 16 38 H 0.04 0.92 7.86 -51.93 -0.41 0.51 16 39 H 0.05 1.36 7.50 -51.93 -0.39 0.97 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.09 1.05 6.51 -51.93 -0.34 0.71 16 42 H 0.10 1.55 7.83 -51.93 -0.41 1.14 16 43 H 0.14 1.73 7.16 -52.49 -0.38 1.35 16 44 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 45 H 0.20 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 376.64 15.07 5.68 5.68 Total: -1.00 -34.16 376.64 -9.36 -43.51 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -6.08 Total: 7.35 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -4.29 Total: -7.02 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.22 Total: -50.16 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.13 Total: -16.64 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.16 -9.36 -43.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156063509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.541 kcal (2) G-P(sol) polarization free energy of solvation -34.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds