Wall clock time and date at job start Tue Mar 31 2020 15:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 C 1.35314 * 126.66592 * 239.71083 * 4 2 1 6 6 C 1.42272 * 103.91708 * 179.91146 * 5 4 2 7 7 C 1.48332 * 126.93453 * 180.13248 * 6 5 4 8 8 O 1.21503 * 120.00338 * 0.24503 * 7 6 5 9 9 N 1.34778 * 120.00144 * 180.24704 * 7 6 5 10 10 C 1.46492 * 120.00475 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.47213 * 34.99906 * 10 9 7 12 12 C 1.53000 * 109.47299 * 155.00132 * 10 9 7 13 13 C 1.50695 * 109.46884 * 294.99839 * 12 10 9 14 14 H 1.08005 * 120.00435 * 0.02562 * 13 12 10 15 15 C 1.37876 * 119.99910 * 179.97438 * 13 12 10 16 16 N 1.31518 * 120.00181 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99904 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47306 * 89.99624 * 17 15 13 19 19 H 1.48509 * 109.47021 * 209.99510 * 17 15 13 20 20 H 1.48496 * 109.47063 * 329.99250 * 17 15 13 21 21 C 1.50708 * 109.47471 * 275.00430 * 10 9 7 22 22 C 1.38232 * 119.99360 * 319.72364 * 21 10 9 23 23 C 1.38237 * 119.99543 * 179.80767 * 22 21 10 24 24 C 1.38232 * 120.00031 * 0.40110 * 23 22 21 25 25 C 1.38235 * 120.00237 * 359.85258 * 24 23 22 26 26 C 1.38232 * 120.00281 * 139.99752 * 21 10 9 27 27 N 1.30983 * 106.12793 * 0.35715 * 6 5 4 28 28 O 1.20909 * 111.43529 * 359.77035 * 27 6 5 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 35 35 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 36 36 H 1.08000 * 128.04151 * 0.02562 * 5 4 2 37 37 H 0.97005 * 119.99438 * 359.97438 * 9 7 6 38 38 H 1.09001 * 109.47022 * 55.00082 * 12 10 9 39 39 H 1.09003 * 109.47113 * 175.00066 * 12 10 9 40 40 H 0.97002 * 120.00183 * 180.02562 * 16 15 13 41 41 H 1.08004 * 120.00307 * 359.97438 * 22 21 10 42 42 H 1.08003 * 120.00136 * 180.22772 * 23 22 21 43 43 H 1.08004 * 119.99971 * 179.83397 * 24 23 22 44 44 H 1.07997 * 120.00472 * 179.97438 * 25 24 23 45 45 H 1.07997 * 119.99962 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 2.8178 -1.8118 -1.2636 6 6 2.9918 -2.0664 -2.6525 7 6 3.7717 -3.1691 -3.2657 8 8 4.3424 -3.9759 -2.5587 9 7 3.8474 -3.2762 -4.6071 10 6 4.6181 -4.3649 -5.2127 11 1 4.5293 -5.2595 -4.5964 12 6 4.0765 -4.6551 -6.6139 13 6 2.6660 -5.1753 -6.5094 14 1 2.2021 -5.2873 -5.5406 15 6 1.9674 -5.5073 -7.6508 16 7 0.7363 -5.9608 -7.5597 17 14 2.7695 -5.3129 -9.3266 18 1 3.4706 -6.5708 -9.6887 19 1 1.7278 -5.0166 -10.3426 20 1 3.7477 -4.1966 -9.2806 21 6 6.0673 -3.9623 -5.3077 22 6 6.4035 -2.6722 -5.6731 23 6 7.7327 -2.3018 -5.7564 24 6 8.7257 -3.2236 -5.4823 25 6 8.3894 -4.5151 -5.1220 26 6 7.0602 -4.8845 -5.0350 27 7 2.3284 -1.1277 -3.2804 28 8 1.7927 -0.3707 -2.5045 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 3.1300 1.4424 0.0005 36 1 3.2179 -2.3692 -0.4296 37 1 3.3915 -2.6323 -5.1714 38 1 4.0829 -3.7380 -7.2030 39 1 4.7045 -5.4027 -7.0986 40 1 0.2449 -6.1947 -8.3627 41 1 5.6278 -1.9530 -5.8909 42 1 7.9955 -1.2928 -6.0383 43 1 9.7642 -2.9349 -5.5500 44 1 9.1652 -5.2355 -4.9083 45 1 6.7975 -5.8935 -4.7534 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156195752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:02 Heat of formation + Delta-G solvation = 15.862817 kcal Electronic energy + Delta-G solvation = -27413.799930 eV Core-core repulsion = 23591.227500 eV Total energy + Delta-G solvation = -3822.572430 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.22609 -41.21039 -39.80772 -37.08525 -36.94581 -35.14930 -34.73682 -32.80033 -31.79558 -31.61979 -31.04173 -28.00679 -27.35834 -25.68025 -24.21511 -23.68536 -23.40425 -23.09875 -21.46740 -20.86433 -19.13673 -18.90405 -18.40051 -18.00698 -17.75625 -17.12444 -16.46100 -16.27401 -16.06963 -15.67147 -15.65001 -15.27205 -14.92093 -14.64947 -14.51921 -14.36081 -14.22377 -14.10958 -13.90883 -13.63692 -13.13502 -13.00161 -12.89900 -12.60819 -12.48097 -12.35779 -12.16058 -11.99923 -11.83918 -11.80178 -11.79286 -11.59209 -11.51972 -11.45182 -10.82588 -10.51242 -10.23469 -9.81710 -9.61992 -8.33202 -6.39031 0.01404 0.42461 0.50104 0.62230 1.33658 1.34625 1.46115 1.81608 1.99882 2.06522 2.31424 2.81799 2.93046 3.02525 3.38550 3.80761 3.82873 3.94269 3.99160 4.07319 4.15159 4.15964 4.26164 4.30741 4.32528 4.48213 4.56432 4.66382 4.70422 4.83921 4.84542 4.89955 4.98285 4.99807 5.06969 5.11425 5.14953 5.15976 5.37240 5.39505 5.41212 5.49553 5.59199 5.59396 5.75718 6.11974 6.18107 6.31491 6.67169 6.89038 7.02512 7.25102 8.83395 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009192 B = 0.003971 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3045.348330 B = 7049.528121 C = 9243.637151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.008 4.008 3 C -0.149 4.149 4 C -0.012 4.012 5 C -0.192 4.192 6 C -0.047 4.047 7 C 0.593 3.407 8 O -0.560 6.560 9 N -0.682 5.682 10 C 0.203 3.797 11 H 0.066 0.934 12 C -0.004 4.004 13 C -0.526 4.526 14 H 0.028 0.972 15 C 0.012 3.988 16 N -0.946 5.946 17 Si 0.947 3.053 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.245 1.245 21 C -0.103 4.103 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.120 4.120 26 C -0.126 4.126 27 N -0.349 5.349 28 O 0.132 5.868 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.127 0.873 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.194 0.806 37 H 0.408 0.592 38 H 0.033 0.967 39 H 0.038 0.962 40 H 0.267 0.733 41 H 0.114 0.886 42 H 0.145 0.855 43 H 0.154 0.846 44 H 0.148 0.852 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.284 15.838 13.352 22.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 C -0.206 4.206 4 C -0.075 4.075 5 C -0.214 4.214 6 C -0.205 4.205 7 C 0.377 3.623 8 O -0.438 6.438 9 N -0.331 5.331 10 C 0.099 3.901 11 H 0.084 0.916 12 C -0.041 4.041 13 C -0.564 4.564 14 H 0.046 0.954 15 C -0.185 4.185 16 N -0.587 5.587 17 Si 0.770 3.230 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.168 1.168 21 C -0.104 4.104 22 C -0.142 4.142 23 C -0.141 4.141 24 C -0.141 4.141 25 C -0.138 4.138 26 C -0.145 4.145 27 N -0.047 5.047 28 O 0.054 5.946 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.071 0.929 32 H 0.145 0.855 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.077 0.923 36 H 0.211 0.789 37 H 0.244 0.756 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.132 0.868 42 H 0.163 0.837 43 H 0.171 0.829 44 H 0.166 0.834 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.389 15.400 12.382 21.877 hybrid contribution -0.492 -0.754 -0.535 1.047 sum 8.897 14.645 11.847 20.832 Atomic orbital electron populations 1.21932 0.92377 1.02651 1.03987 1.20107 0.97241 0.96695 0.88706 1.21910 1.01517 0.93238 1.03970 1.25220 0.98374 0.96533 0.87371 1.22658 1.03649 0.99609 0.95529 1.23481 1.03947 0.98643 0.94388 1.17199 0.79560 0.82996 0.82517 1.90714 1.47811 1.42991 1.62288 1.45782 1.51025 1.30713 1.05562 1.19739 0.86581 0.88457 0.95360 0.91605 1.19734 0.94879 0.97510 0.92027 1.21181 0.98266 1.43576 0.93344 0.95364 1.25921 0.95083 0.93942 1.03582 1.70065 1.12277 1.45728 1.30583 0.85711 0.78744 0.80080 0.78453 1.19155 1.20913 1.16814 1.20309 0.94707 0.95407 0.99970 1.21054 0.97535 0.95342 1.00258 1.21420 0.91961 1.00889 0.99855 1.21509 1.00538 0.93097 0.98970 1.21425 0.95441 0.97553 0.99339 1.21197 0.93571 0.99410 1.00296 1.74214 1.09678 1.03212 1.17627 1.84720 1.53502 1.41840 1.14521 0.92381 0.88658 0.92894 0.85466 0.92312 0.88809 0.92320 0.78896 0.75641 0.94861 0.94398 0.92400 0.86804 0.83683 0.82855 0.83395 0.86291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.18 71.98 0.66 -1.09 16 2 C -0.01 -0.10 3.34 -11.54 -0.04 -0.14 16 3 C -0.15 -1.46 9.17 71.98 0.66 -0.80 16 4 C -0.01 -0.26 5.98 25.01 0.15 -0.11 16 5 C -0.19 -5.24 10.91 22.60 0.25 -4.99 16 6 C -0.05 -1.67 7.19 42.96 0.31 -1.36 16 7 C 0.59 24.80 7.81 86.93 0.68 25.48 16 8 O -0.56 -25.81 16.62 -3.72 -0.06 -25.87 16 9 N -0.68 -28.62 4.04 -448.51 -1.81 -30.44 16 10 C 0.20 8.78 2.11 44.25 0.09 8.87 16 11 H 0.07 3.18 7.44 -2.39 -0.02 3.16 16 12 C 0.00 -0.18 3.56 29.85 0.11 -0.08 16 13 C -0.53 -30.41 9.39 25.60 0.24 -30.17 16 14 H 0.03 1.85 7.99 -2.91 -0.02 1.82 16 15 C 0.01 0.72 5.47 84.65 0.46 1.18 16 16 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 17 Si 0.95 44.11 27.47 68.60 1.88 46.00 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.24 -10.53 6.54 99.48 0.65 -9.87 16 21 C -0.10 -3.80 4.91 -19.86 -0.10 -3.90 16 22 C -0.12 -4.03 9.32 22.27 0.21 -3.82 16 23 C -0.12 -3.21 10.05 22.27 0.22 -2.98 16 24 C -0.12 -2.88 10.05 22.27 0.22 -2.66 16 25 C -0.12 -3.12 10.05 22.27 0.22 -2.89 16 26 C -0.13 -4.19 9.67 22.27 0.22 -3.97 16 27 N -0.35 -11.87 11.84 -49.52 -0.59 -12.46 16 28 O 0.13 3.65 11.18 71.91 0.80 4.45 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.13 1.06 8.12 -2.39 -0.02 1.04 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.19 4.50 8.06 -2.91 -0.02 4.47 16 37 H 0.41 16.70 8.36 -92.70 -0.78 15.93 16 38 H 0.03 1.52 7.20 -2.39 -0.02 1.50 16 39 H 0.04 1.75 7.57 -2.39 -0.02 1.73 16 40 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 41 H 0.11 3.66 7.73 -2.91 -0.02 3.64 16 42 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 43 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 44 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 45 H 0.12 3.89 8.04 -2.91 -0.02 3.86 16 Total: -1.00 -75.85 385.84 5.26 -70.59 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.17 Total: 30.59 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 4.57 Total: -23.44 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -2.10 Total: -102.32 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: 0.74 Total: -21.42 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 46.00 kcal Total: -75.85 5.26 -70.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156195752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.457 kcal (2) G-P(sol) polarization free energy of solvation -75.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds