Wall clock time and date at job start Tue Mar 31 2020 14:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46965 * 2 1 4 4 C 1.38135 * 120.03973 * 265.56084 * 3 2 1 5 5 C 1.38249 * 120.07313 * 180.02562 * 4 3 2 6 6 C 1.38307 * 120.14255 * 0.02562 * 5 4 3 7 7 C 1.38095 * 120.06521 * 359.74264 * 6 5 4 8 8 C 1.38848 * 120.03374 * 85.58885 * 3 2 1 9 9 N 1.39946 * 120.06835 * 359.95230 * 8 3 2 10 10 C 1.34773 * 120.00027 * 146.48336 * 9 8 3 11 11 O 1.21589 * 119.99912 * 4.68724 * 10 9 8 12 12 N 1.34781 * 119.99950 * 184.68229 * 10 9 8 13 13 C 1.46493 * 119.99748 * 174.98530 * 12 10 9 14 14 C 1.50701 * 109.47465 * 90.00349 * 13 12 10 15 15 H 1.08003 * 119.99459 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00252 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00313 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99974 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46962 * 89.99637 * 18 16 14 20 20 H 1.48498 * 109.46984 * 209.99585 * 18 16 14 21 21 H 1.48497 * 109.46965 * 329.99609 * 18 16 14 22 22 C 1.46496 * 119.99870 * 354.98454 * 12 10 9 23 23 C 1.50700 * 109.47219 * 275.12332 * 22 12 10 24 24 C 1.34516 * 125.78858 * 94.82517 * 23 22 12 25 25 C 1.41379 * 106.84062 * 179.88626 * 24 23 22 26 26 C 1.34518 * 106.84141 * 0.37183 * 25 24 23 27 27 O 1.34302 * 108.42010 * 359.77374 * 26 25 24 28 28 H 1.08995 * 109.47392 * 64.98674 * 1 2 3 29 29 H 1.09001 * 109.46898 * 184.99342 * 1 2 3 30 30 H 1.09002 * 109.46811 * 304.99092 * 1 2 3 31 31 H 1.09007 * 109.46966 * 240.00656 * 2 1 3 32 32 H 1.08996 * 109.47523 * 120.00262 * 2 1 3 33 33 H 1.08000 * 119.96025 * 0.04624 * 4 3 2 34 34 H 1.08006 * 119.93083 * 179.97438 * 5 4 3 35 35 H 1.08002 * 119.96885 * 180.02562 * 6 5 4 36 36 H 1.08001 * 120.03655 * 180.28047 * 7 6 5 37 37 H 0.97006 * 119.99698 * 326.47768 * 9 8 3 38 38 H 1.09000 * 109.46956 * 210.00296 * 13 12 10 39 39 H 1.09001 * 109.47375 * 330.00094 * 13 12 10 40 40 H 0.96999 * 120.00284 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.46986 * 35.12676 * 22 12 10 42 42 H 1.09002 * 109.46848 * 155.12175 * 22 12 10 43 43 H 1.08001 * 126.57618 * 0.02562 * 24 23 22 44 44 H 1.08001 * 126.57999 * 180.15940 * 25 24 23 45 45 H 1.07993 * 125.78853 * 179.74822 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3500 2.0420 -1.1922 5 6 2.8114 3.3452 -1.1930 6 6 2.9569 4.0311 -0.0008 7 6 2.6364 3.4174 1.1940 8 6 2.1767 2.1069 1.1985 9 7 1.8553 1.4806 2.4080 10 6 2.5526 1.7721 3.5239 11 8 3.4035 2.6403 3.4997 12 7 2.3065 1.1014 4.6668 13 6 3.1373 1.3401 5.8495 14 6 2.5363 2.4526 6.6694 15 1 1.6266 2.9340 6.3419 16 6 3.1482 2.8566 7.8370 17 7 4.2562 2.2708 8.2355 18 14 2.4036 4.2361 8.8528 19 1 1.4527 3.6657 9.8407 20 1 3.4834 4.9629 9.5677 21 1 1.6826 5.1764 7.9577 22 6 1.2083 0.1336 4.7262 23 6 -0.0788 0.8529 5.0378 24 6 -0.9757 1.2874 4.1345 25 6 -2.0244 1.8984 4.8596 26 6 -1.7015 1.8080 6.1624 27 8 -0.5220 1.1739 6.2643 28 1 -0.3634 0.4345 -0.9312 29 1 -0.3633 -1.0238 0.0895 30 1 -0.3633 0.5893 0.8419 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.2376 1.5090 -2.1248 34 1 3.0595 3.8285 -2.1265 35 1 3.3171 5.0493 -0.0047 36 1 2.7459 3.9550 2.1243 37 1 1.1306 0.8368 2.4432 38 1 3.1848 0.4314 6.4496 39 1 4.1427 1.6217 5.5365 40 1 4.6865 2.5548 9.0572 41 1 1.1181 -0.3729 3.7652 42 1 1.4125 -0.6002 5.5059 43 1 -0.9088 1.1866 3.0612 44 1 -2.9124 2.3537 4.4467 45 1 -2.2906 2.1824 6.9864 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156063509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:43 Heat of formation + Delta-G solvation = 1.679816 kcal Electronic energy + Delta-G solvation = -28697.134464 eV Core-core repulsion = 24873.947013 eV Total energy + Delta-G solvation = -3823.187451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.43332 -41.81577 -39.89441 -37.03746 -36.04277 -34.89221 -34.56621 -33.82107 -31.58026 -30.90219 -30.10147 -28.90188 -26.84243 -25.29577 -24.69846 -23.44831 -22.66230 -21.82459 -21.74955 -20.76974 -19.41690 -18.78026 -18.53181 -17.90262 -17.06784 -16.75826 -16.62730 -16.56384 -16.23311 -15.79380 -15.34534 -14.95446 -14.84486 -14.56920 -14.49747 -14.38879 -14.02514 -13.93622 -13.66374 -13.60672 -13.38744 -13.14854 -13.02124 -12.75165 -12.70506 -12.57560 -12.44747 -12.19091 -11.84954 -11.79903 -11.75323 -11.34357 -10.91739 -10.78481 -10.62154 -9.82943 -9.61592 -9.37279 -8.93279 -8.21042 -6.31375 0.41070 0.52072 0.78069 1.31705 1.34558 1.44097 1.62635 1.81691 2.04658 2.29536 2.38097 2.91418 2.98035 3.10024 3.79316 3.87143 3.93833 3.98039 4.11626 4.22346 4.25519 4.35482 4.40772 4.47245 4.52723 4.63952 4.68893 4.81728 4.84719 4.92125 4.96377 5.10763 5.13477 5.16851 5.21277 5.23001 5.43302 5.44476 5.48674 5.56440 5.65281 5.66689 5.71034 5.76642 6.00691 6.07120 6.19730 6.31739 6.74160 6.93179 7.33059 7.55791 8.86308 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012021 B = 0.004531 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.694390 B = 6178.058457 C = 7390.612335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.114 4.114 4 C -0.097 4.097 5 C -0.135 4.135 6 C -0.117 4.117 7 C -0.153 4.153 8 C 0.150 3.850 9 N -0.671 5.671 10 C 0.698 3.302 11 O -0.611 6.611 12 N -0.607 5.607 13 C 0.277 3.723 14 C -0.520 4.520 15 H 0.042 0.958 16 C 0.012 3.988 17 N -0.927 5.927 18 Si 0.956 3.044 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.281 1.281 22 C 0.183 3.817 23 C -0.041 4.041 24 C -0.208 4.208 25 C -0.222 4.222 26 C -0.052 4.052 27 O -0.183 6.183 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.097 0.903 32 H 0.063 0.937 33 H 0.159 0.841 34 H 0.151 0.849 35 H 0.130 0.870 36 H 0.100 0.900 37 H 0.412 0.588 38 H 0.033 0.967 39 H 0.004 0.996 40 H 0.266 0.734 41 H 0.132 0.868 42 H 0.107 0.893 43 H 0.160 0.840 44 H 0.171 0.829 45 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.816 -6.553 -18.212 23.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.117 4.117 4 C -0.116 4.116 5 C -0.153 4.153 6 C -0.136 4.136 7 C -0.173 4.173 8 C 0.055 3.945 9 N -0.321 5.321 10 C 0.400 3.600 11 O -0.490 6.490 12 N -0.341 5.341 13 C 0.156 3.844 14 C -0.559 4.559 15 H 0.060 0.940 16 C -0.187 4.187 17 N -0.568 5.568 18 Si 0.782 3.218 19 H -0.189 1.189 20 H -0.205 1.205 21 H -0.206 1.206 22 C 0.060 3.940 23 C -0.093 4.093 24 C -0.228 4.228 25 C -0.241 4.241 26 C -0.120 4.120 27 O -0.078 6.078 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.176 0.824 34 H 0.169 0.831 35 H 0.148 0.852 36 H 0.118 0.882 37 H 0.252 0.748 38 H 0.051 0.949 39 H 0.022 0.978 40 H 0.075 0.925 41 H 0.149 0.851 42 H 0.125 0.875 43 H 0.177 0.823 44 H 0.189 0.811 45 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -11.886 -6.071 -17.698 22.166 hybrid contribution -0.344 1.018 1.291 1.680 sum -12.229 -5.053 -16.407 21.078 Atomic orbital electron populations 1.21798 0.93568 1.02832 1.02243 1.20564 0.96965 0.90786 1.03856 1.19959 1.03218 0.97342 0.91139 1.21211 0.97980 0.94930 0.97443 1.21415 1.00516 0.95342 0.98058 1.21218 0.99745 1.00638 0.91961 1.21330 1.02491 0.94391 0.99126 1.17656 1.00712 0.91425 0.84708 1.42624 1.36983 1.46568 1.05966 1.16117 0.81542 0.81496 0.80868 1.90865 1.38736 1.34762 1.84590 1.47504 1.33094 1.42680 1.10846 1.18781 0.89130 0.95883 0.80579 1.21493 1.09172 1.18656 1.06578 0.93992 1.25665 0.95279 0.99054 0.98669 1.70019 1.19233 1.43492 1.24029 0.85585 0.78301 0.79278 0.78672 1.18881 1.20484 1.20616 1.20142 0.79511 0.89584 1.04760 1.23166 0.98429 1.05141 0.82516 1.21784 0.95813 1.04725 1.00460 1.22080 1.02466 1.06554 0.93023 1.24750 0.86339 1.00370 1.00516 1.84139 1.32944 1.58729 1.32022 0.91520 0.90299 0.93941 0.88456 0.91862 0.82365 0.83092 0.85228 0.88161 0.74754 0.94905 0.97762 0.92535 0.85085 0.87460 0.82273 0.81114 0.75899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.80 71.98 0.71 -1.22 16 2 C -0.08 -1.38 5.46 29.85 0.16 -1.22 16 3 C -0.11 -2.64 5.15 -19.74 -0.10 -2.75 16 4 C -0.10 -1.89 9.68 22.25 0.22 -1.68 16 5 C -0.13 -2.85 10.04 22.29 0.22 -2.63 16 6 C -0.12 -3.29 10.04 22.25 0.22 -3.07 16 7 C -0.15 -5.51 8.71 22.39 0.19 -5.32 16 8 C 0.15 4.79 6.31 38.15 0.24 5.03 16 9 N -0.67 -22.12 4.67 -317.18 -1.48 -23.60 16 10 C 0.70 30.90 8.08 179.05 1.45 32.35 16 11 O -0.61 -33.27 13.32 -4.00 -0.05 -33.32 16 12 N -0.61 -26.37 2.45 -848.58 -2.08 -28.45 16 13 C 0.28 15.07 5.16 85.63 0.44 15.51 16 14 C -0.52 -30.68 9.39 25.60 0.24 -30.44 16 15 H 0.04 2.56 7.81 -2.91 -0.02 2.53 16 16 C 0.01 0.70 5.46 84.65 0.46 1.17 16 17 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 18 Si 0.96 46.76 29.54 68.60 2.03 48.78 16 19 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 21 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 22 C 0.18 5.85 5.74 85.63 0.49 6.34 16 23 C -0.04 -1.37 6.86 24.83 0.17 -1.19 16 24 C -0.21 -5.89 10.40 22.19 0.23 -5.66 16 25 C -0.22 -5.93 10.91 22.19 0.24 -5.69 16 26 C -0.05 -1.53 12.09 66.97 0.81 -0.72 16 27 O -0.18 -6.88 10.65 -2.51 -0.03 -6.91 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.04 0.64 7.31 -2.39 -0.02 0.62 16 31 H 0.10 1.18 8.06 -2.38 -0.02 1.16 16 32 H 0.06 1.12 7.38 -2.39 -0.02 1.11 16 33 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 34 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 35 H 0.13 3.23 8.06 -2.91 -0.02 3.20 16 36 H 0.10 4.50 6.12 -2.91 -0.02 4.48 16 37 H 0.41 10.67 3.71 -92.70 -0.34 10.32 16 38 H 0.03 1.78 7.86 -2.39 -0.02 1.76 16 39 H 0.00 0.27 7.50 -2.39 -0.02 0.25 16 40 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.13 2.93 6.51 -2.39 -0.02 2.92 16 42 H 0.11 3.29 7.83 -2.39 -0.02 3.27 16 43 H 0.16 3.63 7.16 -2.91 -0.02 3.61 16 44 H 0.17 3.43 8.06 -2.91 -0.02 3.41 16 45 H 0.22 4.83 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -80.47 376.64 5.73 -74.73 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.66 Total: 26.37 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 6.40 Total: -1.16 kcal Atomic # 7 Polarization: -105.21 SS G_CDS: -3.28 Total: -108.49 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -0.08 Total: -40.23 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.78 kcal Total: -80.47 5.73 -74.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156063509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.413 kcal (2) G-P(sol) polarization free energy of solvation -80.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds