Wall clock time and date at job start Tue Mar 31 2020 15:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 C 1.35314 * 126.66592 * 239.71083 * 4 2 1 6 6 C 1.42272 * 103.91708 * 179.91146 * 5 4 2 7 7 C 1.48332 * 126.93453 * 180.13248 * 6 5 4 8 8 O 1.21503 * 120.00338 * 0.24503 * 7 6 5 9 9 N 1.34778 * 120.00144 * 180.24704 * 7 6 5 10 10 C 1.46492 * 120.00475 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.47213 * 34.99906 * 10 9 7 12 12 C 1.53000 * 109.47299 * 155.00132 * 10 9 7 13 13 C 1.50695 * 109.46884 * 294.99839 * 12 10 9 14 14 H 1.08005 * 120.00435 * 0.02562 * 13 12 10 15 15 C 1.37876 * 119.99910 * 179.97438 * 13 12 10 16 16 N 1.31518 * 120.00181 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99904 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47306 * 89.99624 * 17 15 13 19 19 H 1.48509 * 109.47021 * 209.99510 * 17 15 13 20 20 H 1.48496 * 109.47063 * 329.99250 * 17 15 13 21 21 C 1.50708 * 109.47471 * 275.00430 * 10 9 7 22 22 C 1.38232 * 119.99360 * 319.72364 * 21 10 9 23 23 C 1.38237 * 119.99543 * 179.80767 * 22 21 10 24 24 C 1.38232 * 120.00031 * 0.40110 * 23 22 21 25 25 C 1.38235 * 120.00237 * 359.85258 * 24 23 22 26 26 C 1.38232 * 120.00281 * 139.99752 * 21 10 9 27 27 N 1.30983 * 106.12793 * 0.35715 * 6 5 4 28 28 O 1.20909 * 111.43529 * 359.77035 * 27 6 5 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 35 35 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 36 36 H 1.08000 * 128.04151 * 0.02562 * 5 4 2 37 37 H 0.97005 * 119.99438 * 359.97438 * 9 7 6 38 38 H 1.09001 * 109.47022 * 55.00082 * 12 10 9 39 39 H 1.09003 * 109.47113 * 175.00066 * 12 10 9 40 40 H 0.97002 * 120.00183 * 180.02562 * 16 15 13 41 41 H 1.08004 * 120.00307 * 359.97438 * 22 21 10 42 42 H 1.08003 * 120.00136 * 180.22772 * 23 22 21 43 43 H 1.08004 * 119.99971 * 179.83397 * 24 23 22 44 44 H 1.07997 * 120.00472 * 179.97438 * 25 24 23 45 45 H 1.07997 * 119.99962 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 2.8178 -1.8118 -1.2636 6 6 2.9918 -2.0664 -2.6525 7 6 3.7717 -3.1691 -3.2657 8 8 4.3424 -3.9759 -2.5587 9 7 3.8474 -3.2762 -4.6071 10 6 4.6181 -4.3649 -5.2127 11 1 4.5293 -5.2595 -4.5964 12 6 4.0765 -4.6551 -6.6139 13 6 2.6660 -5.1753 -6.5094 14 1 2.2021 -5.2873 -5.5406 15 6 1.9674 -5.5073 -7.6508 16 7 0.7363 -5.9608 -7.5597 17 14 2.7695 -5.3129 -9.3266 18 1 3.4706 -6.5708 -9.6887 19 1 1.7278 -5.0166 -10.3426 20 1 3.7477 -4.1966 -9.2806 21 6 6.0673 -3.9623 -5.3077 22 6 6.4035 -2.6722 -5.6731 23 6 7.7327 -2.3018 -5.7564 24 6 8.7257 -3.2236 -5.4823 25 6 8.3894 -4.5151 -5.1220 26 6 7.0602 -4.8845 -5.0350 27 7 2.3284 -1.1277 -3.2804 28 8 1.7927 -0.3707 -2.5045 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 3.1300 1.4424 0.0005 36 1 3.2179 -2.3692 -0.4296 37 1 3.3915 -2.6323 -5.1714 38 1 4.0829 -3.7380 -7.2030 39 1 4.7045 -5.4027 -7.0986 40 1 0.2449 -6.1947 -8.3627 41 1 5.6278 -1.9530 -5.8909 42 1 7.9955 -1.2928 -6.0383 43 1 9.7642 -2.9349 -5.5500 44 1 9.1652 -5.2355 -4.9083 45 1 6.7975 -5.8935 -4.7534 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156195752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:03 Heat of formation + Delta-G solvation = 35.132359 kcal Electronic energy + Delta-G solvation = -27412.964339 eV Core-core repulsion = 23591.227500 eV Total energy + Delta-G solvation = -3821.736840 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.02512 -39.72810 -38.47110 -36.32356 -35.38945 -33.86994 -32.67755 -31.38570 -30.66359 -30.47527 -29.32491 -27.50208 -25.72562 -24.24865 -23.20235 -22.41695 -22.04350 -21.79425 -19.99085 -19.47585 -17.70545 -17.39740 -17.11558 -16.61325 -16.40411 -15.66260 -15.29412 -15.00826 -14.55543 -14.35785 -14.24078 -14.13878 -13.61140 -13.55272 -13.32052 -13.12697 -12.97017 -12.65192 -12.52430 -12.42313 -11.96075 -11.77778 -11.66314 -11.60452 -11.38196 -11.16044 -11.09948 -10.75938 -10.68190 -10.34335 -10.21372 -9.88544 -9.84468 -9.47561 -9.35454 -8.67584 -8.62294 -8.59697 -8.34793 -6.11394 -4.11677 1.24998 1.63784 1.68157 1.74375 2.91762 3.25233 3.33205 3.35375 3.37019 3.51097 4.06633 4.12631 4.37517 4.37816 4.59038 4.72041 4.96735 5.04912 5.13928 5.16169 5.22177 5.23794 5.29996 5.31717 5.38250 5.42881 5.48985 5.57480 5.65432 5.78395 5.79914 5.87381 5.89237 5.94311 6.00155 6.19103 6.27325 6.38074 6.66010 6.72358 6.73787 6.90014 7.00443 7.25106 7.28015 7.63083 7.84973 8.15012 8.42329 8.51365 8.93464 9.48889 11.01408 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009192 B = 0.003971 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3045.348330 B = 7049.528121 C = 9243.637151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.010 4.010 3 C -0.151 4.151 4 C -0.035 4.035 5 C -0.181 4.181 6 C -0.017 4.017 7 C 0.596 3.404 8 O -0.531 6.531 9 N -0.682 5.682 10 C 0.194 3.806 11 H 0.096 0.904 12 C -0.014 4.014 13 C -0.523 4.523 14 H 0.075 0.925 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.875 3.125 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.265 1.265 21 C -0.079 4.079 22 C -0.109 4.109 23 C -0.124 4.124 24 C -0.132 4.132 25 C -0.122 4.122 26 C -0.106 4.106 27 N -0.327 5.327 28 O 0.123 5.877 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.178 0.822 37 H 0.408 0.592 38 H 0.024 0.976 39 H 0.033 0.967 40 H 0.264 0.736 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.118 0.882 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.926 13.556 13.088 20.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 C -0.208 4.208 4 C -0.098 4.098 5 C -0.203 4.203 6 C -0.176 4.176 7 C 0.379 3.621 8 O -0.407 6.407 9 N -0.331 5.331 10 C 0.090 3.910 11 H 0.114 0.886 12 C -0.051 4.051 13 C -0.561 4.561 14 H 0.093 0.907 15 C -0.130 4.130 16 N -0.535 5.535 17 Si 0.703 3.297 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.080 4.080 22 C -0.127 4.127 23 C -0.142 4.142 24 C -0.150 4.150 25 C -0.140 4.140 26 C -0.124 4.124 27 N -0.028 5.028 28 O 0.047 5.953 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.196 0.804 37 H 0.243 0.757 38 H 0.043 0.957 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.136 0.864 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.012 13.116 12.125 19.188 hybrid contribution 0.286 -0.091 -0.604 0.674 sum 7.298 13.025 11.521 18.859 Atomic orbital electron populations 1.21906 0.93044 1.02991 1.02996 1.19782 0.96813 0.96015 0.90312 1.21897 1.01657 0.94260 1.03002 1.24437 1.00432 0.97595 0.87346 1.22414 1.02691 0.98561 0.96668 1.23627 1.02725 0.98542 0.92749 1.16860 0.79806 0.82635 0.82816 1.90757 1.46434 1.41660 1.61845 1.45789 1.51016 1.31031 1.05235 1.20066 0.84365 0.88996 0.97550 0.88619 1.19883 0.97670 0.97536 0.90039 1.20997 0.96122 1.43758 0.95221 0.90675 1.24975 0.94646 0.94378 0.99002 1.69907 1.10360 1.44009 1.29198 0.86850 0.79414 0.79205 0.84275 1.20142 1.21273 1.18944 1.20530 0.96411 0.93953 0.97124 1.20953 0.96087 0.96116 0.99551 1.21056 0.93005 0.99232 1.00949 1.21032 0.98812 0.93922 1.01238 1.21066 0.96092 0.96314 1.00558 1.21039 0.92382 0.99612 0.99402 1.74223 1.09149 1.02831 1.16566 1.84758 1.54378 1.42655 1.13461 0.91624 0.91319 0.91875 0.87839 0.91664 0.91322 0.92065 0.80447 0.75661 0.95731 0.94926 0.92597 0.86525 0.86602 0.86671 0.86386 0.85876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.18 37.16 0.34 -0.70 16 2 C -0.01 -0.07 3.34 -91.77 -0.31 -0.38 16 3 C -0.15 -0.94 9.17 37.15 0.34 -0.60 16 4 C -0.03 -0.40 5.98 -35.35 -0.21 -0.61 16 5 C -0.18 -2.46 10.91 -39.07 -0.43 -2.89 16 6 C -0.02 -0.29 7.19 -82.53 -0.59 -0.88 16 7 C 0.60 11.70 7.81 -12.11 -0.09 11.61 16 8 O -0.53 -11.51 16.62 5.36 0.09 -11.42 16 9 N -0.68 -13.40 4.04 -55.72 -0.23 -13.63 16 10 C 0.19 3.97 2.11 -69.08 -0.15 3.82 16 11 H 0.10 2.11 7.44 -51.93 -0.39 1.73 16 12 C -0.01 -0.31 3.56 -27.89 -0.10 -0.41 16 13 C -0.52 -14.39 9.39 -34.44 -0.32 -14.71 16 14 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 15 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 16 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 17 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 21 C -0.08 -1.44 4.91 -104.62 -0.51 -1.95 16 22 C -0.11 -1.81 9.32 -39.58 -0.37 -2.18 16 23 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 24 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 25 C -0.12 -1.75 10.05 -39.58 -0.40 -2.14 16 26 C -0.11 -1.76 9.67 -39.59 -0.38 -2.14 16 27 N -0.33 -5.39 11.84 33.29 0.39 -4.99 16 28 O 0.12 1.70 11.18 17.25 0.19 1.89 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.10 0.60 8.12 -51.93 -0.42 0.18 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.18 2.09 8.06 -52.49 -0.42 1.66 16 37 H 0.41 7.81 8.36 -40.82 -0.34 7.47 16 38 H 0.02 0.56 7.20 -51.93 -0.37 0.18 16 39 H 0.03 0.75 7.57 -51.93 -0.39 0.35 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 41 H 0.12 1.87 7.73 -52.48 -0.41 1.46 16 42 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 43 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 44 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 45 H 0.12 1.93 8.04 -52.49 -0.42 1.51 16 LS Contribution 385.84 15.07 5.81 5.81 Total: -1.00 -32.86 385.84 -8.26 -41.12 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -6.56 Total: 7.69 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -4.08 Total: -16.59 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.94 Total: -45.06 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.28 Total: -9.53 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.86 -8.26 -41.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156195752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.252 kcal (2) G-P(sol) polarization free energy of solvation -32.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds